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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    52801 2gtl:K (3.5) BS01 HEM ? GO:0005344 ... P11069 16843898
    52802 2gtl:L (3.5) BS01 HEM ? GO:0005344 ... O61233 16843898
    52803 2gtm:A (1.9) BS01 LID 2.7.11.24 GO:0000077 ... P47811 16750367 MOAD: ic50=542nM
    52804 2gtn:A (1.8) BS01 LIE 2.7.11.24 GO:0000077 ... P47811 16750367 MOAD: ic50=4nM
    52805 2gtp:A (2.55) BS01 ALF ? GO:0000287 ... P63096 18434541
    52806 2gtp:A (2.55) BS02 MG ? GO:0000287 ... P63096 18434541
    52807 2gtp:A (2.55) BS03 GDP ? GO:0000287 ... P63096 18434541
    52808 2gtp:B (2.55) BS01 ALF ? GO:0000287 ... P63096 18434541
    52809 2gtp:B (2.55) BS02 MG ? GO:0000287 ... P63096 18434541
    52810 2gtp:B (2.55) BS03 GDP ? GO:0000287 ... P63096 18434541
    52811 2gtt:A (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52812 2gtt:B (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52813 2gtt:C (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52814 2gtt:D (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52815 2gtt:E (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52816 2gtt:F (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52817 2gtt:G (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52818 2gtt:H (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52819 2gtt:I (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52820 2gtt:J (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52821 2gtt:K (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52822 2gtt:L (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52823 2gtt:M (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52824 2gtt:N (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52825 2gtt:O (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52826 2gtt:P (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52827 2gtt:Q (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52828 2gtt:R (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52829 2gtt:S (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52830 2gtt:T (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52831 2gtt:U (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52832 2gtt:V (3.49) BS01 rna ? GO:0003723 ... P0DOF3 16778023
    52833 2gtx:A (2.0) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52834 2gtx:A (2.0) BS02 NLP 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52835 2gtx:B (2.0) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52836 2gtx:B (2.0) BS02 NLP 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52837 2gu2:A (1.805) BS01 ZN 3.5.1.15 GO:0005634 ... Q9R1T5 17194761
    52838 2gu2:B (1.805) BS01 ZN 3.5.1.15 GO:0005634 ... Q9R1T5 17194761
