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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    46201 2bn2:A (2.8) BS01 PHE ? GO:0005185 ... P01180 2034668
    46202 2bn2:A (2.8) BS02 TYR ? GO:0005185 ... P01180 2034668
    46203 2bn2:C (2.8) BS01 PHE ? GO:0005185 ... P01180 2034668
    46204 2bn2:C (2.8) BS02 TYR ? GO:0005185 ... P01180 2034668
    46205 2bn2:E (2.8) BS01 PHE ? GO:0005185 ... P01180 2034668
    46206 2bn2:E (2.8) BS02 TYR ? GO:0005185 ... P01180 2034668
    46207 2bn2:G (2.8) BS01 PHE ? GO:0005185 ... P01180 2034668
    46208 2bn2:G (2.8) BS02 TYR ? GO:0005185 ... P01180 2034668
    46209 2bn3:B (1.4) BS01 peptide ? GO:0005179 ... P01317 16131756
    46210 2bn4:A (2.91) BS01 FAD 1.6.2.4 GO:0003958 ... P16603 16407065
    46211 2bn4:A (2.91) BS02 FMN 1.6.2.4 GO:0003958 ... P16603 16407065
    46212 2bn4:A (2.91) BS03 NAP 1.6.2.4 GO:0003958 ... P16603 16407065
    46213 2bn4:B (2.91) BS01 FAD 1.6.2.4 GO:0003958 ... P16603 16407065
    46214 2bn4:B (2.91) BS02 FMN 1.6.2.4 GO:0003958 ... P16603 16407065
    46215 2bn4:B (2.91) BS03 NAP 1.6.2.4 GO:0003958 ... P16603 16407065
    46216 2bn7:A (2.4) BS01 PRO 3.4.11.9 GO:0004177 ... P15034 16229471
    46217 2bn7:A (2.4) BS02 LEU 3.4.11.9 GO:0004177 ... P15034 16229471
    46218 2bn7:A (2.4) BS03 MN 3.4.11.9 GO:0004177 ... P15034 16229471
    46219 2bn7:A (2.4) BS04 MN 3.4.11.9 GO:0004177 ... P15034 16229471
    46220 2bn7:A (2.4) BS05 ZN 3.4.11.9 GO:0004177 ... P15034 16229471
    46221 2bnd:A (2.6) BS01 UDP 2.7.4.22 GO:0005524 ... P0A7E9 15857829
    46222 2bnd:B (2.6) BS01 UDP 2.7.4.22 GO:0005524 ... P0A7E9 15857829
    46223 2bne:A (2.3) BS01 U5P 2.7.4.22 GO:0005524 ... P0A7E9 15857829
    46224 2bne:B (2.3) BS01 U5P 2.7.4.22 GO:0005524 ... P0A7E9 15857829
    46225 2bnf:A (2.45) BS01 UTP 2.7.4.22 GO:0005524 ... P0A7E9 15857829 MOAD: ic50=65uM
    46226 2bnf:B (2.45) BS01 UTP 2.7.4.22 GO:0005524 ... P0A7E9 15857829 MOAD: ic50=65uM
    46227 2bng:B (2.5) BS01 CA 3.3.2.10
    3.3.2.11
    GO:0004301 ... O33283 16051262
    46228 2bnp:A (2.7) BS01 BCL ? GO:0009772 ... P0C0Y8 15937492
    46229 2bnp:A (2.7) BS02 BCL ? GO:0009772 ... P0C0Y8 15937492
    46230 2bnp:A (2.7) BS03 BPH ? GO:0009772 ... P0C0Y8 15937492
    46231 2bnp:A (2.7) BS04 MST ? GO:0009772 ... P0C0Y8 15937492
    46232 2bnp:A (2.7) BS05 BCL ? GO:0009772 ... P0C0Y8 15937492
    46233 2bnp:A (2.7) BS06 BPH ? GO:0009772 ... P0C0Y8 15937492
    46234 2bnp:A (2.7) BS07 FE2 ? GO:0009772 ... P0C0Y8 15937492
    46235 2bnp:B (2.7) BS01 BCL ? GO:0009772 ... P0C0Y9 15937492
    46236 2bnp:B (2.7) BS02 BPH ? GO:0009772 ... P0C0Y9 15937492
    46237 2bnp:B (2.7) BS03 BCL ? GO:0009772 ... P0C0Y9 15937492
    46238 2bnp:B (2.7) BS04 BCL ? GO:0009772 ... P0C0Y9 15937492
    46239 2bnp:B (2.7) BS05 BPH ? GO:0009772 ... P0C0Y9 15937492
    46240 2bnp:B (2.7) BS06 FE2 ? GO:0009772 ... P0C0Y9 15937492
