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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    45601 2b9j:A (2.3) BS02 MG 2.7.11.24 GO:0000749 ... P16892 16364919
    45602 2b9j:A (2.3) BS03 ADP 2.7.11.24 GO:0000749 ... P16892 16364919
    45603 2b9l:A (2.0) BS01 CA ? GO:0004252 ... Q9GRW0 16362048
    45604 2b9s:A (2.27) BS01 dna 5.6.2.1 GO:0003677 ... Q9GPZ9 16487540
    45605 2b9s:A (2.27) BS02 dna 5.6.2.1 GO:0003677 ... Q9GPZ9 16487540
    45606 2b9s:A (2.27) BS03 dna 5.6.2.1 GO:0003677 ... Q9GPZ9 16487540
    45607 2b9s:A (2.27) BS04 VO4 5.6.2.1 GO:0003677 ... Q9GPZ9 16487540
    45608 2b9s:B (2.27) BS01 dna 5.99.1.2 GO:0003677 ... Q8WQM6 16487540
    45609 2b9s:B (2.27) BS02 dna 5.99.1.2 GO:0003677 ... Q8WQM6 16487540
    45610 2ba1:A (2.7) BS01 ZN ? GO:0000178 ... O30033 16285927
    45611 2ba1:B (2.7) BS01 ZN ? GO:0000178 ... O30033 16285927
    45612 2ba1:C (2.7) BS01 ZN ? GO:0000178 ... O30033 16285927
    45613 2bag:A (2.4) BS01 GSG 3.1.1.7 GO:0001507 ... P04058 16913695
    45614 2baj:A (2.25) BS01 1PP 2.7.11.24 GO:0000077 ... Q16539 16342939 MOAD: Kd=4nM
    PDBbind: -logKd/Ki=8.40, Kd=4.0nM
    BindingDB: IC50=30nM
    45615 2bak:A (2.2) BS01 AQZ 2.7.11.24 GO:0000077 ... Q16539 16342939 MOAD: Kd=37nM
    PDBbind: -logKd/Ki=7.43, Kd=37nM
    BindingDB: IC50=39nM
    45616 2bal:A (2.1) BS01 PQA 2.7.11.24 GO:0000077 ... Q16539 16342939 MOAD: Kd=490nM
    PDBbind: -logKd/Ki=6.31, Kd=490nM
    45617 2baq:A (2.8) BS01 PQB 2.7.11.24 GO:0000077 ... Q16539 16342939 BindingDB: IC50=400nM
    45618 2bat:A (2.0) BS01 SIA 3.2.1.18 GO:0004308 ... P06820 1438172
    45619 2bat:A (2.0) BS02 CA 3.2.1.18 GO:0004308 ... P06820 1438172
    45620 2baw:A (2.3) BS01 B7G ? GO:0003677 ... Q03181 16387648
    45621 2baw:A (2.3) BS02 B7G ? GO:0003677 ... Q03181 16387648
    45622 2baw:A (2.3) BS03 VCA ? GO:0003677 ... Q03181 16387648
    45623 2baw:B (2.3) BS01 B7G ? GO:0003677 ... Q03181 16387648
    45624 2baw:B (2.3) BS02 B7G ? GO:0003677 ... Q03181 16387648
    45625 2baw:B (2.3) BS03 VCA ? GO:0003677 ... Q03181 16387648
    45626 2bax:A (1.1) BS01 CA 3.1.1.4 GO:0002227 ... P00593 16508077
    45627 2bax:A (1.1) BS02 CL 3.1.1.4 GO:0002227 ... P00593 16508077
    45628 2bb0:A (2.0) BS01 ACT 3.5.2.7 GO:0005506 ... P42084 16990261
    45629 2bb0:A (2.0) BS02 ZN 3.5.2.7 GO:0005506 ... P42084 16990261
    45630 2bb0:B (2.0) BS01 ACT 3.5.2.7 GO:0005506 ... P42084 16990261
    45631 2bb0:B (2.0) BS02 ZN 3.5.2.7 GO:0005506 ... P42084 16990261
    45632 2bb4:A (1.6) BS01 peptide 3.4.21.36 GO:0004252 ... P00772 16754679
    45633 2bb4:A (1.6) BS02 ASP 3.4.21.36 GO:0004252 ... P00772 16754679
    45634 2bb4:A (1.6) BS03 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    45635 2bb4:A (1.6) BS04 PHE 3.4.21.36 GO:0004252 ... P00772 16754679
    45636 2bb5:A (3.2) BS01 B12 ? GO:0005515 ... P20062 16537422
    45637 2bb5:B (3.2) BS01 B12 ? GO:0005515 ... P20062 16537422
    45638 2bb6:A (2.0) BS01 B12 ? GO:0005576 ... Q9XSC9 16537422
