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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    49601 2e39:A (1.3) BS03 CA 1.11.1.7 GO:0000302 ... P28313 17372351
    49602 2e39:A (1.3) BS04 HEM 1.11.1.7 GO:0000302 ... P28313 17372351
    49603 2e3a:A (1.3) BS01 MAN 1.11.1.7 GO:0000302 ... P28313 17372351
    49604 2e3a:A (1.3) BS02 CA 1.11.1.7 GO:0000302 ... P28313 17372351
    49605 2e3a:A (1.3) BS03 CA 1.11.1.7 GO:0000302 ... P28313 17372351
    49606 2e3a:A (1.3) BS04 HEM 1.11.1.7 GO:0000302 ... P28313 17372351
    49607 2e3b:A (1.3) BS01 MAN 1.11.1.7 GO:0000302 ... P28313 17372351
    49608 2e3b:A (1.3) BS02 CA 1.11.1.7 GO:0000302 ... P28313 17372351
    49609 2e3b:A (1.3) BS03 CA 1.11.1.7 GO:0000302 ... P28313 17372351
    49610 2e3b:A (1.3) BS04 HEM 1.11.1.7 GO:0000302 ... P28313 17372351
    49611 2e3b:A (1.3) BS05 HOA 1.11.1.7 GO:0000302 ... P28313 17372351
    49612 2e3t:A (2.28) BS01 BCT 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 17301076
    49613 2e3t:A (2.28) BS02 CA 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 17301076
    49614 2e3t:A (2.28) BS03 CA 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 17301076
    49615 2e3t:A (2.28) BS04 FES 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 17301076
    49616 2e3t:A (2.28) BS05 FES 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 17301076
    49617 2e3t:A (2.28) BS06 FAD 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 17301076
    49618 2e3t:A (2.28) BS07 URC 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 17301076
    49619 2e3t:B (2.28) BS01 BCT 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 17301076
    49620 2e3t:B (2.28) BS02 CA 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 17301076
    49621 2e3t:B (2.28) BS03 CA 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 17301076
    49622 2e3t:B (2.28) BS04 FES 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 17301076
    49623 2e3t:B (2.28) BS05 FES 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 17301076
    49624 2e3t:B (2.28) BS06 FAD 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 17301076
    49625 2e3t:B (2.28) BS07 URC 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 17301076
    49626 2e3x:B (2.91) BS01 CA ? GO:0005576 ... Q4PRD2 18060879
    49627 2e41:A (1.75) BS01 BTX 6.3.4.15 GO:0004077 ... O57883 18372281
    49628 2e41:B (1.75) BS01 BTX 6.3.4.15 GO:0004077 ... O57883 18372281
    49629 2e48:A (2.9) BS01 FAD 1.4.3.3 GO:0003884 ... P14920 17303072
    49630 2e48:B (2.9) BS01 FAD 1.4.3.3 GO:0003884 ... P14920 17303072
    49631 2e48:C (2.9) BS01 FAD 1.4.3.3 GO:0003884 ... P14920 17303072
    49632 2e48:D (2.9) BS01 FAD 1.4.3.3 GO:0003884 ... P14920 17303072
    49633 2e49:A (3.2) BS01 FAD 1.4.3.3 GO:0003884 ... P14920 17303072
    49634 2e49:A (3.2) BS02 MH6 1.4.3.3 GO:0003884 ... P14920 17303072
    49635 2e49:B (3.2) BS01 FAD 1.4.3.3 GO:0003884 ... P14920 17303072
    49636 2e49:B (3.2) BS02 MH6 1.4.3.3 GO:0003884 ... P14920 17303072
