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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    569201 8q5i:AQ (2.45) BS01 rna ? GO:0003735 ... A0A1D8PP14 N/A
    569202 8q5i:AQ (2.45) BS02 ZN ? GO:0003735 ... A0A1D8PP14 N/A
    569203 8q5i:B (2.45) BS01 rna ? GO:0000028 ... A0A8H6C395 N/A
    569204 8q5i:C (2.45) BS01 rna ? GO:0003735 ... A0A8H6C387 N/A
    569205 8q5i:C (2.45) BS02 rna ? GO:0003735 ... A0A8H6C387 N/A
    569206 8q5i:D (2.45) BS01 rna ? GO:0003723 ... A0A8H6BZ90 N/A
    569207 8q5i:E (2.45) BS01 rna ? GO:0003723 ... A0A8H6BYS1 N/A
    569208 8q5i:F (2.45) BS01 rna ? GO:0003723 ... A0A1D8PCI6 N/A
    569209 8q5i:G (2.45) BS01 rna ? GO:0000028 ... A0A8H6BS29 N/A
    569210 8q5i:H (2.45) BS01 rna ? GO:0003735 ... A0A8H6BZ37 N/A
    569211 8q5i:I (2.45) BS01 rna ? GO:0003735 ... A0A8H6C655 N/A
    569212 8q5i:J (2.45) BS01 rna ? GO:0000462 ... A0A8H6F0S0 N/A
    569213 8q5i:J (2.45) BS02 rna ? GO:0000462 ... A0A8H6F0S0 N/A
    569214 8q5i:K (2.45) BS01 rna ? GO:0003723 ... A0A8H6F1X2 N/A
    569215 8q5i:L (2.45) BS01 rna ? GO:0003723 ... A0A8H6BWQ8 N/A
    569216 8q5i:M (2.45) BS01 rna ? GO:0003735 ... A0A1D8PN83 N/A
    569217 8q5i:M (2.45) BS02 MG ? GO:0003735 ... A0A1D8PN83 N/A
    569218 8q5i:O (2.45) BS01 rna ? GO:0003735 ... A0A8H6F4G0 N/A
    569219 8q5i:P (2.45) BS01 rna ? GO:0000028 ... A0A8H6F0V4 N/A
    569220 8q5i:Q (2.45) BS01 rna ? GO:0000028 ... A0A1D8PK22 N/A
    569221 8q5i:R (2.45) BS01 rna ? GO:0000462 ... O94017 N/A
    569222 8q5i:S (2.45) BS01 rna ? GO:0003735 ... A0A8H6BTR7 N/A
    569223 8q5i:T (2.45) BS01 rna ? GO:0003676 ... A0A8H6F3Y8 N/A
    569224 8q5i:U (2.45) BS01 rna ? GO:0000028 ... A0A8H6C5L4 N/A
    569225 8q5i:V (2.45) BS01 rna ? GO:0003723 ... A0A8H6BYJ9 N/A
    569226 8q5i:W (2.45) BS01 rna ? GO:0000447 ... Q9P844 N/A
    569227 8q5i:X (2.45) BS01 rna ? GO:0003735 ... A0A8H6F0N4 N/A
    569228 8q5i:X (2.45) BS02 MG ? GO:0003735 ... A0A8H6F0N4 N/A
    569229 8q5i:Y (2.45) BS01 rna ? GO:0003735 ... A0A8H6F0V0 N/A
    569230 8q5i:Z (2.45) BS01 rna ? GO:0003735 ... A0A8H6C3K1 N/A
    569231 8q5i:b (2.45) BS01 rna ? GO:0003729 ... A0A8H6BTS1 N/A
    569232 8q5i:c (2.45) BS01 rna ? GO:0000028 ... A0A8H6BWE6 N/A
    569233 8q5i:d (2.45) BS01 rna ? GO:0000028 ... A0A8H6C0A5 N/A
    569234 8q5i:e (2.45) BS01 rna ? GO:0002181 ... A0A1D8PTR4 N/A
    569235 8q5i:e (2.45) BS02 ZN ? GO:0002181 ... A0A1D8PTR4 N/A
    569236 8q5i:f (2.45) BS01 rna ? GO:0003735 ... A0A1D8PSK2 N/A
    569237 8q5i:j (2.45) BS01 rna ? GO:0002181 ... A0A8H6F1X9 N/A
    569238 8q5i:j (2.45) BS02 rna ? GO:0002181 ... A0A8H6F1X9 N/A
    569239 8q5i:j (2.45) BS03 MG ? GO:0002181 ... A0A8H6F1X9 N/A
    569240 8q5i:k (2.45) BS01 rna ? GO:0000027 ... Q59LS1 N/A
    569241 8q5i:l (2.45) BS01 rna ? GO:0003723 ... A0A8H6F4H4 N/A
