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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    48601 2d3c:D (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    48602 2d3c:D (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    48603 2d3c:E (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48604 2d3c:E (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48605 2d3c:E (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48606 2d3c:E (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    48607 2d3c:E (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    48608 2d3c:F (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48609 2d3c:F (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48610 2d3c:F (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48611 2d3c:F (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    48612 2d3c:F (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    48613 2d3c:G (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48614 2d3c:G (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48615 2d3c:G (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48616 2d3c:G (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    48617 2d3c:G (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    48618 2d3c:H (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48619 2d3c:H (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48620 2d3c:H (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48621 2d3c:H (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    48622 2d3c:H (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    48623 2d3c:I (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48624 2d3c:I (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48625 2d3c:I (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48626 2d3c:I (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    48627 2d3c:I (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    48628 2d3c:J (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48629 2d3c:J (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48630 2d3c:J (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48631 2d3c:J (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    48632 2d3c:J (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    48633 2d3i:A (2.15) BS01 BCT ? GO:0005506 ... P02789 16301797
    48634 2d3i:A (2.15) BS02 BCT ? GO:0005506 ... P02789 16301797
    48635 2d3k:B (1.9) BS01 ZN 3.1.1.29 GO:0004045 ... O74017 18391411
    48636 2d3l:A (2.3) BS01 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48637 2d3l:A (2.3) BS02 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48638 2d3l:A (2.3) BS03 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48639 2d3l:A (2.3) BS04 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48640 2d3l:A (2.3) BS05 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48641 2d3l:A (2.3) BS06 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48642 2d3l:A (2.3) BS07 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48643 2d3l:A (2.3) BS08 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48644 2d3l:A (2.3) BS09 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48645 2d3l:A (2.3) BS10 CA 3.2.1.98 GO:0004553 ... P19571 16452622
    48646 2d3l:A (2.3) BS11 CA 3.2.1.98 GO:0004553 ... P19571 16452622
    48647 2d3l:A (2.3) BS12 CA 3.2.1.98 GO:0004553 ... P19571 16452622