    49637 2e49:C (3.2) BS01 FAD 1.4.3.3 GO:0003884 ... P14920 17303072
    49638 2e49:C (3.2) BS02 MH6 1.4.3.3 GO:0003884 ... P14920 17303072
    49639 2e49:D (3.2) BS01 FAD 1.4.3.3 GO:0003884 ... P14920 17303072
    49640 2e49:D (3.2) BS02 MH6 1.4.3.3 GO:0003884 ... P14920 17303072
    49641 2e4a:A (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P14920 17303072
    49642 2e4a:A (2.6) BS02 BE2 1.4.3.3 GO:0003884 ... P14920 17303072
    49643 2e4a:B (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P14920 17303072
    49644 2e4a:B (2.6) BS02 BE2 1.4.3.3 GO:0003884 ... P14920 17303072
    49645 2e4a:C (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P14920 17303072
    49646 2e4a:C (2.6) BS02 BE2 1.4.3.3 GO:0003884 ... P14920 17303072
    49647 2e4a:D (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P14920 17303072
    49648 2e4a:D (2.6) BS02 BE2 1.4.3.3 GO:0003884 ... P14920 17303072
    49649 2e4u:A (2.35) BS01 GLU ? GO:0004930 ... P31422 17360426
    49650 2e4u:B (2.35) BS01 GLU ? GO:0004930 ... P31422 17360426
    49651 2e4v:A (2.4) BS01 2CG ? GO:0004930 ... P31422 17360426 BindingDB: EC50=300nM
    49652 2e4v:B (2.4) BS01 2CG ? GO:0004930 ... P31422 17360426 BindingDB: EC50=300nM
    49653 2e4w:A (2.4) BS01 C5A ? GO:0004930 ... P31422 17360426
    49654 2e4w:B (2.4) BS01 C5A ? GO:0004930 ... P31422 17360426
    49655 2e4x:A (2.75) BS01 C5B ? GO:0004930 ... P31422 17360426 BindingDB: EC50=8000nM
    49656 2e4x:B (2.75) BS01 C5B ? GO:0004930 ... P31422 17360426 BindingDB: EC50=8000nM
    49657 2e4y:A (3.4) BS01 52A ? GO:0004930 ... P31422 17360426 BindingDB: EC50=1700nM
    49658 2e4y:B (3.4) BS01 52A ? GO:0004930 ... P31422 17360426 BindingDB: EC50=1700nM
    49659 2e50:A (2.3) BS01 GLC ? GO:0005634 ... Q01105 17360516
    49660 2e50:A (2.3) BS02 GLC ? GO:0005634 ... Q01105 17360516
    49661 2e50:B (2.3) BS01 GLC ? GO:0005634 ... Q01105 17360516
    49662 2e50:P (2.3) BS01 GLC ? GO:0005634 ... Q01105 17360516
    49663 2e50:P (2.3) BS02 GLC ? GO:0005634 ... Q01105 17360516
    49664 2e50:P (2.3) BS03 GLC ? GO:0005634 ... Q01105 17360516
    49665 2e50:Q (2.3) BS01 GLC ? GO:0005634 ... Q01105 17360516
    49666 2e54:A (1.5) BS01 PLP 2.6.1.11 GO:0003992 ... Q9X2A5 N/A
    49667 2e5a:A (2.1) BS01 MG 2.3.1.-
    2.3.1.200
    GO:0005737 ... O46419 17570395
    49668 2e5a:A (2.1) BS02 PO4 2.3.1.-
    2.3.1.200
    GO:0005737 ... O46419 17570395
    49669 2e5a:A (2.1) BS03 LAQ 2.3.1.-
    2.3.1.200
    GO:0005737 ... O46419 17570395
    49670 2e5c:A (2.2) BS01 PRP 2.4.2.12 GO:0005125 ... P43490 19819904
    49671 2e5c:A (2.2) BS02 PRP 2.4.2.12 GO:0005125 ... P43490 19819904
    49672 2e5c:B (2.2) BS01 PRP 2.4.2.12 GO:0005125 ... P43490 19819904
    49673 2e5c:B (2.2) BS02 PRP 2.4.2.12 GO:0005125 ... P43490 19819904
    49674 2e5d:A (2.0) BS01 NCA 2.4.2.12 GO:0005125 ... P43490 19819904
    49675 2e5d:A (2.0) BS02 NCA 2.4.2.12 GO:0005125 ... P43490 19819904
    49676 2e5d:B (2.0) BS01 NCA 2.4.2.12 GO:0005125 ... P43490 19819904