    569242 8q5i:l (2.45) BS02 rna ? GO:0003723 ... A0A8H6F4H4 N/A
    569243 8q5i:m (2.45) BS01 rna ? GO:0000027 ... Q5AGZ7 N/A
    569244 8q5i:m (2.45) BS02 rna ? GO:0000027 ... Q5AGZ7 N/A
    569245 8q5i:n (2.45) BS01 rna ? GO:0000027 ... Q9P834 N/A
    569246 8q5i:o (2.45) BS01 rna ? GO:0000463 ... A0A8H6BVN2 N/A
    569247 8q5i:o (2.45) BS02 rna ? GO:0000463 ... A0A8H6BVN2 N/A
    569248 8q5i:p (2.45) BS01 rna ? GO:0000470 ... A0A8H6C337 N/A
    569249 8q5i:p (2.45) BS02 rna ? GO:0000470 ... A0A8H6C337 N/A
    569250 8q5i:q (2.45) BS01 rna ? GO:0002181 ... A0A8H6C3N3 N/A
    569251 8q5i:r (2.45) BS01 rna ? GO:0000027 ... Q5AIB8 N/A
    569252 8q5i:r (2.45) BS02 rna ? GO:0000027 ... Q5AIB8 N/A
    569253 8q5i:s (2.45) BS01 rna ? GO:0003723 ... A0A8H6F1S5 N/A
    569254 8q5i:s (2.45) BS02 rna ? GO:0003723 ... A0A8H6F1S5 N/A
    569255 8q5i:t (2.45) BS01 rna ? GO:0003723 ... A0A8H6F5V7 N/A
    569256 8q5i:t (2.45) BS02 rna ? GO:0003723 ... A0A8H6F5V7 N/A
    569257 8q5i:u (2.45) BS01 rna ? GO:0003723 ... A0A8H6F332 N/A
    569258 8q5i:v (2.45) BS01 rna ? GO:0002181 ... Q5A6R1 N/A
    569259 8q5i:v (2.45) BS02 rna ? GO:0002181 ... Q5A6R1 N/A
    569260 8q5i:w (2.45) BS01 rna ? GO:0003729 ... A0A8H6BZ56 N/A
    569261 8q5i:x (2.45) BS01 rna ? GO:0002181 ... A0A8H6BUG0 N/A
    569262 8q5i:x (2.45) BS02 rna ? GO:0002181 ... A0A8H6BUG0 N/A
    569263 8q5i:x (2.45) BS03 MG ? GO:0002181 ... A0A8H6BUG0 N/A
    569264 8q5i:y (2.45) BS01 rna ? GO:0003723 ... A0A8H6C4Y1 N/A
    569265 8q5i:z (2.45) BS01 rna ? GO:0003723 ... A0A1D8PK40 N/A
    569266 8q5i:z (2.45) BS02 rna ? GO:0003723 ... A0A1D8PK40 N/A
    569267 8q5p:A (1.814) BS01 peptide 2.1.1.-
    2.1.1.359    		 GO:0005634 ... Q9BYW2 38160530
    569268 8q5p:A (1.814) BS02 ZN 2.1.1.-
    2.1.1.359    		 GO:0005634 ... Q9BYW2 38160530
    569269 8q5p:A (1.814) BS03 ZN 2.1.1.-
    2.1.1.359    		 GO:0005634 ... Q9BYW2 38160530
    569270 8q5p:A (1.814) BS04 ZN 2.1.1.-
    2.1.1.359    		 GO:0005634 ... Q9BYW2 38160530
    569271 8q5p:A (1.814) BS05 SAM 2.1.1.-
    2.1.1.359    		 GO:0005634 ... Q9BYW2 38160530
    569272 8q5u:D (3.0) BS01 BMA N/A GO:0004553 ... T1WGN1 38569940
    569273 8q5u:D (3.0) BS02 MAN N/A GO:0004553 ... T1WGN1 38569940
    569274 8q5u:D (3.0) BS03 FUC N/A GO:0004553 ... T1WGN1 38569940
    569275 8q5u:D (3.0) BS04 CA N/A GO:0004553 ... T1WGN1 38569940
    569276 8q5u:E (3.0) BS01 CA N/A GO:0004553 ... T1WGN1 38569940
    569277 8q5u:F (3.0) BS01 BMA N/A GO:0004553 ... T1WGN1 38569940
    569278 8q5u:F (3.0) BS02 MAN N/A GO:0004553 ... T1WGN1 38569940
    569279 8q5u:F (3.0) BS03 FUC N/A GO:0004553 ... T1WGN1 38569940
    569280 8q5u:F (3.0) BS04 CA N/A GO:0004553 ... T1WGN1 38569940
    569281 8q61:A (2.32) BS01 K06 2.7.11.1 GO:0004672 ... P31751 36127435