    46241 2bnp:B (2.7) BS07 U10 ? GO:0009772 ... P0C0Y9 15937492
    46242 2bnq:D (1.7) BS01 peptide ? GO:0002250 ... A0A0B4J279
    P01848
    15837811
    46243 2bnq:E (1.7) BS01 peptide ? GO:0002250 ... A0A0K0K1A5
    P01850
    15837811
    46244 2bnr:D (1.9) BS01 peptide ? GO:0002250 ... A0A0B4J279
    P01848
    15837811
    46245 2bnr:E (1.9) BS01 peptide ? GO:0002250 ... A0A0K0K1A5
    P01850
    15837811
    46246 2bns:A (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 15937492
    46247 2bns:A (2.5) BS02 BCL ? GO:0009772 ... P0C0Y8 15937492
    46248 2bns:A (2.5) BS03 BPH ? GO:0009772 ... P0C0Y8 15937492
    46249 2bns:A (2.5) BS04 MST ? GO:0009772 ... P0C0Y8 15937492
    46250 2bns:A (2.5) BS05 BCL ? GO:0009772 ... P0C0Y8 15937492
    46251 2bns:A (2.5) BS06 BPH ? GO:0009772 ... P0C0Y8 15937492
    46252 2bns:A (2.5) BS07 FE2 ? GO:0009772 ... P0C0Y8 15937492
    46253 2bns:B (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 15937492
    46254 2bns:B (2.5) BS02 BPH ? GO:0009772 ... P0C0Y9 15937492
    46255 2bns:B (2.5) BS03 BCL ? GO:0009772 ... P0C0Y9 15937492
    46256 2bns:B (2.5) BS04 BCL ? GO:0009772 ... P0C0Y9 15937492
    46257 2bns:B (2.5) BS05 BPH ? GO:0009772 ... P0C0Y9 15937492
    46258 2bns:B (2.5) BS06 FE2 ? GO:0009772 ... P0C0Y9 15937492
    46259 2bns:B (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 15937492
    46260 2bny:A (3.0) BS01 rna ? GO:0003723 ... P03612 16531233
    46261 2bny:B (3.0) BS01 rna ? GO:0003723 ... P03612 16531233
    46262 2bny:C (3.0) BS01 rna ? GO:0003723 ... P03612 16531233
    46263 2bo0:A (1.35) BS01 ZN 1.7.2.1 GO:0005507 ... O68601 15927201
    46264 2bo0:A (1.35) BS02 ZN 1.7.2.1 GO:0005507 ... O68601 15927201
    46265 2bo2:A (2.6) BS01 CA ? GO:0004930 ... Q9UHX3 17449467
    46266 2bo2:A (2.6) BS02 CA ? GO:0004930 ... Q9UHX3 17449467
    46267 2bo2:B (2.6) BS01 CA ? GO:0004930 ... Q9UHX3 17449467
    46268 2bo2:B (2.6) BS02 CA ? GO:0004930 ... Q9UHX3 17449467
    46269 2boa:A (2.2) BS01 ZN 3.4.17.- GO:0004180 ... Q9UI42 16091843
    46270 2boa:B (2.2) BS01 ZN 3.4.17.- GO:0004180 ... Q9UI42 16091843
    46271 2bob:C (2.76) BS01 TBA ? GO:0005249 ... P0A334 15852022
    46272 2bon:A (1.9) BS01 MG 2.7.1.- GO:0000287 ... P76407 17351295
    46273 2bon:B (1.9) BS01 MG 2.7.1.- GO:0000287 ... P76407 17351295
    46274 2bop:A (1.7) BS01 dna ? GO:0003677 ... P03122 1328886
    46275 2boq:A (1.33) BS01 HEM 1.11.1.16 GO:0000302 ... O94753 16246366
    46276 2boq:A (1.33) BS02 ZN 1.11.1.16 GO:0000302 ... O94753 16246366
    46277 2boq:A (1.33) BS03 ZN 1.11.1.16 GO:0000302 ... O94753 16246366
    46278 2boq:A (1.33) BS04 MN 1.11.1.16 GO:0000302 ... O94753 16246366
    46279 2boq:A (1.33) BS05 CA 1.11.1.16 GO:0000302 ... O94753 16246366
    46280 2boq:A (1.33) BS06 CA 1.11.1.16 GO:0000302 ... O94753 16246366
    46281 2bos:A (2.0) BS01 GAL ? GO:0005576 ... Q47644 10745005
