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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    50001 2ef5:B (2.0) BS02 MN 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    50002 2ef5:D (2.0) BS01 MN 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    50003 2ef5:D (2.0) BS02 MN 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    50004 2ef5:D (2.0) BS03 LYS 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    50005 2ef5:E (2.0) BS01 MN 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    50006 2ef5:E (2.0) BS02 MN 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    50007 2ef5:E (2.0) BS03 LYS 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    50008 2ef5:F (2.0) BS01 MN 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    50009 2ef5:F (2.0) BS02 MN 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    50010 2ef5:F (2.0) BS03 LYS 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    50011 2ef5:G (2.0) BS01 MN 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    50012 2ef5:G (2.0) BS02 MN 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    50013 2ef5:G (2.0) BS03 LYS 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    50014 2ef9:A (2.0) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    50015 2ef9:A (2.0) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=14.18uM
    50016 2ef9:B (2.0) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    50017 2ef9:B (2.0) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=14.18uM
    50018 2efc:B (2.09) BS01 GDP ? GO:0003924 ... Q9SN68 20833725
    50019 2efc:D (2.09) BS01 GDP ? GO:0003924 ... Q9SN68 20833725
    50020 2efe:B (2.08) BS01 GNH ? GO:0003924 ... Q9SN68 20833725
    50021 2efe:D (2.08) BS01 GNH ? GO:0003924 ... Q9SN68 20833725
    50022 2eff:A (1.8) BS01 CO ? GO:0005506 ... P27838 17651435
    50023 2efg:A (2.6) BS01 GDP ? GO:0003746 ... Q5SHN5 8070396
    50024 2efh:B (2.1) BS01 GDP ? GO:0003924 ... Q9SN68 20833725
    50025 2efh:D (2.1) BS01 GDP ? GO:0003924 ... Q9SN68 20833725
    50026 2efp:A (2.2) BS01 GLN ? GO:0003677 ... F9VNT4 18653535
    50027 2efp:A (2.2) BS02 GLN ? GO:0003677 ... F9VNT4 18653535
    50028 2efq:A (2.3) BS01 GLN ? GO:0003677 ... F9VNT4 18653535
    50029 2eft:A (2.0) BS01 COA 2.3.1.180 GO:0004315 ... P0A6R0 17524982
    50030 2eft:B (2.0) BS01 MEE 2.3.1.180 GO:0004315 ... P0A6R0 17524982
    50031 2efy:A (2.35) BS01 PLP 2.5.1.47 GO:0004124 ... Q5SLE6 N/A
    50032 2efy:A (2.35) BS02 4AT 2.5.1.47 GO:0004124 ... Q5SLE6 N/A
    50033 2efy:B (2.35) BS01 PLP 2.5.1.47 GO:0004124 ... Q5SLE6 N/A
    50034 2efy:B (2.35) BS02 4AT 2.5.1.47 GO:0004124 ... Q5SLE6 N/A
    50035 2eg2:A (1.72) BS01 ATP ? GO:0000166 ... O66513 N/A
    50036 2eg6:A (1.7) BS01 ZN 3.5.2.3 GO:0004151 ... P05020 17550785
    50037 2eg6:A (1.7) BS02 ZN 3.5.2.3 GO:0004151 ... P05020 17550785
    50038 2eg6:B (1.7) BS01 ZN 3.5.2.3 GO:0004151 ... P05020 17550785
    50039 2eg6:B (1.7) BS02 ZN 3.5.2.3 GO:0004151 ... P05020 17550785
    50040 2eg7:A (2.0) BS01 ZN 3.5.2.3 GO:0004151 ... P05020 17550785
    50041 2eg7:A (2.0) BS02 ZN 3.5.2.3 GO:0004151 ... P05020 17550785
    50042 2eg7:A (2.0) BS03 OTD 3.5.2.3 GO:0004151 ... P05020 17550785 MOAD: Ki=1.3uM
    PDBbind: -logKd/Ki=5.89, Ki=1.3uM
    50043 2eg7:B (2.0) BS01 ZN 3.5.2.3 GO:0004151 ... P05020 17550785
    50044 2eg7:B (2.0) BS02 ZN 3.5.2.3 GO:0004151 ... P05020 17550785
    50045 2eg7:B (2.0) BS03 OTD 3.5.2.3 GO:0004151 ... P05020 17550785 MOAD: Ki=1.3uM
    50046 2eg8:A (2.2) BS01 ZN 3.5.2.3 GO:0004151 ... P05020 17550785
    50047 2eg8:A (2.2) BS02 ZN 3.5.2.3 GO:0004151 ... P05020 17550785
    50048 2eg8:A (2.2) BS03 FOT 3.5.2.3 GO:0004151 ... P05020 17550785 MOAD: Ki=31.8uM
    PDBbind: -logKd/Ki=4.50, Ki=31.8uM
    50049 2eg8:B (2.2) BS01 ZN 3.5.2.3 GO:0004151 ... P05020 17550785
