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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    48401 2d2c:N (3.8) BS03 HEC ? GO:0009055 ... P83791 16371475
    48402 2d2c:N (3.8) BS04 CLA ? GO:0009055 ... P83791 16371475
    48403 2d2c:O (3.8) BS01 peptide ? GO:0009055 ... P83792 16371475
    48404 2d2c:O (3.8) BS02 HEC ? GO:0009055 ... P83792 16371475
    48405 2d2c:O (3.8) BS03 BNT ? GO:0009055 ... P83792 16371475
    48406 2d2c:O (3.8) BS04 CLA ? GO:0009055 ... P83792 16371475
    48407 2d2c:P (3.8) BS01 peptide ? GO:0005506 ... P83793 16371475
    48408 2d2c:P (3.8) BS02 BNT ? GO:0005506 ... P83793 16371475
    48409 2d2c:P (3.8) BS03 HEM ? GO:0005506 ... P83793 16371475
    48410 2d2c:Q (3.8) BS01 FES 7.1.1.6 GO:0005886 ... P83794 16371475
    48411 2d2c:S (3.8) BS01 peptide ? GO:0009055 ... P83796 16371475
    48412 2d2c:S (3.8) BS02 peptide ? GO:0009055 ... P83796 16371475
    48413 2d2m:A (2.85) BS01 HEM ? GO:0001666 ... Q7M419 16204001
    48414 2d2m:A (2.85) BS02 HEM ? GO:0001666 ... Q7M419 16204001
    48415 2d2m:B (2.85) BS01 HEM ? GO:0005344 ... Q7M413 16204001
    48416 2d2m:B (2.85) BS02 OXY ? GO:0005344 ... Q7M413 16204001
    48417 2d2m:C (2.85) BS01 HEM ? GO:0001666 ... Q7M418 16204001
    48418 2d2m:C (2.85) BS02 OXY ? GO:0001666 ... Q7M418 16204001
    48419 2d2m:D (2.85) BS01 HEM ? GO:0005344 ... Q5KSB7 16204001
    48420 2d2n:A (3.2) BS01 HEM ? GO:0001666 ... Q7M419 16204001
    48421 2d2n:A (3.2) BS02 HEM ? GO:0001666 ... Q7M419 16204001
    48422 2d2n:B (3.2) BS01 HEM ? GO:0005344 ... Q7M413 16204001
    48423 2d2n:B (3.2) BS02 OXY ? GO:0005344 ... Q7M413 16204001
    48424 2d2n:C (3.2) BS01 HEM ? GO:0001666 ... Q7M418 16204001
    48425 2d2n:C (3.2) BS02 OXY ? GO:0001666 ... Q7M418 16204001
    48426 2d2n:D (3.2) BS01 HEM ? GO:0005344 ... Q5KSB7 16204001
    48427 2d30:A (2.4) BS01 ZN 3.5.4.5 GO:0003824 ... A0A6L7GZQ8 N/A
    48428 2d30:B (2.4) BS01 ZN 3.5.4.5 GO:0003824 ... A0A6L7GZQ8 N/A
    48429 2d32:A (2.4) BS01 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48430 2d32:A (2.4) BS02 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48431 2d32:A (2.4) BS03 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48432 2d32:A (2.4) BS04 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48433 2d32:A (2.4) BS05 GLU 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48434 2d32:A (2.4) BS06 CYS 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48435 2d32:A (2.4) BS07 ANP 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48436 2d32:B (2.4) BS01 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48437 2d32:B (2.4) BS02 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48438 2d32:B (2.4) BS03 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48439 2d32:B (2.4) BS04 GLU 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48440 2d32:B (2.4) BS05 CYS 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48441 2d32:B (2.4) BS06 ANP 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48442 2d32:C (2.4) BS01 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48443 2d32:C (2.4) BS02 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48444 2d32:C (2.4) BS03 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48445 2d32:C (2.4) BS04 GLU 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48446 2d32:C (2.4) BS05 CYS 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48447 2d32:C (2.4) BS06 ANP 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48448 2d32:D (2.4) BS01 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48449 2d32:D (2.4) BS02 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48450 2d32:D (2.4) BS03 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48451 2d32:D (2.4) BS04 GLU 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48452 2d32:D (2.4) BS05 CYS 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48453 2d32:D (2.4) BS06 ANP 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48454 2d33:A (2.6) BS01 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48455 2d33:A (2.6) BS02 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48456 2d33:A (2.6) BS03 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48457 2d33:A (2.6) BS04 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48458 2d33:A (2.6) BS05 GLU 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48459 2d33:A (2.6) BS06 CYS 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48460 2d33:A (2.6) BS07 ADP 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48461 2d33:A (2.6) BS08 AF3 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48462 2d33:B (2.6) BS01 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48463 2d33:B (2.6) BS02 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48464 2d33:B (2.6) BS03 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48465 2d33:B (2.6) BS04 GLU 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48466 2d33:B (2.6) BS05 CYS 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48467 2d33:B (2.6) BS06 ADP 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48468 2d33:B (2.6) BS07 AF3 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48469 2d33:C (2.6) BS01 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48470 2d33:C (2.6) BS02 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48471 2d33:C (2.6) BS03 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48472 2d33:C (2.6) BS04 GLU 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48473 2d33:C (2.6) BS05 CYS 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48474 2d33:C (2.6) BS06 ADP 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48475 2d33:C (2.6) BS07 AF3 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48476 2d33:D (2.6) BS01 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48477 2d33:D (2.6) BS02 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48478 2d33:D (2.6) BS03 MG 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48479 2d33:D (2.6) BS04 GLU 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48480 2d33:D (2.6) BS05 CYS 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48481 2d33:D (2.6) BS06 ADP 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48482 2d33:D (2.6) BS07 AF3 6.3.2.2 GO:0003824 ... P0A6W9 N/A
    48483 2d3a:A (2.63) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48484 2d3a:A (2.63) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48485 2d3a:A (2.63) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48486 2d3a:A (2.63) BS04 P3S 6.3.1.2 GO:0003824 ... P38561 16829528
    48487 2d3a:A (2.63) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    48488 2d3a:B (2.63) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48489 2d3a:B (2.63) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48490 2d3a:B (2.63) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48491 2d3a:B (2.63) BS04 P3S 6.3.1.2 GO:0003824 ... P38561 16829528
    48492 2d3a:B (2.63) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    48493 2d3a:C (2.63) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48494 2d3a:C (2.63) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48495 2d3a:C (2.63) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48496 2d3a:C (2.63) BS04 P3S 6.3.1.2 GO:0003824 ... P38561 16829528
    48497 2d3a:C (2.63) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    48498 2d3a:D (2.63) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48499 2d3a:D (2.63) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48500 2d3a:D (2.63) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48501 2d3a:D (2.63) BS04 P3S 6.3.1.2 GO:0003824 ... P38561 16829528
    48502 2d3a:D (2.63) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    48503 2d3a:E (2.63) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48504 2d3a:E (2.63) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48505 2d3a:E (2.63) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48506 2d3a:E (2.63) BS04 P3S 6.3.1.2 GO:0003824 ... P38561 16829528
    48507 2d3a:E (2.63) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    48508 2d3a:F (2.63) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48509 2d3a:F (2.63) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48510 2d3a:F (2.63) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48511 2d3a:F (2.63) BS04 P3S 6.3.1.2 GO:0003824 ... P38561 16829528
    48512 2d3a:F (2.63) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    48513 2d3a:G (2.63) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48514 2d3a:G (2.63) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48515 2d3a:G (2.63) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48516 2d3a:G (2.63) BS04 P3S 6.3.1.2 GO:0003824 ... P38561 16829528
    48517 2d3a:G (2.63) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    48518 2d3a:H (2.63) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48519 2d3a:H (2.63) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48520 2d3a:H (2.63) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48521 2d3a:H (2.63) BS04 P3S 6.3.1.2 GO:0003824 ... P38561 16829528
    48522 2d3a:H (2.63) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    48523 2d3a:I (2.63) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48524 2d3a:I (2.63) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48525 2d3a:I (2.63) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48526 2d3a:I (2.63) BS04 P3S 6.3.1.2 GO:0003824 ... P38561 16829528
    48527 2d3a:I (2.63) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    48528 2d3a:J (2.63) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48529 2d3a:J (2.63) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48530 2d3a:J (2.63) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48531 2d3a:J (2.63) BS04 P3S 6.3.1.2 GO:0003824 ... P38561 16829528
