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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    51001 2fhh:Z (2.99) BS01 M1N 3.4.25.1 GO:0004298 ... P9WHT9 16468986
    51002 2fhi:A (2.6) BS01 IB2 2.7.7.51
    3.6.1.29
    3.6.2.1
    3.9.1.-    		 GO:0000166 ... P49789 9576908
    51003 2fhj:A (2.0) BS01 MFN 2.3.1.101 GO:0005737 ... Q49610 16466742
    51004 2fhj:A (2.0) BS02 MFN 2.3.1.101 GO:0005737 ... Q49610 16466742
    51005 2fhj:A (2.0) BS03 H4Z 2.3.1.101 GO:0005737 ... Q49610 16466742
    51006 2fhj:B (2.0) BS01 MFN 2.3.1.101 GO:0005737 ... Q49610 16466742
    51007 2fhj:B (2.0) BS02 MFN 2.3.1.101 GO:0005737 ... Q49610 16466742
    51008 2fhj:C (2.0) BS01 MFN 2.3.1.101 GO:0005737 ... Q49610 16466742
    51009 2fhj:C (2.0) BS02 H4Z 2.3.1.101 GO:0005737 ... Q49610 16466742
    51010 2fhj:C (2.0) BS03 MFN 2.3.1.101 GO:0005737 ... Q49610 16466742
    51011 2fhj:D (2.0) BS01 MFN 2.3.1.101 GO:0005737 ... Q49610 16466742
    51012 2fhj:D (2.0) BS02 MFN 2.3.1.101 GO:0005737 ... Q49610 16466742
    51013 2fhk:A (2.0) BS01 MFN 2.3.1.101 GO:0005737 ... Q49610 16466742
    51014 2fhk:A (2.0) BS02 MFN 2.3.1.101 GO:0005737 ... Q49610 16466742
    51015 2fhk:B (2.0) BS01 MFN 2.3.1.101 GO:0005737 ... Q49610 16466742
    51016 2fhk:B (2.0) BS02 MFN 2.3.1.101 GO:0005737 ... Q49610 16466742
    51017 2fhk:C (2.0) BS01 MFN 2.3.1.101 GO:0005737 ... Q49610 16466742
    51018 2fhk:D (2.0) BS01 MFN 2.3.1.101 GO:0005737 ... Q49610 16466742
    51019 2fhl:A (1.05) BS01 BNI ? GO:0005576 ... P56734 16546211
    51020 2fhl:B (1.05) BS01 BNI ? GO:0005576 ... P56734 16546211
    51021 2fhn:X (1.3) BS01 BNI ? GO:0005576 ... P56734 16546211
    51022 2fhn:Y (1.3) BS01 BNI ? GO:0005576 ... P56734 16546211
    51023 2fhr:A (2.2) BS01 FSI 3.2.1.18 GO:0004308 ... O44049 16298994
    51024 2fhx:A (1.9) BS01 ZN 3.5.2.6 GO:0008270 ... Q8G9Q0 16460758
    51025 2fhx:A (1.9) BS02 AZI 3.5.2.6 GO:0008270 ... Q8G9Q0 16460758
    51026 2fhx:A (1.9) BS03 AZI 3.5.2.6 GO:0008270 ... Q8G9Q0 16460758
    51027 2fhx:B (1.9) BS01 ZN 3.5.2.6 GO:0008270 ... Q8G9Q0 16460758
    51028 2fhx:B (1.9) BS02 AZI 3.5.2.6 GO:0008270 ... Q8G9Q0 16460758
    51029 2fhy:A (2.95) BS01 MG 3.1.3.11 GO:0000122 ... P09467 16442285
    51030 2fhy:A (2.95) BS02 A37 3.1.3.11 GO:0000122 ... P09467 16442285 PDBbind: -logKd/Ki=5.96, Ki=1.1uM
    BindingDB: IC50=3400nM
    51031 2fhy:D (2.95) BS01 MG 3.1.3.11 GO:0000122 ... P09467 16442285
    51032 2fhy:D (2.95) BS02 A37 3.1.3.11 GO:0000122 ... P09467 16442285 BindingDB: IC50=3400nM
    51033 2fhy:H (2.95) BS01 MG 3.1.3.11 GO:0000122 ... P09467 16442285
    51034 2fhy:H (2.95) BS02 A37 3.1.3.11 GO:0000122 ... P09467 16442285 BindingDB: IC50=3400nM
    51035 2fhy:L (2.95) BS01 MG 3.1.3.11 GO:0000122 ... P09467 16442285
    51036 2fhy:L (2.95) BS02 MG 3.1.3.11 GO:0000122 ... P09467 16442285
    51037 2fhy:L (2.95) BS03 A37 3.1.3.11 GO:0000122 ... P09467 16442285 PDBbind: -logKd/Ki=5.96, Ki=1.1uM
    BindingDB: IC50=3400nM
    51038 2fi1:A (1.4) BS01 CA ? GO:0003824 ... A0A0H2UPC8 N/A