    49677 2e5d:B (2.0) BS02 NCA 2.4.2.12 GO:0005125 ... P43490 19819904
    49678 2e5l:B (3.3) BS01 rna ? GO:0003735 ... P80371 17355865
    49679 2e5l:C (3.3) BS01 rna ? GO:0003676 ... P80372 17355865
    49680 2e5l:D (3.3) BS01 rna ? GO:0003723 ... P80373 17355865
    49681 2e5l:D (3.3) BS02 ZN ? GO:0003723 ... P80373 17355865
    49682 2e5l:E (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 17355865
    49683 2e5l:F (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 17355865
    49684 2e5l:G (3.3) BS01 rna ? GO:0000028 ... P17291 17355865
    49685 2e5l:H (3.3) BS01 rna ? GO:0003735 ... P0DOY9 17355865
    49686 2e5l:I (3.3) BS01 rna ? GO:0000049 ... P80374 17355865
    49687 2e5l:J (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 17355865
    49688 2e5l:K (3.3) BS01 rna ? GO:0003735 ... P80376 17355865
    49689 2e5l:L (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 17355865
    49690 2e5l:M (3.3) BS01 rna ? GO:0000049 ... P80377 17355865
    49691 2e5l:N (3.3) BS01 rna ? GO:0003735 ... P0DOY6 17355865
    49692 2e5l:N (3.3) BS02 ZN ? GO:0003735 ... P0DOY6 17355865
    49693 2e5l:O (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 17355865
    49694 2e5l:P (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 17355865
    49695 2e5l:Q (3.3) BS01 rna ? GO:0003735 ... P0DOY7 17355865
    49696 2e5l:R (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 17355865
    49697 2e5l:S (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 17355865
    49698 2e5l:T (3.3) BS01 rna ? GO:0003723 ... P80380 17355865
    49699 2e5v:A (2.09) BS01 FAD 1.4.3.16 GO:0000166 ... Q972D2 18226609
    49700 2e5v:B (2.09) BS01 FAD 1.4.3.16 GO:0000166 ... Q972D2 18226609
    49701 2e5w:A (2.0) BS01 AG3 2.5.1.16 GO:0003824 ... O57950 N/A
    49702 2e5w:A (2.0) BS02 MTA 2.5.1.16 GO:0003824 ... O57950 N/A
    49703 2e5w:C (2.0) BS01 AG3 2.5.1.16 GO:0003824 ... O57950 N/A
    49704 2e5w:C (2.0) BS02 MTA 2.5.1.16 GO:0003824 ... O57950 N/A
    49705 2e5x:A (2.0) BS01 ITT 3.6.1.66 GO:0000166 ... O59580 N/A
    49706 2e5y:A (1.92) BS01 ATP 3.6.3.14 GO:0015986 ... P07678 17581881 MOAD: Kd=22mM
    PDBbind: -logKd/Ki=5.85, Kd=1.4uM
    49707 2e5y:B (1.92) BS01 ATP 3.6.3.14 GO:0015986 ... P07678 17581881 MOAD: Kd=22mM
    PDBbind: -logKd/Ki=5.85, Kd=1.4uM
    49708 2e68:A (1.38) BS01 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    49709 2e68:A (1.38) BS02 DOR 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    49710 2e68:B (1.38) BS01 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    49711 2e68:B (1.38) BS02 DOR 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    49712 2e6a:A (1.64) BS01 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    49713 2e6a:B (1.64) BS01 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    49714 2e6b:A (2.5) BS01 MG 3.1.3.5 GO:0000166 ... Q53W92 17561111
    49715 2e6b:A (2.5) BS02 WO4 3.1.3.5 GO:0000166 ... Q53W92 17561111
    49716 2e6b:B (2.5) BS01 MG 3.1.3.5 GO:0000166 ... Q53W92 17561111