    52839 2gu4:A (1.8) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52840 2gu4:A (1.8) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52841 2gu4:A (1.8) BS03 NLP 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52842 2gu4:B (1.8) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52843 2gu4:B (1.8) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52844 2gu4:B (1.8) BS03 NLP 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52845 2gu5:A (1.6) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52846 2gu5:A (1.6) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52847 2gu5:A (1.6) BS03 NLP 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52848 2gu5:B (1.6) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52849 2gu5:B (1.6) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52850 2gu5:B (1.6) BS03 NLP 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52851 2gu6:A (1.7) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52852 2gu6:A (1.7) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52853 2gu6:A (1.7) BS03 NLP 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52854 2gu6:B (1.7) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52855 2gu6:B (1.7) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52856 2gu6:B (1.7) BS03 NLP 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52857 2gu7:A (2.0) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52858 2gu7:A (2.0) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52859 2gu7:B (2.0) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52860 2gu7:B (2.0) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    52861 2gu8:A (2.2) BS01 peptide 2.7.11.11 GO:0000287 ... P17612 16765046
    52862 2gu8:A (2.2) BS02 796 2.7.11.11 GO:0000287 ... P17612 16765046 MOAD: ic50=0.1nM
    PDBbind: -logKd/Ki=8.59, IC50=2.6nM
    BindingDB: IC50=0.100000nM
    52863 2guf:A (1.95) BS01 MPG ? GO:0005509 ... P06129 17028020
    52864 2guf:A (1.95) BS02 MPG ? GO:0005509 ... P06129 17028020
    52865 2guf:A (1.95) BS03 MPG ? GO:0005509 ... P06129 17028020
    52866 2guf:A (1.95) BS04 MPG ? GO:0005509 ... P06129 17028020
    52867 2guf:A (1.95) BS05 MPG ? GO:0005509 ... P06129 17028020
    52868 2guf:A (1.95) BS06 MPG ? GO:0005509 ... P06129 17028020
    52869 2guf:A (1.95) BS07 MPG ? GO:0005509 ... P06129 17028020
    52870 2guf:A (1.95) BS08 MPG ? GO:0005509 ... P06129 17028020
    52871 2guf:A (1.95) BS09 MPG ? GO:0005509 ... P06129 17028020
    52872 2guf:A (1.95) BS10 MPG ? GO:0005509 ... P06129 17028020
    52873 2guy:A (1.59) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 16880540
    52874 2gv2:A (1.8) BS01 peptide 2.3.2.27 GO:0005634 ... Q00987 16925398
    52875 2gv8:A (2.1) BS01 FAD 1.14.13.- GO:0004497 ... Q9HFE4 16777962
    52876 2gv8:A (2.1) BS02 NDP 1.14.13.- GO:0004497 ... Q9HFE4 16777962
    52877 2gv8:B (2.1) BS01 FAD 1.14.13.- GO:0004497 ... Q9HFE4 16777962
    52878 2gv8:B (2.1) BS02 NDP 1.14.13.- GO:0004497 ... Q9HFE4 16777962
    52879 2gvc:A (2.22) BS01 FAD 1.14.13.- GO:0004497 ... Q9HFE4 16777962