    51039 2fi3:E (1.58) BS01 CA 3.4.21.4 GO:0004175 ... P00760 18692070
    51040 2fi4:E (1.58) BS01 CA 3.4.21.4 GO:0004175 ... P00760 18692070
    51041 2fi5:E (1.58) BS01 CA 3.4.21.4 GO:0004175 ... P00760 18692070
    51042 2fie:A (2.81) BS01 A74 3.1.3.11 GO:0000122 ... P09467 16446092 PDBbind: -logKd/Ki=5.46, IC50=3.5uM
    51043 2fie:D (2.81) BS01 A74 3.1.3.11 GO:0000122 ... P09467 16446092
    51044 2fie:D (2.81) BS02 A74 3.1.3.11 GO:0000122 ... P09467 16446092
    51045 2fie:H (2.81) BS01 A74 3.1.3.11 GO:0000122 ... P09467 16446092
    51046 2fie:L (2.81) BS01 A74 3.1.3.11 GO:0000122 ... P09467 16446092 PDBbind: -logKd/Ki=5.46, IC50=3.5uM
    51047 2fie:L (2.81) BS02 A74 3.1.3.11 GO:0000122 ... P09467 16446092 PDBbind: -logKd/Ki=5.46, IC50=3.5uM
    51048 2fir:L (2.0) BS01 FUC 3.4.21.21 GO:0005509 ... P08709 16757484
    51049 2fir:L (2.0) BS02 MG 3.4.21.21 GO:0005509 ... P08709 16757484
    51050 2fir:L (2.0) BS03 CA 3.4.21.21 GO:0005509 ... P08709 16757484
    51051 2fir:L (2.0) BS04 CA 3.4.21.21 GO:0005509 ... P08709 16757484
    51052 2fir:L (2.0) BS05 MG 3.4.21.21 GO:0005509 ... P08709 16757484
    51053 2fir:L (2.0) BS06 CA 3.4.21.21 GO:0005509 ... P08709 16757484
    51054 2fir:L (2.0) BS07 CA 3.4.21.21 GO:0005509 ... P08709 16757484
    51055 2fir:L (2.0) BS08 MG 3.4.21.21 GO:0005509 ... P08709 16757484
    51056 2fir:L (2.0) BS09 CA 3.4.21.21 GO:0005509 ... P08709 16757484
    51057 2fit:A (1.9) BS01 FRU 2.7.7.51
    3.6.1.29
    3.6.2.1
    3.9.1.-    		 GO:0000166 ... P49789 9261067
    51058 2fix:A (3.5) BS01 870 3.1.3.11 GO:0000122 ... P09467 16446092 PDBbind: -logKd/Ki=6.24, IC50=0.57uM
    BindingDB: IC50=570nM
    51059 2fix:A (3.5) BS02 870 3.1.3.11 GO:0000122 ... P09467 16446092 PDBbind: -logKd/Ki=6.24, IC50=0.57uM
    BindingDB: IC50=570nM
    51060 2fix:D (3.5) BS01 870 3.1.3.11 GO:0000122 ... P09467 16446092 BindingDB: IC50=570nM
    51061 2fix:D (3.5) BS02 870 3.1.3.11 GO:0000122 ... P09467 16446092 BindingDB: IC50=570nM
    51062 2fix:H (3.5) BS01 870 3.1.3.11 GO:0000122 ... P09467 16446092 BindingDB: IC50=570nM
    51063 2fix:L (3.5) BS01 870 3.1.3.11 GO:0000122 ... P09467 16446092 PDBbind: -logKd/Ki=6.24, IC50=0.57uM
    BindingDB: IC50=570nM
    51064 2fix:L (3.5) BS02 870 3.1.3.11 GO:0000122 ... P09467 16446092 PDBbind: -logKd/Ki=6.24, IC50=0.57uM
    BindingDB: IC50=570nM
    51065 2fiy:A (2.1) BS01 FE ? GO:0005737 ... Q9HV00 N/A
    51066 2fiy:A (2.1) BS02 FE ? GO:0005737 ... Q9HV00 N/A
    51067 2fiy:B (2.1) BS01 FE ? GO:0005737 ... Q9HV00 N/A
    51068 2fiy:B (2.1) BS02 FE ? GO:0005737 ... Q9HV00 N/A
    51069 2fiy:B (2.1) BS03 FE ? GO:0005737 ... Q9HV00 N/A
    51070 2fj0:A (2.7) BS01 TFC 3.1.1.- GO:0005576 ... Q9GPG0 16566578 PDBbind: -logKd/Ki=7.66, IC50=22nM
    BindingDB: IC50=22nM
    51071 2fj7:A (3.2) BS01 dna ? GO:0000786 ... P84233 16860337
    51072 2fj7:A (3.2) BS02 dna ? GO:0000786 ... P84233 16860337
    51073 2fj7:B (3.2) BS01 dna ? GO:0000786 ... P62799 16860337
    51074 2fj7:B (3.2) BS02 dna ? GO:0000786 ... P62799 16860337
    51075 2fj7:C (3.2) BS01 dna ? GO:0000786 ... P06897 16860337