    569282 8q63:A (3.68) BS01 dna 2.7.7.6 GO:0000002 ... P13433 37821701
    569283 8q63:A (3.68) BS02 dna 2.7.7.6 GO:0000002 ... P13433 37821701
    569284 8q63:A (3.68) BS03 rna 2.7.7.6 GO:0000002 ... P13433 37821701
    569285 8q63:B (3.68) BS01 dna 2.1.1.- GO:0003677 ... P14908 37821701
    569286 8q63:B (3.68) BS02 dna 2.1.1.- GO:0003677 ... P14908 37821701
    569287 8q6m:A (1.77) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 38289969
    569288 8q6m:A (1.77) BS02 CU 1.15.1.1 GO:0000302 ... P00441 38289969
    569289 8q6m:B (1.77) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 38289969
    569290 8q6m:B (1.77) BS02 CU 1.15.1.1 GO:0000302 ... P00441 38289969
    569291 8q6o:2 (3.14) BS01 ZN 3.6.4.12 GO:0000727 ... P55861 37820732
    569292 8q6o:4 (3.14) BS01 ZN 3.6.4.12 GO:0000727 ... P30664 37820732
    569293 8q6o:5 (3.14) BS01 ZN 3.6.4.12 GO:0000727 ... P55862 37820732
    569294 8q6o:6 (3.14) BS01 ZN 3.6.4.12 GO:0000727 ... Q5FWY4 37820732
    569295 8q6o:7 (3.14) BS01 ZN 3.6.4.12 GO:0000727 ... Q7ZXB1 37820732
    569296 8q6o:A (3.14) BS01 ZN 3.6.4.12 GO:0000727 ... P55861 37820732
    569297 8q6o:C (3.14) BS01 ZN 3.6.4.12 GO:0000727 ... P30664 37820732
    569298 8q6o:D (3.14) BS01 ZN 3.6.4.12 GO:0000727 ... P55862 37820732
    569299 8q6o:E (3.14) BS01 ZN 3.6.4.12 GO:0000727 ... Q5FWY4 37820732
    569300 8q6o:F (3.14) BS01 ZN 3.6.4.12 GO:0000727 ... Q7ZXB1 37820732
    569301 8q6p:2 (3.53) BS01 ATP 3.6.4.12 GO:0000727 ... P55861 37820732
    569302 8q6p:3 (3.53) BS01 peptide 3.6.4.12 GO:0000727 ... P49739 37820732
    569303 8q6p:3 (3.53) BS02 ATP 3.6.4.12 GO:0000727 ... P49739 37820732
    569304 8q6p:3 (3.53) BS03 ATP 3.6.4.12 GO:0000727 ... P49739 37820732
    569305 8q6p:5 (3.53) BS01 ATP 3.6.4.12 GO:0000727 ... P55862 37820732
    569306 8q6p:5 (3.53) BS02 ATP 3.6.4.12 GO:0000727 ... P55862 37820732
    569307 8q6p:6 (3.53) BS01 ATP 3.6.4.12 GO:0000727 ... Q5FWY4 37820732
    569308 8q6p:6 (3.53) BS02 ATP 3.6.4.12 GO:0000727 ... Q5FWY4 37820732
    569309 8q6p:7 (3.53) BS01 ATP 3.6.4.12 GO:0000727 ... Q7ZXB1 37820732
    569310 8q74:A (3.68) BS01 CU N/A GO:0005524 ... Q6H7M3 38538615
    569311 8q75:A (3.2) BS01 ALF N/A GO:0005524 ... Q6H7M3 38538615
    569312 8q75:A (3.2) BS02 MG N/A GO:0005524 ... Q6H7M3 38538615
    569313 8q76:A (3.29) BS01 MG N/A GO:0005524 ... Q6H7M3 38538615
    569314 8q77:A (1.255) BS01 LN3 2.7.11.1 GO:0000785 ... P19784 N/A
    569315 8q77:A (1.255) BS02 LN3 2.7.11.1 GO:0000785 ... P19784 N/A
    569316 8q7e:A (4.4) BS01 peptide ? GO:0000226 ... Q8IWT3 38605244
    569317 8q7e:E (4.4) BS01 peptide ? GO:0000226 ... Q8IWT3 38605244
    569318 8q7e:I (4.4) BS01 peptide ? GO:0000226 ... Q8IWT3 38605244
    569319 8q7h:A (4.1) BS01 ZN ? GO:0000226 ... Q8IWT3 38605244
    569320 8q7h:A (4.1) BS02 ZN ? GO:0000226 ... Q8IWT3 38605244