    52880 2gvc:B (2.22) BS01 FAD 1.14.13.- GO:0004497 ... Q9HFE4 16777962
    52881 2gvc:D (2.22) BS01 FAD 1.14.13.- GO:0004497 ... Q9HFE4 16777962
    52882 2gvc:E (2.22) BS01 FAD 1.14.13.- GO:0004497 ... Q9HFE4 16777962
    52883 2gvd:C (2.9) BS01 MN ? GO:0003924 ... P04896 16766715
    52884 2gvd:C (2.9) BS02 GSP ? GO:0003924 ... P04896 16766715
    52885 2gve:A (2.2) BS01 CO 5.3.1.5 GO:0000287 ... P24300 16707576
    52886 2gve:A (2.2) BS02 CO 5.3.1.5 GO:0000287 ... P24300 16707576
    52887 2gvg:A (2.2) BS01 NMN 2.4.2.12 GO:0005125 ... P43490 16783377
    52888 2gvg:A (2.2) BS02 NMN 2.4.2.12 GO:0005125 ... P43490 16783377
    52889 2gvg:B (2.2) BS01 NMN 2.4.2.12 GO:0005125 ... P43490 16783377
    52890 2gvg:C (2.2) BS01 NMN 2.4.2.12 GO:0005125 ... P43490 16783377
    52891 2gvg:C (2.2) BS02 NMN 2.4.2.12 GO:0005125 ... P43490 16783377
    52892 2gvg:D (2.2) BS01 NMN 2.4.2.12 GO:0005125 ... P43490 16783377
    52893 2gvg:D (2.2) BS02 NMN 2.4.2.12 GO:0005125 ... P43490 16783377
    52894 2gvg:E (2.2) BS01 NMN 2.4.2.12 GO:0005125 ... P43490 16783377
    52895 2gvg:E (2.2) BS02 NMN 2.4.2.12 GO:0005125 ... P43490 16783377
    52896 2gvg:F (2.2) BS01 NMN 2.4.2.12 GO:0005125 ... P43490 16783377
    52897 2gvj:A (2.1) BS01 DGB 2.4.2.12 GO:0005125 ... P43490 16783377 MOAD: Ki=0.3nM
    PDBbind: -logKd/Ki=9.52, Ki=0.3nM
    BindingDB: IC50=3.0nM, Ki=0.30nM
    52898 2gvj:B (2.1) BS01 DGB 2.4.2.12 GO:0005125 ... P43490 16783377 MOAD: Ki=0.3nM
    PDBbind: -logKd/Ki=9.52, Ki=0.3nM
    BindingDB: IC50=3.0nM, Ki=0.30nM
    52899 2gvm:B (2.3) BS01 ZN ? GO:0005576 ... P52754 16882996
    52900 2gvq:A (2.43) BS01 BE2 2.4.2.18 GO:0000162 ... P50384 16714288
    52901 2gvq:B (2.43) BS01 BE2 2.4.2.18 GO:0000162 ... P50384 16714288
    52902 2gvq:B (2.43) BS02 BE2 2.4.2.18 GO:0000162 ... P50384 16714288
    52903 2gvq:C (2.43) BS01 BE2 2.4.2.18 GO:0000162 ... P50384 16714288
    52904 2gvq:C (2.43) BS02 BE2 2.4.2.18 GO:0000162 ... P50384 16714288
    52905 2gvq:D (2.43) BS01 BE2 2.4.2.18 GO:0000162 ... P50384 16714288
    52906 2gvq:D (2.43) BS02 BE2 2.4.2.18 GO:0000162 ... P50384 16714288
    52907 2gvy:A (1.8) BS01 BGC 3.2.1.1 GO:0004556 ... P0C1B3 16880540
    52908 2gvy:A (1.8) BS02 GLC 3.2.1.1 GO:0004556 ... P0C1B3 16880540
    52909 2gvy:A (1.8) BS03 GLC 3.2.1.1 GO:0004556 ... P0C1B3 16880540
    52910 2gvy:A (1.8) BS04 GLC 3.2.1.1 GO:0004556 ... P0C1B3 16880540
    52911 2gvy:A (1.8) BS05 BGC 3.2.1.1 GO:0004556 ... P0C1B3 16880540
    52912 2gvy:A (1.8) BS06 GLC 3.2.1.1 GO:0004556 ... P0C1B3 16880540
    52913 2gvy:A (1.8) BS07 GLC 3.2.1.1 GO:0004556 ... P0C1B3 16880540
    52914 2gvy:A (1.8) BS08 GLC 3.2.1.1 GO:0004556 ... P0C1B3 16880540
    52915 2gvy:A (1.8) BS09 CA 3.2.1.1 GO:0004556 ... P0C1B3 16880540
    52916 2gvy:B (1.8) BS01 GLC 3.2.1.1 GO:0004556 ... P0C1B3 16880540
    52917 2gvy:B (1.8) BS02 GLC 3.2.1.1 GO:0004556 ... P0C1B3 16880540