    51076 2fj7:C (3.2) BS02 dna ? GO:0000786 ... P06897 16860337
    51077 2fj7:D (3.2) BS01 dna ? GO:0000786 ... P02281 16860337
    51078 2fj7:D (3.2) BS02 dna ? GO:0000786 ... P02281 16860337
    51079 2fj7:E (3.2) BS01 dna ? GO:0000786 ... P84233 16860337
    51080 2fj7:E (3.2) BS02 dna ? GO:0000786 ... P84233 16860337
    51081 2fj7:F (3.2) BS01 dna ? GO:0000786 ... P62799 16860337
    51082 2fj7:F (3.2) BS02 dna ? GO:0000786 ... P62799 16860337
    51083 2fj7:G (3.2) BS01 dna ? GO:0000786 ... P06897 16860337
    51084 2fj7:G (3.2) BS02 dna ? GO:0000786 ... P06897 16860337
    51085 2fj7:H (3.2) BS01 dna ? GO:0000786 ... P02281 16860337
    51086 2fj9:A (1.6) BS01 ZN ? GO:0000062 ... P07108 17044054
    51087 2fja:A (2.0) BS01 FAD 1.8.99.2 GO:0000104 ... O28603 16503650
    51088 2fja:A (2.0) BS02 ADX 1.8.99.2 GO:0000104 ... O28603 16503650
    51089 2fja:C (2.0) BS01 FAD 1.8.99.2 GO:0000104 ... O28603 16503650
    51090 2fja:C (2.0) BS02 ADX 1.8.99.2 GO:0000104 ... O28603 16503650
    51091 2fjb:A (1.7) BS01 SFD 1.8.99.2 GO:0000104 ... O28603 16503650
    51092 2fjb:A (1.7) BS02 AMP 1.8.99.2 GO:0000104 ... O28603 16503650
    51093 2fjb:A (1.7) BS03 AMP 1.8.99.2 GO:0000104 ... O28603 16503650
    51094 2fjb:C (1.7) BS01 SFD 1.8.99.2 GO:0000104 ... O28603 16503650
    51095 2fjb:C (1.7) BS02 AMP 1.8.99.2 GO:0000104 ... O28603 16503650
    51096 2fjd:A (1.84) BS01 SFD 1.8.99.2 GO:0000104 ... O28603 16503650
    51097 2fjd:C (1.84) BS01 SFD 1.8.99.2 GO:0000104 ... O28603 16503650
    51098 2fje:A (1.8) BS01 FAD 1.8.99.2 GO:0000104 ... O28603 16503650
    51099 2fje:C (1.8) BS01 FAD 1.8.99.2 GO:0000104 ... O28603 16503650
    51100 2fjp:A (2.4) BS01 S14 3.4.14.5 GO:0001618 ... P27487 16759103 MOAD: ic50=4.3nM
    PDBbind: -logKd/Ki=8.37, IC50=4.3nM
    BindingDB: IC50=4nM, Ki=4.3nM
    51101 2fjp:B (2.4) BS01 S14 3.4.14.5 GO:0001618 ... P27487 16759103 MOAD: ic50=4.3nM
    BindingDB: IC50=4nM, Ki=4.3nM
    51102 2fjs:A (1.85) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 17227014
    51103 2fjs:A (1.85) BS02 CU 1.7.2.1 GO:0005507 ... P38501 17227014
    51104 2fjs:B (1.85) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 17227014
    51105 2fjs:B (1.85) BS02 CU 1.7.2.1 GO:0005507 ... P38501 17227014
    51106 2fjs:C (1.85) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 17227014
    51107 2fjs:C (1.85) BS02 CU 1.7.2.1 GO:0005507 ... P38501 17227014
    51108 2fju:A (2.2) BS01 MG 3.6.5.2 GO:0001764 ... P63000 17115053
    51109 2fju:A (2.2) BS02 GSP 3.6.5.2 GO:0001764 ... P63000 17115053
    51110 2fk0:Q (2.95) BS01 BMA ? GO:0019031 ... Q1KHJ8 16543414
    51111 2fk1:A (1.6) BS01 CU ? GO:0016020 ... P05067 17239395
    51112 2fk2:A (1.65) BS01 CU1 ? GO:0016020 ... P05067 17239395
    51113 2fk3:A (2.4) BS01 CU ? GO:0016020 ... P05067 17239395
    51114 2fk3:E (2.4) BS01 CU ? GO:0016020 ... P05067 17239395
    51115 2fk3:F (2.4) BS01 CU ? GO:0016020 ... P05067 17239395
    51116 2fk3:H (2.4) BS01 CU ? GO:0016020 ... P05067 17239395