    50050 2eg8:B (2.2) BS02 ZN 3.5.2.3 GO:0004151 ... P05020 17550785
    50051 2eg8:B (2.2) BS03 FOT 3.5.2.3 GO:0004151 ... P05020 17550785 MOAD: Ki=31.8uM
    50052 2egd:A (1.8) BS01 CA ? GO:0001819 ... Q99584 18259052
    50053 2egd:A (1.8) BS02 CA ? GO:0001819 ... Q99584 18259052
    50054 2egd:B (1.8) BS01 CA ? GO:0001819 ... Q99584 18259052
    50055 2egd:B (1.8) BS02 CA ? GO:0001819 ... Q99584 18259052
    50056 2egh:A (2.2) BS01 MG 1.1.1.267 GO:0008299 ... P45568 17554164
    50057 2egh:A (2.2) BS02 FOM 1.1.1.267 GO:0008299 ... P45568 17554164 MOAD: Ki=38nM
    BindingDB: IC50=30nM
    50058 2egh:A (2.2) BS03 NDP 1.1.1.267 GO:0008299 ... P45568 17554164
    50059 2egh:B (2.2) BS01 MG 1.1.1.267 GO:0008299 ... P45568 17554164
    50060 2egh:B (2.2) BS02 FOM 1.1.1.267 GO:0008299 ... P45568 17554164 MOAD: Ki=38nM
    BindingDB: IC50=30nM
    50061 2egh:B (2.2) BS03 NDP 1.1.1.267 GO:0008299 ... P45568 17554164
    50062 2egv:A (1.45) BS01 SAM 2.1.1.193 GO:0005737 ... O66552 N/A
    50063 2egv:B (1.45) BS01 SAM 2.1.1.193 GO:0005737 ... O66552 N/A
    50064 2egw:A (2.8) BS01 SAH 2.1.1.193 GO:0005737 ... O66552 N/A
    50065 2egw:B (2.8) BS01 SAH 2.1.1.193 GO:0005737 ... O66552 N/A
    50066 2eh6:A (1.9) BS01 PLP 2.6.1.11 GO:0003992 ... O66442 N/A
    50067 2eh6:B (1.9) BS01 PLP 2.6.1.11 GO:0003992 ... O66442 N/A
    50068 2eh9:A (2.0) BS01 ZN ? GO:0003677 ... Q8NFD5 N/A
    50069 2eh9:A (2.0) BS02 ZN ? GO:0003677 ... Q8NFD5 N/A
    50070 2ehb:A (2.1) BS01 CA ? GO:0004723 ... O81223 17499048
    50071 2ehb:A (2.1) BS02 CA ? GO:0004723 ... O81223 17499048
    50072 2ehd:A (2.4) BS01 CO ? GO:0016020 ... Q5SK86 N/A
    50073 2ehd:B (2.4) BS01 CO ? GO:0016020 ... Q5SK86 N/A
    50074 2ehq:A (1.55) BS01 NAP 1.2.1.88 GO:0000166 ... Q5SI02 17554163
    50075 2ehq:B (1.55) BS01 NAP 1.2.1.88 GO:0000166 ... Q5SI02 17554163
    50076 2eht:A (1.4) BS01 ZN ? GO:0000035 ... O67611 N/A
    50077 2ehu:A (1.8) BS01 SER 1.2.1.88 GO:0000166 ... Q5SI02 N/A
    50078 2ehu:A (1.8) BS02 NAD 1.2.1.88 GO:0000166 ... Q5SI02 N/A
    50079 2ehu:B (1.8) BS01 SER 1.2.1.88 GO:0000166 ... Q5SI02 N/A
    50080 2ehu:B (1.8) BS02 NAD 1.2.1.88 GO:0000166 ... Q5SI02 N/A
    50081 2ei4:A (2.1) BS01 RET ? GO:0005216 ... P29563 18082767
    50082 2ei4:A (2.1) BS02 22B ? GO:0005216 ... P29563 18082767
    50083 2eib:A (2.1) BS01 CU 1.1.3.9 GO:0005576 ... P0CS93 17385891
    50084 2eic:A (2.8) BS01 CU1 1.1.3.9 GO:0005576 ... P0CS93 17385891
    50085 2eid:A (2.2) BS01 CU 1.1.3.9 GO:0005576 ... P0CS93 17385891
    50086 2eie:A (1.8) BS01 AZI 1.1.3.9 GO:0005576 ... P0CS93 17385891
    50087 2eie:A (1.8) BS02 CU 1.1.3.9 GO:0005576 ... P0CS93 17385891
    50088 2eii:A (1.88) BS01 VAL 1.2.1.88 GO:0000166 ... Q5SI02 N/A
    50089 2eii:A (1.88) BS02 NAD 1.2.1.88 GO:0000166 ... Q5SI02 N/A
    50090 2eii:B (1.88) BS01 VAL 1.2.1.88 GO:0000166 ... Q5SI02 N/A
    50091 2eii:B (1.88) BS02 NAD 1.2.1.88 GO:0000166 ... Q5SI02 N/A
    50092 2eij:A (1.9) BS01 CU 7.1.1.9 GO:0004129 ... P00396 17470809
    50093 2eij:A (1.9) BS02 MG 7.1.1.9 GO:0004129 ... P00396 17470809
    50094 2eij:A (1.9) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    50095 2eij:A (1.9) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    50096 2eij:B (1.9) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17470809
    50097 2eij:B (1.9) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 17470809
    50098 2eij:C (1.9) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 17470809
    50099 2eij:C (1.9) BS02 ZN 7.1.1.9 GO:0004129 ... P00415 17470809
    50100 2eij:F (1.9) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 17470809
    50101 2eij:G (1.9) BS01 DMU 1.9.3.1 GO:0005743 ... P07471 17470809
    50102 2eij:M (1.9) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 17470809
    50103 2eij:N (1.9) BS01 CU 7.1.1.9 GO:0004129 ... P00396 17470809