    45639 2bb6:B (2.0) BS01 B12 ? GO:0005576 ... Q9XSC9 16537422
    45640 2bb6:C (2.0) BS01 B12 ? GO:0005576 ... Q9XSC9 16537422
    45641 2bb6:D (2.0) BS01 B12 ? GO:0005576 ... Q9XSC9 16537422
    45642 2bb7:A (1.7) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16300729
    45643 2bb7:A (1.7) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 16300729
    45644 2bb7:A (1.7) BS03 QMS 3.4.11.18 GO:0004177 ... P0AE18 16300729 MOAD: ic50=2.14uM
    PDBbind: -logKd/Ki=5.67, IC50=2.14uM
    45645 2bbc:A (2.4) BS01 B12 ? GO:0005576 ... Q9XSC9 16537422
    45646 2bbf:A (1.7) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 17524419
    45647 2bbf:A (1.7) BS02 344 2.4.2.29 GO:0002099 ... P28720 17524419 MOAD: Ki=7.9uM
    45648 2bbh:A (1.85) BS01 DMU ? GO:0016020 ... Q9WZ31 16598263
    45649 2bbh:A (1.85) BS02 DMU ? GO:0016020 ... Q9WZ31 16598263
    45650 2bbh:A (1.85) BS03 DMU ? GO:0016020 ... Q9WZ31 16598263
    45651 2bbh:A (1.85) BS04 DMU ? GO:0016020 ... Q9WZ31 16598263
    45652 2bbm:A (-1.00) BS01 peptide ? GO:0005509 ... P62152 1585175
    45653 2bbm:A (-1.00) BS02 CA ? GO:0005509 ... P62152 1585175
    45654 2bbm:A (-1.00) BS03 CA ? GO:0005509 ... P62152 1585175
    45655 2bbm:A (-1.00) BS04 CA ? GO:0005509 ... P62152 1585175
    45656 2bbm:A (-1.00) BS05 CA ? GO:0005509 ... P62152 1585175
    45657 2bbn:A (-1.00) BS01 peptide ? GO:0005509 ... P62152 1585175
    45658 2bbn:A (-1.00) BS02 CA ? GO:0005509 ... P62152 1585175
    45659 2bbn:A (-1.00) BS03 CA ? GO:0005509 ... P62152 1585175
    45660 2bbn:A (-1.00) BS04 CA ? GO:0005509 ... P62152 1585175
    45661 2bbn:A (-1.00) BS05 CA ? GO:0005509 ... P62152 1585175
    45662 2bbq:A (2.3) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 1390771
    45663 2bbq:A (2.3) BS02 PFG 2.1.1.45 GO:0000287 ... P0A884 1390771
    45664 2bbq:A (2.3) BS03 UMP 2.1.1.45 GO:0000287 ... P0A884 1390771
    45665 2bbq:B (2.3) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 1390771
    45666 2bbq:B (2.3) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 1390771
    45667 2bbq:B (2.3) BS03 PFG 2.1.1.45 GO:0000287 ... P0A884 1390771
    45668 2bbw:A (2.05) BS01 GP5 2.7.4.10
    2.7.4.6
    GO:0002082 ... P27144 N/A
    45669 2bbw:B (2.05) BS01 GP5 2.7.4.10
    2.7.4.6
    GO:0002082 ... P27144 N/A
    45670 2bc2:A (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 N/A
    45671 2bc2:B (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 N/A
    45672 2bc5:A (2.25) BS01 HEC ? GO:0005506 ... P0ABE7 16939202
    45673 2bc5:B (2.25) BS01 HEC ? GO:0005506 ... P0ABE7 16939202
    45674 2bc5:C (2.25) BS01 HEC ? GO:0005506 ... P0ABE7 16939202
    45675 2bc5:D (2.25) BS01 HEC ? GO:0005506 ... P0ABE7 16939202
    45676 2bcc:C (3.5) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    45677 2bcc:C (3.5) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    45678 2bcc:C (3.5) BS03 U10 1.10.2.2 GO:0005737 ... P18946 9565029
    45679 2bcc:C (3.5) BS04 SIG 1.10.2.2 GO:0005737 ... P18946 9565029
    45680 2bcc:E (3.5) BS01 FES 7.1.1.8 GO:0008121 ... P13272 9565029