    51117 2fk8:A (2.0) BS01 SAM 2.1.1.- GO:0005515 ... Q79FX8 16356931
    51118 2fka:A (2.0) BS01 peptide ? GO:0000160 ... P0A2D5 16674976
    51119 2fka:A (2.0) BS02 MG ? GO:0000160 ... P0A2D5 16674976
    51120 2fka:A (2.0) BS03 BEF ? GO:0000160 ... P0A2D5 16674976
    51121 2fke:A (1.72) BS01 FK5 5.2.1.8 GO:0000413 ... P62942 7684380 BindingDB: Kd=0.200000nM, EC50=0.900000nM, Ki=0.40nM, IC50=2.3nM
    51122 2fkn:A (2.2) BS01 NAD 4.2.1.49 GO:0005737 ... P25503 N/A
    51123 2fkn:B (2.2) BS01 NAD 4.2.1.49 GO:0005737 ... P25503 N/A
    51124 2fkn:C (2.2) BS01 NAD 4.2.1.49 GO:0005737 ... P25503 N/A
    51125 2fkn:D (2.2) BS01 NAD 4.2.1.49 GO:0005737 ... P25503 N/A
    51126 2fkw:A (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    51127 2fkw:A (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    51128 2fkw:A (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    51129 2fkw:A (2.45) BS04 BCL ? GO:0005886 ... P26789 16490208
    51130 2fkw:B (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    51131 2fkw:B (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    51132 2fkw:B (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    51133 2fkw:C (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    51134 2fkw:C (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    51135 2fkw:C (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    51136 2fkw:C (2.45) BS04 BCL ? GO:0005886 ... P26789 16490208
    51137 2fkw:D (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    51138 2fkw:D (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    51139 2fkw:D (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    51140 2fkw:E (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    51141 2fkw:E (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    51142 2fkw:E (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    51143 2fkw:E (2.45) BS04 BCL ? GO:0005886 ... P26789 16490208
    51144 2fkw:E (2.45) BS05 BCL ? GO:0005886 ... P26789 16490208
    51145 2fkw:F (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    51146 2fkw:F (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    51147 2fkw:F (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    51148 2fkw:G (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    51149 2fkw:G (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    51150 2fkw:G (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    51151 2fkw:G (2.45) BS04 BCL ? GO:0005886 ... P26789 16490208
    51152 2fkw:G (2.45) BS05 BCL ? GO:0005886 ... P26789 16490208
    51153 2fkw:H (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    51154 2fkw:H (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    51155 2fkw:H (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    51156 2fkw:I (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    51157 2fkw:I (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    51158 2fkw:I (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    51159 2fkw:J (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    51160 2fkw:J (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    51161 2fkw:J (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    51162 2fkw:K (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    51163 2fkw:K (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    51164 2fkw:K (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    51165 2fkw:K (2.45) BS04 BCL ? GO:0005886 ... P26789 16490208