    48648 2d3n:A (1.9) BS01 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48649 2d3n:A (1.9) BS02 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48650 2d3n:A (1.9) BS03 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48651 2d3n:A (1.9) BS04 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48652 2d3n:A (1.9) BS05 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48653 2d3n:A (1.9) BS06 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48654 2d3n:A (1.9) BS07 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48655 2d3n:A (1.9) BS08 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48656 2d3n:A (1.9) BS09 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48657 2d3n:A (1.9) BS10 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48658 2d3n:A (1.9) BS11 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48659 2d3n:A (1.9) BS12 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48660 2d3n:A (1.9) BS13 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48661 2d3n:A (1.9) BS14 GLC 3.2.1.98 GO:0004553 ... P19571 16452622
    48662 2d3n:A (1.9) BS15 CA 3.2.1.98 GO:0004553 ... P19571 16452622
    48663 2d3n:A (1.9) BS16 CA 3.2.1.98 GO:0004553 ... P19571 16452622
    48664 2d3n:A (1.9) BS17 CA 3.2.1.98 GO:0004553 ... P19571 16452622
    48665 2d3o:R (3.35) BS01 rna ? GO:0000027 ... Q9RXK0 16271892
    48666 2d3o:S (3.35) BS01 rna ? GO:0003723 ... Q9RXJ1 16271892
    48667 2d3o:W (3.35) BS01 rna ? GO:0003735 ... Q9RXJ4 16271892
    48668 2d3p:A (2.8) BS01 CA ? GO:0005537 ... P81517 17251039
    48669 2d3p:A (2.8) BS02 MN ? GO:0005537 ... P81517 17251039
    48670 2d3p:B (2.8) BS01 CA ? GO:0005537 ... P81517 17251039
    48671 2d3p:B (2.8) BS02 MN ? GO:0005537 ... P81517 17251039
    48672 2d3p:C (2.8) BS01 CA ? GO:0005537 ... P81517 17251039
    48673 2d3p:C (2.8) BS02 MN ? GO:0005537 ... P81517 17251039
    48674 2d3p:D (2.8) BS01 CA ? GO:0005537 ... P81517 17251039
    48675 2d3p:D (2.8) BS02 MN ? GO:0005537 ... P81517 17251039
    48676 2d3q:A (2.8) BS01 HEM 1.11.1.19 GO:0004601 ... Q8WZK8 21569205
    48677 2d3q:B (2.8) BS01 HEM 1.11.1.19 GO:0004601 ... Q8WZK8 21569205
    48678 2d3r:A (2.9) BS01 CA ? GO:0005537 ... P81517 17251039
    48679 2d3r:A (2.9) BS02 MN ? GO:0005537 ... P81517 17251039
    48680 2d3r:B (2.9) BS01 CA ? GO:0005537 ... P81517 17251039
    48681 2d3r:B (2.9) BS02 MN ? GO:0005537 ... P81517 17251039
    48682 2d3r:C (2.9) BS01 CA ? GO:0005537 ... P81517 17251039
    48683 2d3r:C (2.9) BS02 MN ? GO:0005537 ... P81517 17251039
    48684 2d3r:D (2.9) BS01 CA ? GO:0005537 ... P81517 17251039
    48685 2d3r:D (2.9) BS02 MN ? GO:0005537 ... P81517 17251039
    48686 2d3t:A (3.4) BS01 NAD 1.1.1.35
    4.2.1.17
    5.1.2.3
    5.3.3.8    		 GO:0003824 ... P28793 16472743
    48687 2d3t:B (3.4) BS01 NAD 1.1.1.35
    4.2.1.17
    5.1.2.3
    5.3.3.8    		 GO:0003824 ... P28793 16472743
    48688 2d3t:C (3.4) BS01 ACO 2.3.1.16 GO:0003988 ... P28790 16472743
    48689 2d3t:D (3.4) BS01 ACO 2.3.1.16 GO:0003988 ... P28790 16472743
    48690 2d43:A (2.8) BS01 AHR 3.2.1.55 GO:0005576 ... Q8NK89 16846393
    48691 2d43:A (2.8) BS02 AHR 3.2.1.55 GO:0005576 ... Q8NK89 16846393
    48692 2d44:A (2.3) BS01 XYS 3.2.1.55 GO:0005576 ... Q8NK89 16846393
    48693 2d44:A (2.3) BS02 AHR 3.2.1.55 GO:0005576 ... Q8NK89 16846393
    48694 2d44:A (2.3) BS03 XYS 3.2.1.55 GO:0005576 ... Q8NK89 16846393
    48695 2d44:A (2.3) BS04 AHR 3.2.1.55 GO:0005576 ... Q8NK89 16846393
    48696 2d45:A (3.8) BS01 dna ? GO:0003677 ... P68261 16582476
    48697 2d45:A (3.8) BS02 dna ? GO:0003677 ... P68261 16582476
    48698 2d45:B (3.8) BS01 dna ? GO:0003677 ... P68261 16582476
    48699 2d45:B (3.8) BS02 dna ? GO:0003677 ... P68261 16582476
    48700 2d45:C (3.8) BS01 dna ? GO:0003677 ... P68261 16582476
    48701 2d45:D (3.8) BS01 dna ? GO:0003677 ... P68261 16582476