    569321 8q7h:A (4.1) BS03 ZN ? GO:0000226 ... Q8IWT3 38605244
    569322 8q7h:A (4.1) BS04 ZN ? GO:0000226 ... Q8IWT3 38605244
    569323 8q7h:C (4.1) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38605244
    569324 8q7h:C (4.1) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38605244
    569325 8q7h:C (4.1) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38605244
    569326 8q7h:D (4.1) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38605244
    569327 8q7h:D (4.1) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38605244
    569328 8q7h:D (4.1) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38605244
    569329 8q7i:A (1.95) BS01 peptide ? GO:0003677 ... G0SF70 38223238
    569330 8q7n:7 (3.1) BS01 rna ? GO:0000389 ... Q15459 38383864
    569331 8q7n:A (3.1) BS01 rna ? GO:0000244 ... Q6P2Q9 38383864
    569332 8q7n:A (3.1) BS02 rna ? GO:0000244 ... Q6P2Q9 38383864
    569333 8q7n:A (3.1) BS03 rna ? GO:0000244 ... Q6P2Q9 38383864
    569334 8q7n:D (3.1) BS01 rna ? GO:0000245 ... P83876 38383864
    569335 8q7n:D (3.1) BS02 rna ? GO:0000245 ... P83876 38383864
    569336 8q7n:D (3.1) BS03 rna ? GO:0000245 ... P83876 38383864
    569337 8q7n:F (3.1) BS01 rna ? GO:0000375 ... O43172 38383864
    569338 8q7n:I (3.1) BS01 rna ? GO:0000398 ... Q8NAV1 38383864
    569339 8q7n:J (3.1) BS01 rna ? GO:0000244 ... O43395 38383864
    569340 8q7n:J (3.1) BS02 rna ? GO:0000244 ... O43395 38383864
    569341 8q7n:K (3.1) BS01 rna ? GO:0000398 ... P55081 38383864
    569342 8q7n:K (3.1) BS02 rna ? GO:0000398 ... P55081 38383864
    569343 8q7n:L (3.1) BS01 rna ? GO:0000244 ... Q8WWY3 38383864
    569344 8q7n:L (3.1) BS02 rna ? GO:0000244 ... Q8WWY3 38383864
    569345 8q7n:M (3.1) BS01 rna ? GO:0000398 ... P55769 38383864
    569346 8q7n:M (3.1) BS02 rna ? GO:0000398 ... P55769 38383864
    569347 8q7n:N (3.1) BS01 rna ? GO:0000244 ... O94906 38383864
    569348 8q7n:Q (3.1) BS01 rna ? GO:0000398 ... P41223 38383864
    569349 8q7n:X (3.1) BS01 rna ? GO:0000398 ... O75554 38383864
    569350 8q7n:X (3.1) BS02 rna ? GO:0000398 ... O75554 38383864
    569351 8q7n:r (3.1) BS01 rna ? GO:0000398 ... Q96NC0 38383864
    569352 8q7n:r (3.1) BS02 rna ? GO:0000398 ... Q96NC0 38383864
    569353 8q7n:s (3.1) BS01 rna ? GO:0000398 ... Q9BZL1 38383864
    569354 8q7q:A (3.2) BS01 rna ? GO:0000244 ... Q6P2Q9 38467876
    569355 8q7q:A (3.2) BS02 peptide ? GO:0000244 ... Q6P2Q9 38467876
    569356 8q7q:A (3.2) BS03 peptide ? GO:0000244 ... Q6P2Q9 38467876
    569357 8q7q:C (3.2) BS01 GTP ? GO:0000398 ... Q15029 38467876
    569358 8q7q:D (3.2) BS01 rna ? GO:0000375 ... Q96DI7 38467876
    569359 8q7q:a (3.2) BS01 rna ? GO:0000243 ... P62314 38467876
    569360 8q7q:b (3.2) BS01 rna ? GO:0000387 ... P14678 38467876