    45681 2bcd:A (2.1) BS01 peptide 3.1.3.16 GO:0000070 ... P36873 16343532
    45682 2bcd:A (2.1) BS02 MN 3.1.3.16 GO:0000070 ... P36873 16343532
    45683 2bcd:A (2.1) BS03 MN 3.1.3.16 GO:0000070 ... P36873 16343532
    45684 2bcg:G (1.48) BS01 GER ? GO:0005092 ... P39958 16395334
    45685 2bcg:G (1.48) BS02 GER ? GO:0005092 ... P39958 16395334
    45686 2bcg:Y (1.48) BS01 GDP ? GO:0000045 ... P01123 16395334
    45687 2bch:A (1.1) BS01 CA 3.1.1.4 GO:0002227 ... P00593 16790927
    45688 2bcj:Q (3.061) BS01 MG ? GO:0001501 ... P10824
    P21279
    16339447
    45689 2bcj:Q (3.061) BS02 ALF ? GO:0001501 ... P10824
    P21279
    16339447
    45690 2bcj:Q (3.061) BS03 GDP ? GO:0001501 ... P10824
    P21279
    16339447
    45691 2bcn:B (1.7) BS01 HEC ? GO:0005515 ... P00044 16478190
    45692 2bcx:A (2.0) BS01 peptide ? GO:0005509 ... P62149 17027503
    45693 2bcx:A (2.0) BS02 CA ? GO:0005509 ... P62149 17027503
    45694 2bcx:A (2.0) BS03 CA ? GO:0005509 ... P62149 17027503
    45695 2bcx:A (2.0) BS04 CA ? GO:0005509 ... P62149 17027503
    45696 2bcx:A (2.0) BS05 CA ? GO:0005509 ... P62149 17027503
    45697 2bd0:A (1.7) BS01 NAP 1.1.1.325 GO:0000166 ... Q8KES3 16308317
    45698 2bd0:B (1.7) BS01 NAP 1.1.1.325 GO:0000166 ... Q8KES3 16308317
    45699 2bd0:C (1.7) BS01 NAP 1.1.1.325 GO:0000166 ... Q8KES3 16308317
    45700 2bd0:D (1.7) BS01 NAP 1.1.1.325 GO:0000166 ... Q8KES3 16308317
    45701 2bd0:D (1.7) BS02 BIO 1.1.1.325 GO:0000166 ... Q8KES3 16308317
    45702 2bd1:A (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 16790927
    45703 2bd1:A (1.9) BS02 CA 3.1.1.4 GO:0002227 ... P00593 16790927
    45704 2bd1:B (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 16790927
    45705 2bd1:B (1.9) BS02 CA 3.1.1.4 GO:0002227 ... P00593 16790927
    45706 2bd2:A (1.7) BS01 peptide 3.4.21.36 GO:0004252 ... P00772 16754679
    45707 2bd2:A (1.7) BS02 ARG 3.4.21.36 GO:0004252 ... P00772 16754679
    45708 2bd2:A (1.7) BS03 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    45709 2bd3:A (1.6) BS01 peptide 3.4.21.36 GO:0004252 ... P00772 16754679
    45710 2bd3:A (1.6) BS02 LYS 3.4.21.36 GO:0004252 ... P00772 16754679
    45711 2bd3:A (1.6) BS03 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    45712 2bd3:A (1.6) BS04 ALA 3.4.21.36 GO:0004252 ... P00772 16754679
    45713 2bd4:A (1.7) BS01 peptide 3.4.21.36 GO:0004252 ... P00772 16754679
    45714 2bd4:A (1.7) BS02 LYS 3.4.21.36 GO:0004252 ... P00772 16754679
    45715 2bd4:A (1.7) BS03 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    45716 2bd5:A (1.8) BS01 peptide 3.4.21.36 GO:0004252 ... P00772 16754679
    45717 2bd5:A (1.8) BS02 LYS 3.4.21.36 GO:0004252 ... P00772 16754679
    45718 2bd5:A (1.8) BS03 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    45719 2bd7:A (1.6) BS01 peptide 3.4.21.36 GO:0004252 ... P00772 16754679
    45720 2bd7:A (1.6) BS02 ARG 3.4.21.36 GO:0004252 ... P00772 16754679
    45721 2bd7:A (1.6) BS03 PHE 3.4.21.36 GO:0004252 ... P00772 16754679