    48702 2d45:D (3.8) BS02 dna ? GO:0003677 ... P68261 16582476
    48703 2d4c:A (2.4) BS01 CA 2.3.1.- GO:0005737 ... Q99962 16763557
    48704 2d4i:A (1.16) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 16552138
    48705 2d4i:A (1.16) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 16552138
    48706 2d4i:B (1.16) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 16552138
    48707 2d4i:B (1.16) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 16552138
    48708 2d4i:B (1.16) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 16552138
    48709 2d4i:B (1.16) BS04 NA 3.2.1.17 GO:0003796 ... P00698 16552138
    48710 2d4k:A (1.15) BS01 NA 3.2.1.17 GO:0003796 ... P00698 16552138
    48711 2d4k:A (1.15) BS02 CL 3.2.1.17 GO:0003796 ... P00698 16552138
    48712 2d4k:N (1.15) BS01 NA 3.2.1.17 GO:0003796 ... P00698 16552138
    48713 2d4k:N (1.15) BS02 CL 3.2.1.17 GO:0003796 ... P00698 16552138
    48714 2d4k:N (1.15) BS03 CL 3.2.1.17 GO:0003796 ... P00698 16552138
    48715 2d5c:A (1.65) BS01 SKM 1.1.1.25 GO:0004764 ... Q5SJF8 17825835
    48716 2d5c:B (1.65) BS01 SKM 1.1.1.25 GO:0004764 ... Q5SJF8 17825835
    48717 2d5i:A (2.2) BS01 FMN 1.6.5.-
    1.7.1.17    		 GO:0005829 ... P41407 16684776
    48718 2d5w:A (1.3) BS01 peptide ? GO:0015833 ... Q5SHU6 N/A
    48719 2d5w:B (1.3) BS01 peptide ? GO:0015833 ... Q5SHU6 N/A
    48720 2d5x:A (1.45) BS01 HEM ? GO:0004601 ... P01958 16403522
    48721 2d5x:A (1.45) BS02 L35 ? GO:0004601 ... P01958 16403522
    48722 2d5x:A (1.45) BS03 L35 ? GO:0004601 ... P01958 16403522
    48723 2d5x:B (1.45) BS01 HEM ? GO:0004601 ... P02062 16403522
    48724 2d5x:B (1.45) BS02 L35 ? GO:0004601 ... P02062 16403522
    48725 2d5y:A (1.98) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 N/A
    48726 2d5y:A (1.98) BS02 IVA 2.6.1.1 GO:0003824 ... P00509 N/A
    48727 2d5z:A (1.45) BS01 HEM ? GO:0004601 ... P69905 16403522
    48728 2d5z:A (1.45) BS02 L35 ? GO:0004601 ... P69905 16403522
    48729 2d5z:A (1.45) BS03 L35 ? GO:0004601 ... P69905 16403522
    48730 2d5z:B (1.45) BS01 HEM ? GO:0004601 ... P68871 16403522
    48731 2d5z:B (1.45) BS02 L35 ? GO:0004601 ... P68871 16403522
    48732 2d5z:C (1.45) BS01 L35 ? GO:0004601 ... P69905 16403522
    48733 2d5z:C (1.45) BS02 HEM ? GO:0004601 ... P69905 16403522
    48734 2d5z:C (1.45) BS03 L35 ? GO:0004601 ... P69905 16403522
    48735 2d5z:D (1.45) BS01 L35 ? GO:0004601 ... P68871 16403522
    48736 2d5z:D (1.45) BS02 HEM ? GO:0004601 ... P68871 16403522
    48737 2d5z:D (1.45) BS03 L35 ? GO:0004601 ... P68871 16403522
    48738 2d60:A (1.7) BS01 HEM ? GO:0004601 ... P69905 16403522
    48739 2d60:A (1.7) BS02 L35 ? GO:0004601 ... P69905 16403522
    48740 2d60:A (1.7) BS03 L35 ? GO:0004601 ... P69905 16403522
    48741 2d60:B (1.7) BS01 HEM ? GO:0004601 ... P68871 16403522
    48742 2d60:B (1.7) BS02 L35 ? GO:0004601 ... P68871 16403522
    48743 2d60:C (1.7) BS01 L35 ? GO:0004601 ... P69905 16403522
    48744 2d60:C (1.7) BS02 HEM ? GO:0004601 ... P69905 16403522
    48745 2d60:C (1.7) BS03 L35 ? GO:0004601 ... P69905 16403522
    48746 2d60:D (1.7) BS01 HEM ? GO:0004601 ... P68871 16403522
    48747 2d60:D (1.7) BS02 L35 ? GO:0004601 ... P68871 16403522
    48748 2d61:A (2.01) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 N/A
    48749 2d62:A (2.1) BS01 POP ? GO:0005524 ... O57933 N/A
    48750 2d63:A (2.05) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 N/A
    48751 2d63:A (2.05) BS02 IVA 2.6.1.1 GO:0003824 ... P00509 N/A
    48752 2d64:A (2.05) BS01 PLP 2.6.1.- GO:0003824 ... Q304P7 N/A