    569361 8q7q:c (3.2) BS01 rna ? GO:0000245 ... P62316 38467876
    569362 8q7q:d (3.2) BS01 rna ? GO:0000243 ... P62318 38467876
    569363 8q7q:e (3.2) BS01 rna ? GO:0000245 ... P62304 38467876
    569364 8q7q:f (3.2) BS01 rna ? GO:0000387 ... P62306 38467876
    569365 8q7q:g (3.2) BS01 rna ? GO:0000245 ... P62308 38467876
    569366 8q7r:C (3.71) BS01 U9O 2.3.2.23 GO:0000209 ... Q712K3 38382526
    569367 8q7r:R (3.71) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38382526
    569368 8q7r:R (3.71) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38382526
    569369 8q7r:R (3.71) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38382526
    569370 8q7v:A (3.8) BS01 rna ? GO:0000244 ... Q6P2Q9 38467876
    569371 8q7v:A (3.8) BS02 peptide ? GO:0000244 ... Q6P2Q9 38467876
    569372 8q7v:A (3.8) BS03 peptide ? GO:0000244 ... Q6P2Q9 38467876
    569373 8q7v:C (3.8) BS01 GTP ? GO:0000398 ... Q15029 38467876
    569374 8q7v:D (3.8) BS01 rna ? GO:0000375 ... Q96DI7 38467876
    569375 8q7v:a (3.8) BS01 rna ? GO:0000243 ... P62314 38467876
    569376 8q7v:b (3.8) BS01 rna ? GO:0000387 ... P14678 38467876
    569377 8q7v:c (3.8) BS01 rna ? GO:0000245 ... P62316 38467876
    569378 8q7v:d (3.8) BS01 rna ? GO:0000243 ... P62318 38467876
    569379 8q7v:e (3.8) BS01 rna ? GO:0000245 ... P62304 38467876
    569380 8q7v:f (3.8) BS01 rna ? GO:0000387 ... P62306 38467876
    569381 8q7v:g (3.8) BS01 rna ? GO:0000245 ... P62308 38467876
    569382 8q7w:A (3.9) BS01 rna ? GO:0000244 ... Q6P2Q9 38467876
    569383 8q7w:A (3.9) BS02 peptide ? GO:0000244 ... Q6P2Q9 38467876
    569384 8q7w:C (3.9) BS01 GTP ? GO:0000398 ... Q15029 38467876
    569385 8q7w:a (3.9) BS01 rna ? GO:0000243 ... P62314 38467876
    569386 8q7w:b (3.9) BS01 rna ? GO:0000387 ... P14678 38467876
    569387 8q7w:c (3.9) BS01 rna ? GO:0000245 ... P62316 38467876
    569388 8q7w:d (3.9) BS01 rna ? GO:0000243 ... P62318 38467876
    569389 8q7w:e (3.9) BS01 rna ? GO:0000245 ... P62304 38467876
    569390 8q7w:f (3.9) BS01 rna ? GO:0000387 ... P62306 38467876
    569391 8q7w:g (3.9) BS01 rna ? GO:0000245 ... P62308 38467876
    569392 8q7x:A (4.6) BS01 rna ? GO:0000244 ... Q6P2Q9 38467876
    569393 8q7x:C (4.6) BS01 GTP ? GO:0000398 ... Q15029 38467876
    569394 8q7x:a (4.6) BS01 rna ? GO:0000243 ... P62314 38467876
    569395 8q7x:b (4.6) BS01 rna ? GO:0000387 ... P14678 38467876
    569396 8q7x:c (4.6) BS01 rna ? GO:0000245 ... P62316 38467876
    569397 8q7x:d (4.6) BS01 rna ? GO:0000243 ... P62318 38467876
    569398 8q7x:e (4.6) BS01 rna ? GO:0000245 ... P62304 38467876
    569399 8q7x:f (4.6) BS01 rna ? GO:0000387 ... P62306 38467876
    569400 8q7x:g (4.6) BS01 rna ? GO:0000245 ... P62308 38467876
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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