    45722 2bd7:A (1.6) BS04 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    45723 2bd8:A (1.7) BS01 peptide 3.4.21.36 GO:0004252 ... P00772 16754679
    45724 2bd8:A (1.7) BS02 ARG 3.4.21.36 GO:0004252 ... P00772 16754679
    45725 2bd8:A (1.7) BS03 PHE 3.4.21.36 GO:0004252 ... P00772 16754679
    45726 2bd8:A (1.7) BS04 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    45727 2bd9:A (1.9) BS01 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    45728 2bda:A (1.8) BS01 peptide 3.4.21.36 GO:0004252 ... P00772 16754679
    45729 2bda:A (1.8) BS02 ALA 3.4.21.36 GO:0004252 ... P00772 16754679
    45730 2bda:A (1.8) BS03 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    45731 2bdb:A (1.7) BS01 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    45732 2bdb:A (1.7) BS02 ALA 3.4.21.36 GO:0004252 ... P00772 16754679
    45733 2bdc:A (1.8) BS01 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    45734 2bdg:A (1.95) BS01 NI 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45735 2bdg:A (1.95) BS02 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45736 2bdg:B (1.95) BS01 NI 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45737 2bdg:B (1.95) BS02 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45738 2bdh:A (3.0) BS01 ZN 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45739 2bdh:A (3.0) BS02 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45740 2bdh:B (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45741 2bdh:C (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45742 2bdh:D (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45743 2bdi:A (3.0) BS01 CO 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45744 2bdi:A (3.0) BS02 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45745 2bdi:B (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45746 2bdi:C (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45747 2bdi:D (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45748 2bdi:E (3.0) BS01 CO 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45749 2bdi:E (3.0) BS02 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45750 2bdi:F (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45751 2bdi:G (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45752 2bdi:H (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45753 2bdi:I (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45754 2bdi:J (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45755 2bdi:K (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45756 2bdi:L (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45757 2bdi:M (3.0) BS01 CO 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45758 2bdi:M (3.0) BS02 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45759 2bdi:N (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45760 2bdi:O (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45761 2bdi:P (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    45762 2bdm:A (2.3) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 16373351