    49717 2e6b:B (2.5) BS02 WO4 3.1.3.5 GO:0000166 ... Q53W92 17561111
    49718 2e6b:C (2.5) BS01 MG 3.1.3.5 GO:0000166 ... Q53W92 17561111
    49719 2e6b:C (2.5) BS02 WO4 3.1.3.5 GO:0000166 ... Q53W92 17561111
    49720 2e6b:D (2.5) BS01 MG 3.1.3.5 GO:0000166 ... Q53W92 17561111
    49721 2e6b:D (2.5) BS02 WO4 3.1.3.5 GO:0000166 ... Q53W92 17561111
    49722 2e6c:A (2.05) BS01 MN 3.1.3.5 GO:0000166 ... Q53W92 17561111
    49723 2e6c:B (2.05) BS01 MN 3.1.3.5 GO:0000166 ... Q53W92 17561111
    49724 2e6c:C (2.05) BS01 MN 3.1.3.5 GO:0000166 ... Q53W92 17561111
    49725 2e6c:D (2.05) BS01 MN 3.1.3.5 GO:0000166 ... Q53W92 17561111
    49726 2e6d:A (1.94) BS01 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 18808149
    49727 2e6d:A (1.94) BS02 FUM 1.3.98.1 GO:0004152 ... Q4D3W2 18808149
    49728 2e6d:B (1.94) BS01 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 18808149
    49729 2e6d:B (1.94) BS02 FUM 1.3.98.1 GO:0004152 ... Q4D3W2 18808149
    49730 2e6f:A (1.26) BS01 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    49731 2e6f:A (1.26) BS02 OXC 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    49732 2e6f:B (1.26) BS01 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    49733 2e6f:B (1.26) BS02 OXC 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    49734 2e6h:A (2.1) BS01 MN 3.1.3.5 GO:0000166 ... Q53W92 17561111
    49735 2e6h:B (2.1) BS01 MN 3.1.3.5 GO:0000166 ... Q53W92 17561111
    49736 2e6h:C (2.1) BS01 MN 3.1.3.5 GO:0000166 ... Q53W92 17561111
    49737 2e6h:D (2.1) BS01 MN 3.1.3.5 GO:0000166 ... Q53W92 17561111
    49738 2e6v:A (2.5) BS01 BMA ? GO:0016020 ... P49256 17652092
    49739 2e6v:A (2.5) BS02 MAN ? GO:0016020 ... P49256 17652092
    49740 2e6v:A (2.5) BS03 MAN ? GO:0016020 ... P49256 17652092
    49741 2e6v:A (2.5) BS04 CA ? GO:0016020 ... P49256 17652092
    49742 2e6v:B (2.5) BS01 MAN ? GO:0016020 ... P49256 17652092
    49743 2e6v:B (2.5) BS02 MAN ? GO:0016020 ... P49256 17652092
    49744 2e6v:B (2.5) BS03 CA ? GO:0016020 ... P49256 17652092
    49745 2e6v:C (2.5) BS01 MAN ? GO:0016020 ... P49256 17652092
    49746 2e6v:C (2.5) BS02 CA ? GO:0016020 ... P49256 17652092
    49747 2e6v:D (2.5) BS01 CA ? GO:0016020 ... P49256 17652092
    49748 2e6v:E (2.5) BS01 CA ? GO:0016020 ... P49256 17652092
    49749 2e6y:A (1.6) BS01 U5P 4.1.1.23 GO:0004590 ... O26232 17290979
    49750 2e6y:A (1.6) BS02 U5P 4.1.1.23 GO:0004590 ... O26232 17290979
    49751 2e6y:B (1.6) BS01 U5P 4.1.1.23 GO:0004590 ... O26232 17290979
    49752 2e6y:B (1.6) BS02 U5P 4.1.1.23 GO:0004590 ... O26232 17290979
    49753 2e74:A (3.0) BS01 peptide ? GO:0009055 ... P83791 17498743
    49754 2e74:A (3.0) BS02 HEM ? GO:0009055 ... P83791 17498743
    49755 2e74:A (3.0) BS03 HEM ? GO:0009055 ... P83791 17498743
    49756 2e74:A (3.0) BS04 HEM ? GO:0009055 ... P83791 17498743
    49757 2e74:B (3.0) BS01 peptide ? GO:0009055 ... P83792 17498743
    49758 2e74:B (3.0) BS02 HEM ? GO:0009055 ... P83792 17498743
    49759 2e74:B (3.0) BS03 CLA ? GO:0009055 ... P83792 17498743