    46282 2bos:A (2.0) BS02 GLA ? GO:0005576 ... Q47644 10745005
    46283 2bos:A (2.0) BS03 GAL ? GO:0005576 ... Q47644 10745005
    46284 2bos:A (2.0) BS04 GLA ? GO:0005576 ... Q47644 10745005
    46285 2bos:B (2.0) BS01 GAL ? GO:0005576 ... Q47644 10745005
    46286 2bos:B (2.0) BS02 GLA ? GO:0005576 ... Q47644 10745005
    46287 2bos:B (2.0) BS03 GAL ? GO:0005576 ... Q47644 10745005
    46288 2bos:B (2.0) BS04 GLA ? GO:0005576 ... Q47644 10745005
    46289 2bos:C (2.0) BS01 GAL ? GO:0005576 ... Q47644 10745005
    46290 2bos:C (2.0) BS02 GLA ? GO:0005576 ... Q47644 10745005
    46291 2bos:E (2.0) BS01 GAL ? GO:0005576 ... Q47644 10745005
    46292 2bos:E (2.0) BS02 GLA ? GO:0005576 ... Q47644 10745005
    46293 2bos:E (2.0) BS03 GAL ? GO:0005576 ... Q47644 10745005
    46294 2bos:E (2.0) BS04 GLA ? GO:0005576 ... Q47644 10745005
    46295 2bou:A (1.9) BS01 CA ? GO:0004930 ... P48960
    Q9UHX3
    17449467
    46296 2bou:A (1.9) BS02 CA ? GO:0004930 ... P48960
    Q9UHX3
    17449467
    46297 2bov:A (2.66) BS01 GDP 3.6.5.2 GO:0001843 ... P11233 15809419
    46298 2boz:L (2.4) BS01 BCL ? GO:0009772 ... P0C0Y8 15908429
    46299 2boz:L (2.4) BS02 BCL ? GO:0009772 ... P0C0Y8 15908429
    46300 2boz:L (2.4) BS03 BPH ? GO:0009772 ... P0C0Y8 15908429
    46301 2boz:L (2.4) BS04 U10 ? GO:0009772 ... P0C0Y8 15908429
    46302 2boz:L (2.4) BS05 BCL ? GO:0009772 ... P0C0Y8 15908429
    46303 2boz:L (2.4) BS06 FE ? GO:0009772 ... P0C0Y8 15908429
    46304 2boz:L (2.4) BS07 BPH ? GO:0009772 ... P0C0Y8 15908429
    46305 2boz:L (2.4) BS08 U10 ? GO:0009772 ... P0C0Y8 15908429
    46306 2boz:M (2.4) BS01 BCL ? GO:0009772 ... P0C0Y9 15908429
    46307 2boz:M (2.4) BS02 BPH ? GO:0009772 ... P0C0Y9 15908429
    46308 2boz:M (2.4) BS03 BCL ? GO:0009772 ... P0C0Y9 15908429
    46309 2boz:M (2.4) BS04 BCL ? GO:0009772 ... P0C0Y9 15908429
    46310 2boz:M (2.4) BS05 FE ? GO:0009772 ... P0C0Y9 15908429
    46311 2boz:M (2.4) BS06 BPH ? GO:0009772 ... P0C0Y9 15908429
    46312 2boz:M (2.4) BS07 SPN ? GO:0009772 ... P0C0Y9 15908429
    46313 2boz:M (2.4) BS08 U10 ? GO:0009772 ... P0C0Y9 15908429
    46314 2bp0:A (1.9) BS01 CU 1.7.2.1 GO:0005507 ... O68601 15927201
    46315 2bp0:A (1.9) BS02 CU 1.7.2.1 GO:0005507 ... O68601 15927201
    46316 2bp0:A (1.9) BS03 ZN 1.7.2.1 GO:0005507 ... O68601 15927201
    46317 2bp0:A (1.9) BS04 ZN 1.7.2.1 GO:0005507 ... O68601 15927201
    46318 2bp0:A (1.9) BS05 ZN 1.7.2.1 GO:0005507 ... O68601 15927201
    46319 2bp0:A (1.9) BS06 ZN 1.7.2.1 GO:0005507 ... O68601 15927201
    46320 2bp0:B (1.9) BS01 CU 1.7.2.1 GO:0005507 ... O68601 15927201
    46321 2bp0:B (1.9) BS02 CU 1.7.2.1 GO:0005507 ... O68601 15927201
    46322 2bp0:B (1.9) BS03 ZN 1.7.2.1 GO:0005507 ... O68601 15927201
    46323 2bp0:B (1.9) BS04 ZN 1.7.2.1 GO:0005507 ... O68601 15927201
    46324 2bp1:A (2.4) BS01 NDP 1.1.1.n11 GO:0004032 ... O43488 N/A