    51166 2fkw:L (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    51167 2fkw:L (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    51168 2fkw:L (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    51169 2fkw:M (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    51170 2fkw:M (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    51171 2fkw:M (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    51172 2fkw:N (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    51173 2fkw:N (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    51174 2fkw:N (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    51175 2fkw:O (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    51176 2fkw:O (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    51177 2fkw:O (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    51178 2fkw:P (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    51179 2fkw:P (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    51180 2fkw:P (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    51181 2fkw:R (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    51182 2fkw:R (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    51183 2fkw:R (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    51184 2fkw:S (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    51185 2fkw:S (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    51186 2fkw:S (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    51187 2fkz:A (2.0) BS01 FE2 1.16.3.1 GO:0004322 ... P22759 16584178
    51188 2fkz:A (2.0) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 16584178
    51189 2fkz:A (2.0) BS03 HEM 1.16.3.1 GO:0004322 ... P22759 16584178
    51190 2fkz:B (2.0) BS01 FE2 1.16.3.1 GO:0004322 ... P22759 16584178
    51191 2fkz:B (2.0) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 16584178
    51192 2fkz:B (2.0) BS03 FE2 1.16.3.1 GO:0004322 ... P22759 16584178
    51193 2fkz:B (2.0) BS04 HEM 1.16.3.1 GO:0004322 ... P22759 16584178
    51194 2fkz:C (2.0) BS01 FE2 1.16.3.1 GO:0004322 ... P22759 16584178
    51195 2fkz:C (2.0) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 16584178
    51196 2fkz:C (2.0) BS03 HEM 1.16.3.1 GO:0004322 ... P22759 16584178
    51197 2fkz:D (2.0) BS01 FE2 1.16.3.1 GO:0004322 ... P22759 16584178
    51198 2fkz:D (2.0) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 16584178
    51199 2fkz:D (2.0) BS03 FE2 1.16.3.1 GO:0004322 ... P22759 16584178
    51200 2fkz:D (2.0) BS04 HEM 1.16.3.1 GO:0004322 ... P22759 16584178
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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