    48532 2d3a:J (2.63) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    48533 2d3b:A (3.5) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48534 2d3b:A (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48535 2d3b:A (3.5) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48536 2d3b:A (3.5) BS04 ANP 6.3.1.2 GO:0003824 ... P38561 16829528
    48537 2d3b:A (3.5) BS05 MSL 6.3.1.2 GO:0003824 ... P38561 16829528
    48538 2d3b:B (3.5) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48539 2d3b:B (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48540 2d3b:B (3.5) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48541 2d3b:B (3.5) BS04 ANP 6.3.1.2 GO:0003824 ... P38561 16829528
    48542 2d3b:B (3.5) BS05 MSL 6.3.1.2 GO:0003824 ... P38561 16829528
    48543 2d3b:C (3.5) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48544 2d3b:C (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48545 2d3b:C (3.5) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48546 2d3b:C (3.5) BS04 MSL 6.3.1.2 GO:0003824 ... P38561 16829528
    48547 2d3b:C (3.5) BS05 ANP 6.3.1.2 GO:0003824 ... P38561 16829528
    48548 2d3b:D (3.5) BS01 MSL 6.3.1.2 GO:0003824 ... P38561 16829528
    48549 2d3b:D (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48550 2d3b:D (3.5) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48551 2d3b:D (3.5) BS04 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48552 2d3b:D (3.5) BS05 ANP 6.3.1.2 GO:0003824 ... P38561 16829528
    48553 2d3b:E (3.5) BS01 MSL 6.3.1.2 GO:0003824 ... P38561 16829528
    48554 2d3b:E (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48555 2d3b:E (3.5) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48556 2d3b:E (3.5) BS04 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48557 2d3b:E (3.5) BS05 ANP 6.3.1.2 GO:0003824 ... P38561 16829528
    48558 2d3b:F (3.5) BS01 MSL 6.3.1.2 GO:0003824 ... P38561 16829528
    48559 2d3b:F (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48560 2d3b:F (3.5) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48561 2d3b:F (3.5) BS04 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48562 2d3b:F (3.5) BS05 ANP 6.3.1.2 GO:0003824 ... P38561 16829528
    48563 2d3b:G (3.5) BS01 MSL 6.3.1.2 GO:0003824 ... P38561 16829528
    48564 2d3b:G (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48565 2d3b:G (3.5) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48566 2d3b:G (3.5) BS04 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48567 2d3b:G (3.5) BS05 ANP 6.3.1.2 GO:0003824 ... P38561 16829528
    48568 2d3b:H (3.5) BS01 MSL 6.3.1.2 GO:0003824 ... P38561 16829528
    48569 2d3b:H (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48570 2d3b:H (3.5) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48571 2d3b:H (3.5) BS04 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48572 2d3b:H (3.5) BS05 ANP 6.3.1.2 GO:0003824 ... P38561 16829528
    48573 2d3b:I (3.5) BS01 MSL 6.3.1.2 GO:0003824 ... P38561 16829528
    48574 2d3b:I (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48575 2d3b:I (3.5) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48576 2d3b:I (3.5) BS04 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48577 2d3b:I (3.5) BS05 ANP 6.3.1.2 GO:0003824 ... P38561 16829528
    48578 2d3b:J (3.5) BS01 MSL 6.3.1.2 GO:0003824 ... P38561 16829528
    48579 2d3b:J (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48580 2d3b:J (3.5) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48581 2d3b:J (3.5) BS04 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48582 2d3b:J (3.5) BS05 ANP 6.3.1.2 GO:0003824 ... P38561 16829528
    48583 2d3c:A (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48584 2d3c:A (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48585 2d3c:A (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48586 2d3c:A (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    48587 2d3c:A (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    48588 2d3c:B (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48589 2d3c:B (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48590 2d3c:B (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48591 2d3c:B (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    48592 2d3c:B (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    48593 2d3c:C (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48594 2d3c:C (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48595 2d3c:C (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48596 2d3c:C (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    48597 2d3c:C (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    48598 2d3c:D (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48599 2d3c:D (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48600 2d3c:D (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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