    50104 2eij:N (1.9) BS02 MG 7.1.1.9 GO:0004129 ... P00396 17470809
    50105 2eij:N (1.9) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    50106 2eij:N (1.9) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    50107 2eij:O (1.9) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17470809
    50108 2eij:O (1.9) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 17470809
    50109 2eij:P (1.9) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 17470809
    50110 2eij:P (1.9) BS02 ZN 7.1.1.9 GO:0004129 ... P00415 17470809
    50111 2eij:S (1.9) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 17470809
    50112 2eij:T (1.9) BS01 DMU 1.9.3.1 GO:0005743 ... P07471 17470809
    50113 2eij:Z (1.9) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 17470809
    50114 2eik:A (2.1) BS01 CU 7.1.1.9 GO:0004129 ... P00396 17470809
    50115 2eik:A (2.1) BS02 MG 7.1.1.9 GO:0004129 ... P00396 17470809
    50116 2eik:A (2.1) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    50117 2eik:A (2.1) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    50118 2eik:B (2.1) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17470809
    50119 2eik:B (2.1) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 17470809
    50120 2eik:C (2.1) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 17470809
    50121 2eik:F (2.1) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 17470809
    50122 2eik:G (2.1) BS01 DMU 1.9.3.1 GO:0005743 ... P07471 17470809
    50123 2eik:M (2.1) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 17470809
    50124 2eik:N (2.1) BS01 CU 7.1.1.9 GO:0004129 ... P00396 17470809
    50125 2eik:N (2.1) BS02 MG 7.1.1.9 GO:0004129 ... P00396 17470809
    50126 2eik:N (2.1) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    50127 2eik:N (2.1) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    50128 2eik:O (2.1) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17470809
    50129 2eik:O (2.1) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 17470809
    50130 2eik:P (2.1) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 17470809
    50131 2eik:S (2.1) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 17470809
    50132 2eik:T (2.1) BS01 DMU 1.9.3.1 GO:0005743 ... P07471 17470809
    50133 2eik:Z (2.1) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 17470809
    50134 2eil:A (2.1) BS01 CU 7.1.1.9 GO:0004129 ... P00396 17470809
    50135 2eil:A (2.1) BS02 MG 7.1.1.9 GO:0004129 ... P00396 17470809
    50136 2eil:A (2.1) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    50137 2eil:A (2.1) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    50138 2eil:B (2.1) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17470809
    50139 2eil:B (2.1) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 17470809
    50140 2eil:C (2.1) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 17470809
    50141 2eil:F (2.1) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 17470809
    50142 2eil:G (2.1) BS01 DMU 1.9.3.1 GO:0005743 ... P07471 17470809
    50143 2eil:M (2.1) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 17470809
    50144 2eil:N (2.1) BS01 CU 7.1.1.9 GO:0004129 ... P00396 17470809
    50145 2eil:N (2.1) BS02 MG 7.1.1.9 GO:0004129 ... P00396 17470809
    50146 2eil:N (2.1) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    50147 2eil:N (2.1) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    50148 2eil:O (2.1) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17470809
    50149 2eil:O (2.1) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 17470809
    50150 2eil:P (2.1) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 17470809
    50151 2eil:S (2.1) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 17470809