    45763 2bdm:A (2.3) BS02 TMI 1.14.14.1 GO:0004497 ... P00178 16373351 MOAD: ic50=0.9uM
    45764 2bdm:A (2.3) BS03 TMI 1.14.14.1 GO:0004497 ... P00178 16373351 MOAD: ic50=0.9uM
    45765 2bdm:A (2.3) BS04 TMI 1.14.14.1 GO:0004497 ... P00178 16373351 MOAD: ic50=0.9uM
    45766 2bdm:A (2.3) BS05 CM5 1.14.14.1 GO:0004497 ... P00178 16373351
    45767 2bdm:A (2.3) BS06 CM5 1.14.14.1 GO:0004497 ... P00178 16373351
    45768 2bdm:A (2.3) BS07 CM5 1.14.14.1 GO:0004497 ... P00178 16373351
    45769 2bdm:A (2.3) BS08 CM5 1.14.14.1 GO:0004497 ... P00178 16373351
    45770 2bdo:A (-1.00) BS01 BTN 6.4.1.2 GO:0003989 ... P0ABD8 10213607
    45771 2bdx:A (2.3) BS01 peptide 3.1.3.16 GO:0000070 ... P36873 16343532
    45772 2bdx:A (2.3) BS02 MN 3.1.3.16 GO:0000070 ... P36873 16343532
    45773 2bdx:A (2.3) BS03 MN 3.1.3.16 GO:0000070 ... P36873 16343532
    45774 2bdy:A (1.61) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 16290930
    45775 2bdy:A (1.61) BS02 UNB 3.4.21.5 GO:0004252 ... P00734 16290930 MOAD: ic50=0.017uM
    PDBbind: -logKd/Ki=7.77, IC50=17nM
    BindingDB: IC50=17nM
    45776 2bdz:A (2.1) BS01 E64 3.4.22.- GO:0004197 ... P84346 N/A
    45777 2bdz:A (2.1) BS02 E64 3.4.22.- GO:0004197 ... P84346 N/A
    45778 2bdz:B (2.1) BS01 E64 3.4.22.- GO:0004197 ... P84346 N/A
    45779 2bdz:C (2.1) BS01 E64 3.4.22.- GO:0004197 ... P84346 N/A
    45780 2bdz:D (2.1) BS01 E64 3.4.22.- GO:0004197 ... P84346 N/A
    45781 2bdz:D (2.1) BS02 E64 3.4.22.- GO:0004197 ... P84346 N/A
    45782 2be5:C (2.4) BS01 TGT 2.7.7.6 GO:0000428 ... Q8RQE9 16273103
    45783 2be5:D (2.4) BS01 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 16273103
    45784 2be5:D (2.4) BS02 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 16273103
    45785 2be5:D (2.4) BS03 MG 2.7.7.6 GO:0000287 ... Q8RQE8 16273103
    45786 2be5:D (2.4) BS04 TGT 2.7.7.6 GO:0000287 ... Q8RQE8 16273103
    45787 2be5:M (2.4) BS01 TGT 2.7.7.6 GO:0000428 ... Q8RQE9 16273103
    45788 2be5:N (2.4) BS01 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 16273103
    45789 2be5:N (2.4) BS02 MG 2.7.7.6 GO:0000287 ... Q8RQE8 16273103
    45790 2be5:N (2.4) BS03 TGT 2.7.7.6 GO:0000287 ... Q8RQE8 16273103
    45791 2be6:A (2.0) BS01 peptide ? GO:0000086 ... P0DP23 16299511
    45792 2be6:A (2.0) BS02 CA ? GO:0000086 ... P0DP23 16299511
    45793 2be6:A (2.0) BS03 CA ? GO:0000086 ... P0DP23 16299511
    45794 2be6:A (2.0) BS04 CA ? GO:0000086 ... P0DP23 16299511
    45795 2be6:A (2.0) BS05 CA ? GO:0000086 ... P0DP23 16299511
    45796 2be6:B (2.0) BS01 peptide ? GO:0000086 ... P0DP23 16299511
    45797 2be6:B (2.0) BS02 CA ? GO:0000086 ... P0DP23 16299511
    45798 2be6:B (2.0) BS03 CA ? GO:0000086 ... P0DP23 16299511
    45799 2be6:B (2.0) BS04 CA ? GO:0000086 ... P0DP23 16299511
    45800 2be6:B (2.0) BS05 CA ? GO:0000086 ... P0DP23 16299511

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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