    48753 2d64:A (2.05) BS02 IVA 2.6.1.- GO:0003824 ... Q304P7 N/A
    48754 2d65:A (2.3) BS01 PLP 2.6.1.- GO:0003824 ... Q304P7 N/A
    48755 2d66:A (2.18) BS01 PLP 2.6.1.- GO:0003824 ... Q304P7 N/A
    48756 2d6b:A (1.25) BS01 202 3.2.1.17 GO:0003796 ... P00698 16929100
    48757 2d6b:A (1.25) BS02 202 3.2.1.17 GO:0003796 ... P00698 16929100
    48758 2d6b:A (1.25) BS03 202 3.2.1.17 GO:0003796 ... P00698 16929100
    48759 2d6b:A (1.25) BS04 202 3.2.1.17 GO:0003796 ... P00698 16929100
    48760 2d6b:A (1.25) BS05 202 3.2.1.17 GO:0003796 ... P00698 16929100
    48761 2d6b:A (1.25) BS06 202 3.2.1.17 GO:0003796 ... P00698 16929100
    48762 2d6b:A (1.25) BS07 202 3.2.1.17 GO:0003796 ... P00698 16929100
    48763 2d6c:A (2.26) BS01 HME 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 17173408
    48764 2d6c:A (2.26) BS02 IMD 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 17173408
    48765 2d6c:B (2.26) BS01 HME 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 17173408
    48766 2d6c:B (2.26) BS02 IMD 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 17173408
    48767 2d6f:C (3.15) BS01 rna 6.3.5.- GO:0003824 ... O26803 16809540
    48768 2d6f:C (3.15) BS02 ZN 6.3.5.- GO:0003824 ... O26803 16809540
    48769 2d6f:D (3.15) BS01 rna 6.3.5.- GO:0003824 ... O26803 16809540
    48770 2d6f:D (3.15) BS02 ZN 6.3.5.- GO:0003824 ... O26803 16809540
    48771 2d73:A (1.6) BS01 CA 3.2.1.3 GO:0000272 ... G8JZS4 18981178
    48772 2d73:B (1.6) BS01 CA 3.2.1.3 GO:0000272 ... G8JZS4 18981178
    48773 2d74:A (2.8) BS01 ZN 3.6.5.3 GO:0000049 ... Q8U082 16924118
    48774 2d7d:A (2.1) BS01 dna 3.1.-.- GO:0003677 ... P37954 16426634
    48775 2d7d:A (2.1) BS02 ADP 3.1.-.- GO:0003677 ... P37954 16426634
    48776 2d7i:A (2.5) BS01 MN 2.4.1.41 GO:0000139 ... Q86SR1 16650853
    48777 2d7i:A (2.5) BS02 UDP 2.4.1.41 GO:0000139 ... Q86SR1 16650853
    48778 2d7r:A (2.8) BS01 MN 2.4.1.41 GO:0000139 ... Q86SR1 16650853
    48779 2d7r:A (2.8) BS02 UDP 2.4.1.41 GO:0000139 ... Q86SR1 16650853
    48780 2d7y:A (2.66) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 N/A
    48781 2d7z:A (2.65) BS01 PLP 2.6.1.- GO:0003824 ... Q304P7 N/A
    48782 2d81:A (1.66) BS01 RB3 3.1.1.75 GO:0005576 ... B2NHN2 16405909
    48783 2d8a:A (2.05) BS01 ZN 1.1.1.103 GO:0005737 ... O58389 N/A
    48784 2d8a:A (2.05) BS02 ZN 1.1.1.103 GO:0005737 ... O58389 N/A
    48785 2d8a:A (2.05) BS03 NAD 1.1.1.103 GO:0005737 ... O58389 N/A
    48786 2d8l:A (1.7) BS01 GCD 3.2.1.172 GO:0003824 ... O34559 16781735
    48787 2d8w:A (2.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 16510975
    48788 2db4:A (2.4) BS01 DCW 3.6.3.14 GO:0005886 ... P43457 21813759
    48789 2db4:B (2.4) BS01 DCW 3.6.3.14 GO:0005886 ... P43457 21813759
    48790 2db4:C (2.4) BS01 DCW 3.6.3.14 GO:0005886 ... P43457 21813759
    48791 2db4:D (2.4) BS01 DCW 3.6.3.14 GO:0005886 ... P43457 21813759
    48792 2db4:E (2.4) BS01 DCW 3.6.3.14 GO:0005886 ... P43457 21813759
    48793 2db4:F (2.4) BS01 DCW 3.6.3.14 GO:0005886 ... P43457 21813759
    48794 2db4:G (2.4) BS01 DCW 3.6.3.14 GO:0005886 ... P43457 21813759
    48795 2db4:H (2.4) BS01 DCW 3.6.3.14 GO:0005886 ... P43457 21813759
    48796 2db4:I (2.4) BS01 DCW 3.6.3.14 GO:0005886 ... P43457 21813759
    48797 2db4:J (2.4) BS01 DCW 3.6.3.14 GO:0005886 ... P43457 21813759
    48798 2dbq:A (1.7) BS01 NAP 1.1.1.26 GO:0005737 ... O58320 17327673
    48799 2dbr:A (2.61) BS01 NAP 1.1.1.26 GO:0005737 ... O58320 17327673
    48800 2dbr:B (2.61) BS01 NAP 1.1.1.26 GO:0005737 ... O58320 17327673
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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