    46325 2bp1:B (2.4) BS01 NDP 1.1.1.n11 GO:0004032 ... O43488 N/A
    46326 2bp1:C (2.4) BS01 NDP 1.1.1.n11 GO:0004032 ... O43488 N/A
    46327 2bp1:D (2.4) BS01 NDP 1.1.1.n11 GO:0004032 ... O43488 N/A
    46328 2bp5:M (2.8) BS01 peptide ? GO:0002092 ... P84092 15985462
    46329 2bp8:A (1.9) BS01 CU 1.7.2.1 GO:0005507 ... O68601 15927201
    46330 2bp8:A (1.9) BS02 CU 1.7.2.1 GO:0005507 ... O68601 15927201
    46331 2bp8:A (1.9) BS03 ZN 1.7.2.1 GO:0005507 ... O68601 15927201
    46332 2bp8:A (1.9) BS04 ZN 1.7.2.1 GO:0005507 ... O68601 15927201
    46333 2bp8:B (1.9) BS01 CU 1.7.2.1 GO:0005507 ... O68601 15927201
    46334 2bp8:B (1.9) BS02 CU 1.7.2.1 GO:0005507 ... O68601 15927201
    46335 2bp8:B (1.9) BS03 ZN 1.7.2.1 GO:0005507 ... O68601 15927201
    46336 2bp8:B (1.9) BS04 ZN 1.7.2.1 GO:0005507 ... O68601 15927201
    46337 2bpa:1 (3.0) BS01 dna ? GO:0005198 ... P03641 1370343
    46338 2bpa:3 (3.0) BS01 dna ? GO:0003677 ... P69592 1370343
    46339 2bpf:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06766 7516580
    46340 2bpf:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06766 7516580
    46341 2bpf:A (2.9) BS03 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06766 7516580
    46342 2bpf:A (2.9) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06766 7516580
    46343 2bpf:A (2.9) BS05 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06766 7516580
    46344 2bpg:A (3.6) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06766 7516580
    46345 2bpg:A (3.6) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06766 7516580
    46346 2bpg:A (3.6) BS03 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06766 7516580
    46347 2bpg:A (3.6) BS04 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06766 7516580
    46348 2bpg:B (3.6) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06766 7516580
    46349 2bpg:B (3.6) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06766 7516580
    46350 2bpg:B (3.6) BS03 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06766 7516580
    46351 2bpi:A (2.52) BS01 FE 1.15.1.1 GO:0004784 ... Q8IAY6 17020617
    46352 2bpi:B (2.52) BS01 FE 1.15.1.1 GO:0004784 ... Q8IAY6 17020617
    46353 2bpm:A (2.4) BS01 529 2.7.11.22 GO:0000082 ... P24941 15828833 MOAD: ic50=2nM
    PDBbind: -logKd/Ki=8.70, IC50=2nM
    46354 2bpm:C (2.4) BS01 529 2.7.11.22 GO:0000082 ... P24941 15828833 MOAD: ic50=2nM
    46355 2bpn:A (-1.00) BS01 HEC ? GO:0009055 ... P00131 16527248
    46356 2bpn:A (-1.00) BS02 HEC ? GO:0009055 ... P00131 16527248
    46357 2bpn:A (-1.00) BS03 HEC ? GO:0009055 ... P00131 16527248
    46358 2bpn:A (-1.00) BS04 HEC ? GO:0009055 ... P00131 16527248
    46359 2bpo:A (2.9) BS01 FAD 1.6.2.4 GO:0003958 ... P16603 N/A
    46360 2bpo:A (2.9) BS02 FMN 1.6.2.4 GO:0003958 ... P16603 N/A
    46361 2bpo:A (2.9) BS03 NAP 1.6.2.4 GO:0003958 ... P16603 N/A