    52918 2gvy:B (1.8) BS03 BGC 3.2.1.1 GO:0004556 ... P0C1B3 16880540
    52919 2gvy:B (1.8) BS04 GLC 3.2.1.1 GO:0004556 ... P0C1B3 16880540
    52920 2gvy:B (1.8) BS05 CA 3.2.1.1 GO:0004556 ... P0C1B3 16880540
    52921 2gvz:C (3.27) BS01 MN ? GO:0003924 ... P04896 16766715
    52922 2gvz:C (3.27) BS02 GSP ? GO:0003924 ... P04896 16766715
    52923 2gwg:A (1.8) BS01 ZN ? GO:0005737 ... Q6N0R4 N/A
    52924 2gwg:B (1.8) BS01 ZN ? GO:0005737 ... Q6N0R4 N/A
    52925 2gwh:A (1.8) BS01 A3P 2.8.2.1 GO:0004062 ... O75897 17425406
    52926 2gwh:A (1.8) BS02 PCI 2.8.2.1 GO:0004062 ... O75897 17425406
    52927 2gwh:B (1.8) BS01 A3P 2.8.2.1 GO:0004062 ... O75897 17425406
    52928 2gwh:B (1.8) BS02 PCI 2.8.2.1 GO:0004062 ... O75897 17425406
    52929 2gwh:B (1.8) BS03 PCI 2.8.2.1 GO:0004062 ... O75897 17425406
    52930 2gwj:A (1.9) BS01 ATP 3.6.4.- GO:0000287 ... P68135 16905096
    52931 2gwk:A (2.0) BS01 ATP 3.6.4.- GO:0000287 ... P68135 16905096
    52932 2gwk:B (2.0) BS01 ATP 3.6.4.- GO:0000287 ... P68135 16905096
    52933 2gwl:A (1.9) BS01 NAI 2.4.2.31 GO:0005576 ... P21454 16905096
    52934 2gwn:A (1.85) BS01 ZN ? GO:0004038 ... Q7MVW1 N/A
    52935 2gwn:A (1.85) BS02 ZN ? GO:0004038 ... Q7MVW1 N/A
    52936 2gwr:A (2.1) BS01 CA ? GO:0000156 ... P9WGM7 17511470
    52937 2gww:A (2.72) BS01 peptide ? GO:0003779 ... P18206 17088427
    52938 2gx6:A (1.97) BS01 RIP 3.6.3.17 GO:0005515 ... P02925 N/A
    52939 2gx8:A (2.2) BS01 ZN ? GO:0005737 ... Q818H0 17586767
    52940 2gx8:A (2.2) BS02 ZN ? GO:0005737 ... Q818H0 17586767
    52941 2gx8:B (2.2) BS01 ZN ? GO:0005737 ... Q818H0 17586767
    52942 2gx8:B (2.2) BS02 ZN ? GO:0005737 ... Q818H0 17586767
    52943 2gx8:C (2.2) BS01 ZN ? GO:0005737 ... Q818H0 17586767
    52944 2gx8:C (2.2) BS02 ZN ? GO:0005737 ... Q818H0 17586767
    52945 2gyd:A (1.72) BS01 DFE ? GO:0005506 ... P02791 17163775
    52946 2gyi:A (1.6) BS01 MG 5.3.1.5 GO:0000287 ... P15587 7893671
    52947 2gyi:A (1.6) BS02 MG 5.3.1.5 GO:0000287 ... P15587 7893671
    52948 2gyi:A (1.6) BS03 HYA 5.3.1.5 GO:0000287 ... P15587 7893671 MOAD: Ki<100nM
    PDBbind: -logKd/Ki=7.00, Ki<=100nM
    52949 2gyi:B (1.6) BS01 MG 5.3.1.5 GO:0000287 ... P15587 7893671
    52950 2gyi:B (1.6) BS02 MG 5.3.1.5 GO:0000287 ... P15587 7893671
    52951 2gyi:B (1.6) BS03 HYA 5.3.1.5 GO:0000287 ... P15587 7893671 MOAD: Ki<100nM
    PDBbind: -logKd/Ki=7.00, Ki<=100nM
    52952 2gyo:A (2.0) BS01 COA 2.3.1.180 GO:0004315 ... P0A6R0 17524982
    52953 2gyo:A (2.0) BS02 MEE 2.3.1.180 GO:0004315 ... P0A6R0 17524982
    52954 2gys:B (2.7) BS01 FUC ? GO:0004896 ... P32927 16754968
    52955 2gyu:A (2.2) BS01 HI6 3.1.1.7 GO:0001919 ... P21836 16876764
    52956 2gyu:B (2.2) BS01 HI6 3.1.1.7 GO:0001919 ... P21836 16876764
    52957 2gyv:A (2.5) BS01 CO3 3.1.1.7 GO:0001919 ... P21836 16876764