    49760 2e74:C (3.0) BS01 peptide ? GO:0005506 ... P83793 17498743
    49761 2e74:C (3.0) BS02 HEM ? GO:0005506 ... P83793 17498743
    49762 2e74:D (3.0) BS01 FES 7.1.1.6 GO:0005886 ... P83794 17498743
    49763 2e74:E (3.0) BS01 peptide ? GO:0009055 ... P83795 17498743
    49764 2e74:F (3.0) BS01 peptide ? GO:0009055 ... P83796 17498743
    49765 2e75:A (3.55) BS01 HEM ? GO:0009055 ... P83791 17498743
    49766 2e75:A (3.55) BS02 HEM ? GO:0009055 ... P83791 17498743
    49767 2e75:A (3.55) BS03 HEM ? GO:0009055 ... P83791 17498743
    49768 2e75:A (3.55) BS04 QNO ? GO:0009055 ... P83791 17498743
    49769 2e75:A (3.55) BS05 CLA ? GO:0009055 ... P83791 17498743
    49770 2e75:B (3.55) BS01 peptide ? GO:0009055 ... P83792 17498743
    49771 2e75:B (3.55) BS02 HEM ? GO:0009055 ... P83792 17498743
    49772 2e75:B (3.55) BS03 QNO ? GO:0009055 ... P83792 17498743
    49773 2e75:B (3.55) BS04 CLA ? GO:0009055 ... P83792 17498743
    49774 2e75:C (3.55) BS01 peptide ? GO:0005506 ... P83793 17498743
    49775 2e75:C (3.55) BS02 HEM ? GO:0005506 ... P83793 17498743
    49776 2e75:D (3.55) BS01 FES 7.1.1.6 GO:0005886 ... P83794 17498743
    49777 2e75:E (3.55) BS01 peptide ? GO:0009055 ... P83795 17498743
    49778 2e75:F (3.55) BS01 peptide ? GO:0009055 ... P83796 17498743
    49779 2e76:A (3.41) BS01 HEM ? GO:0009055 ... P83791 17498743
    49780 2e76:A (3.41) BS02 HEM ? GO:0009055 ... P83791 17498743
    49781 2e76:A (3.41) BS03 HEM ? GO:0009055 ... P83791 17498743
    49782 2e76:A (3.41) BS04 TDS ? GO:0009055 ... P83791 17498743
    49783 2e76:B (3.41) BS01 peptide ? GO:0009055 ... P83792 17498743
    49784 2e76:B (3.41) BS02 HEM ? GO:0009055 ... P83792 17498743
    49785 2e76:B (3.41) BS03 CLA ? GO:0009055 ... P83792 17498743
    49786 2e76:B (3.41) BS04 TDS ? GO:0009055 ... P83792 17498743
    49787 2e76:B (3.41) BS05 TDS ? GO:0009055 ... P83792 17498743
    49788 2e76:C (3.41) BS01 peptide ? GO:0005506 ... P83793 17498743
    49789 2e76:C (3.41) BS02 HEM ? GO:0005506 ... P83793 17498743
    49790 2e76:D (3.41) BS01 FES 7.1.1.6 GO:0005886 ... P83794 17498743
    49791 2e76:F (3.41) BS01 peptide ? GO:0009055 ... P83796 17498743
    49792 2e76:G (3.41) BS01 peptide ? GO:0009512 ... P83797 17498743
    49793 2e7e:A (1.85) BS01 CYN 1.14.14.18 GO:0001525 ... P06762 17554165
    49794 2e7e:A (1.85) BS02 HEM 1.14.14.18 GO:0001525 ... P06762 17554165
    49795 2e7f:A (2.2) BS01 CA 2.1.1.258 GO:0005509 ... Q46389 17172470
    49796 2e7f:A (2.2) BS02 C2F 2.1.1.258 GO:0005509 ... Q46389 17172470 MOAD: Kd=0.79uM
    PDBbind: -logKd/Ki=6.10, Kd=0.79uM
    49797 2e7f:B (2.2) BS01 CA 2.1.1.258 GO:0005509 ... Q46389 17172470
    49798 2e7f:B (2.2) BS02 C2F 2.1.1.258 GO:0005509 ... Q46389 17172470 MOAD: Kd=0.79uM
    49799 2e7p:A (2.1) BS01 FES ? GO:0005737 ... Q5PSJ1 17460036
    49800 2e7p:A (2.1) BS02 GSH ? GO:0005737 ... Q5PSJ1 17460036

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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