    46362 2bpo:B (2.9) BS01 FAD 1.6.2.4 GO:0003958 ... P16603 N/A
    46363 2bpo:B (2.9) BS02 FMN 1.6.2.4 GO:0003958 ... P16603 N/A
    46364 2bpo:B (2.9) BS03 NAP 1.6.2.4 GO:0003958 ... P16603 N/A
    46365 2bpp:A (1.8) BS01 CA 3.1.1.4 GO:0002227 ... P00593 1751497
    46366 2bpq:A (1.9) BS01 BEN 2.4.2.18 GO:0000162 ... P9WFX5 16337227
    46367 2bpq:B (1.9) BS01 BEN 2.4.2.18 GO:0000162 ... P9WFX5 16337227
    46368 2bpq:B (1.9) BS02 BEN 2.4.2.18 GO:0000162 ... P9WFX5 16337227
    46369 2bq1:E (3.99) BS01 DGT 1.17.4.1 GO:0004748 ... Q08698 16631785
    46370 2bq1:E (3.99) BS02 DGT 1.17.4.1 GO:0004748 ... Q08698 16631785
    46371 2bq1:F (3.99) BS01 DGT 1.17.4.1 GO:0004748 ... Q08698 16631785
    46372 2bq1:I (3.99) BS01 FE 1.17.4.1 GO:0004748 ... P17424 16631785
    46373 2bq1:I (3.99) BS02 FE 1.17.4.1 GO:0004748 ... P17424 16631785
    46374 2bq1:J (3.99) BS01 FE 1.17.4.1 GO:0004748 ... P17424 16631785
    46375 2bq1:J (3.99) BS02 FE 1.17.4.1 GO:0004748 ... P17424 16631785
    46376 2bq3:A (2.0) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15965231
    46377 2bq3:A (2.0) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15965231
    46378 2bq3:A (2.0) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15965231
    46379 2bq3:A (2.0) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 15965231
    46380 2bq3:A (2.0) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 15965231
    46381 2bq4:A (1.68) BS01 HEC ? GO:0009055 ... P94691 16226767
    46382 2bq4:A (1.68) BS02 HEC ? GO:0009055 ... P94691 16226767
    46383 2bq4:A (1.68) BS03 HEC ? GO:0009055 ... P94691 16226767
    46384 2bq4:A (1.68) BS04 HEC ? GO:0009055 ... P94691 16226767
    46385 2bq4:A (1.68) BS05 CA ? GO:0009055 ... P94691 16226767
    46386 2bq4:B (1.68) BS01 HEC ? GO:0009055 ... P94691 16226767
    46387 2bq4:B (1.68) BS02 HEC ? GO:0009055 ... P94691 16226767
    46388 2bq4:B (1.68) BS03 HEC ? GO:0009055 ... P94691 16226767
    46389 2bq4:B (1.68) BS04 HEC ? GO:0009055 ... P94691 16226767
    46390 2bq4:B (1.68) BS05 CA ? GO:0009055 ... P94691 16226767
    46391 2bq5:A (2.91) BS01 rna ? GO:0003723 ... P03612 16531233
    46392 2bq5:B (2.91) BS01 rna ? GO:0003723 ... P03612 16531233
    46393 2bq5:C (2.91) BS01 rna ? GO:0003723 ... P03612 16531233
    46394 2bq8:X (2.2) BS01 FE2 3.1.3.2 GO:0003993 ... P13686 15993892
    46395 2bq8:X (2.2) BS02 FE2 3.1.3.2 GO:0003993 ... P13686 15993892
    46396 2bq8:X (2.2) BS03 ZN 3.1.3.2 GO:0003993 ... P13686 15993892
    46397 2bqr:A (2.37) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15965231
    46398 2bqr:A (2.37) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15965231
    46399 2bqr:A (2.37) BS03 DTP 2.7.7.7 GO:0000287 ... Q97W02 15965231
    46400 2bqr:A (2.37) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 15965231

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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