    52958 2gyv:A (2.5) BS02 HBP 3.1.1.7 GO:0001919 ... P21836 16876764
    52959 2gyv:B (2.5) BS01 CO3 3.1.1.7 GO:0001919 ... P21836 16876764
    52960 2gyv:B (2.5) BS02 HBP 3.1.1.7 GO:0001919 ... P21836 16876764
    52961 2gyw:A (2.4) BS01 CO3 3.1.1.7 GO:0001919 ... P21836 16876764
    52962 2gyw:A (2.4) BS02 OBI 3.1.1.7 GO:0001919 ... P21836 16876764
    52963 2gyw:B (2.4) BS01 CO3 3.1.1.7 GO:0001919 ... P21836 16876764
    52964 2gyw:B (2.4) BS02 OBI 3.1.1.7 GO:0001919 ... P21836 16876764
    52965 2gzw:A (2.21) BS01 CMP ? GO:0003677 ... P0ACJ8 N/A
    52966 2gzw:A (2.21) BS02 CMP ? GO:0003677 ... P0ACJ8 N/A
    52967 2gzw:B (2.21) BS01 CMP ? GO:0003677 ... P0ACJ8 N/A
    52968 2gzw:B (2.21) BS02 CMP ? GO:0003677 ... P0ACJ8 N/A
    52969 2gzw:C (2.21) BS01 CMP ? GO:0003677 ... P0ACJ8 N/A
    52970 2gzw:C (2.21) BS02 CMP ? GO:0003677 ... P0ACJ8 N/A
    52971 2gzw:D (2.21) BS01 CMP ? GO:0003677 ... P0ACJ8 N/A
    52972 2gzw:D (2.21) BS02 CMP ? GO:0003677 ... P0ACJ8 N/A
    52973 2h0d:B (2.5) BS01 ZN 2.3.2.27 GO:0000151 ... Q99496 16714294
    52974 2h0d:B (2.5) BS02 ZN 2.3.2.27 GO:0000151 ... Q99496 16714294
    52975 2h0k:A (2.76) BS01 CA ? GO:0001786 ... P14668 21468022
    52976 2h0k:A (2.76) BS02 CA ? GO:0001786 ... P14668 21468022
    52977 2h0k:A (2.76) BS03 CA ? GO:0001786 ... P14668 21468022
    52978 2h0k:A (2.76) BS04 CA ? GO:0001786 ... P14668 21468022
    52979 2h0k:A (2.76) BS05 CA ? GO:0001786 ... P14668 21468022
    52980 2h0k:A (2.76) BS06 CA ? GO:0001786 ... P14668 21468022
    52981 2h0k:A (2.76) BS07 CA ? GO:0001786 ... P14668 21468022
    52982 2h0k:A (2.76) BS08 CA ? GO:0001786 ... P14668 21468022
    52983 2h0k:A (2.76) BS09 CA ? GO:0001786 ... P14668 21468022
    52984 2h0k:A (2.76) BS10 CA ? GO:0001786 ... P14668 21468022
    52985 2h0k:A (2.76) BS11 CA ? GO:0001786 ... P14668 21468022
    52986 2h0k:B (2.76) BS01 CA ? GO:0001786 ... P14668 21468022
    52987 2h0k:B (2.76) BS02 CA ? GO:0001786 ... P14668 21468022
    52988 2h0k:B (2.76) BS03 CA ? GO:0001786 ... P14668 21468022
    52989 2h0k:B (2.76) BS04 CA ? GO:0001786 ... P14668 21468022
    52990 2h0k:B (2.76) BS05 CA ? GO:0001786 ... P14668 21468022
    52991 2h0k:B (2.76) BS06 CA ? GO:0001786 ... P14668 21468022
    52992 2h0k:B (2.76) BS07 CA ? GO:0001786 ... P14668 21468022
    52993 2h0k:B (2.76) BS08 CA ? GO:0001786 ... P14668 21468022
    52994 2h0k:B (2.76) BS09 CA ? GO:0001786 ... P14668 21468022
    52995 2h0k:B (2.76) BS10 CA ? GO:0001786 ... P14668 21468022
    52996 2h0k:B (2.76) BS11 CA ? GO:0001786 ... P14668 21468022
    52997 2h0l:A (2.59) BS01 CA ? GO:0001786 ... P14668 N/A
    52998 2h0l:A (2.59) BS02 CA ? GO:0001786 ... P14668 N/A
    52999 2h0l:A (2.59) BS03 CA ? GO:0001786 ... P14668 N/A
    53000 2h0r:A (2.9) BS01 ZN 3.5.1.19 GO:0000183 ... P53184 17382284
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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