    50152 2eil:T (2.1) BS01 DMU 1.9.3.1 GO:0005743 ... P07471 17470809
    50153 2eil:Z (2.1) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 17470809
    50154 2eim:A (2.6) BS01 CU 7.1.1.9 GO:0004129 ... P00396 17470809
    50155 2eim:A (2.6) BS02 MG 7.1.1.9 GO:0004129 ... P00396 17470809
    50156 2eim:A (2.6) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    50157 2eim:A (2.6) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    50158 2eim:B (2.6) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17470809
    50159 2eim:B (2.6) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 17470809
    50160 2eim:C (2.6) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 17470809
    50161 2eim:C (2.6) BS02 ZN 7.1.1.9 GO:0004129 ... P00415 17470809
    50162 2eim:F (2.6) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 17470809
    50163 2eim:M (2.6) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 17470809
    50164 2eim:N (2.6) BS01 CU 7.1.1.9 GO:0004129 ... P00396 17470809
    50165 2eim:N (2.6) BS02 MG 7.1.1.9 GO:0004129 ... P00396 17470809
    50166 2eim:N (2.6) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    50167 2eim:N (2.6) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    50168 2eim:O (2.6) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17470809
    50169 2eim:O (2.6) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 17470809
    50170 2eim:P (2.6) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 17470809
    50171 2eim:P (2.6) BS02 ZN 7.1.1.9 GO:0004129 ... P00415 17470809
    50172 2eim:S (2.6) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 17470809
    50173 2eim:T (2.6) BS01 DMU 1.9.3.1 GO:0005743 ... P07471 17470809
    50174 2eim:Z (2.6) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 17470809
    50175 2ein:A (2.7) BS01 CU 7.1.1.9 GO:0004129 ... P00396 17470809
    50176 2ein:A (2.7) BS02 MG 7.1.1.9 GO:0004129 ... P00396 17470809
    50177 2ein:A (2.7) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    50178 2ein:A (2.7) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    50179 2ein:B (2.7) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17470809
    50180 2ein:B (2.7) BS02 ZN 7.1.1.9 GO:0004129 ... P68530 17470809
    50181 2ein:B (2.7) BS03 CUA 7.1.1.9 GO:0004129 ... P68530 17470809
    50182 2ein:C (2.7) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 17470809
    50183 2ein:C (2.7) BS02 ZN 7.1.1.9 GO:0004129 ... P00415 17470809
    50184 2ein:F (2.7) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 17470809
    50185 2ein:F (2.7) BS02 ZN 1.9.3.1 GO:0005740 ... P00428 17470809
    50186 2ein:G (2.7) BS01 DMU 1.9.3.1 GO:0005743 ... P07471 17470809
    50187 2ein:L (2.7) BS01 ZN 1.9.3.1 GO:0006123 ... P00430 17470809
    50188 2ein:M (2.7) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 17470809
    50189 2ein:N (2.7) BS01 CU 7.1.1.9 GO:0004129 ... P00396 17470809
    50190 2ein:N (2.7) BS02 MG 7.1.1.9 GO:0004129 ... P00396 17470809
    50191 2ein:N (2.7) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    50192 2ein:N (2.7) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    50193 2ein:O (2.7) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17470809
    50194 2ein:O (2.7) BS02 ZN 7.1.1.9 GO:0004129 ... P68530 17470809
    50195 2ein:O (2.7) BS03 CUA 7.1.1.9 GO:0004129 ... P68530 17470809
    50196 2ein:P (2.7) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 17470809
    50197 2ein:P (2.7) BS02 ZN 7.1.1.9 GO:0004129 ... P00415 17470809
    50198 2ein:Q (2.7) BS01 DMU 1.9.3.1 GO:0006123 ... P00423 17470809
    50199 2ein:S (2.7) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 17470809
    50200 2ein:S (2.7) BS02 ZN 1.9.3.1 GO:0005740 ... P00428 17470809
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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