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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    44801 2asd:B (1.95) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44802 2asd:B (1.95) BS06 DCP 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44803 2asf:A (1.6) BS01 CIT 1.3.98.- GO:0005515 ... P9WLL7 16880544
    44804 2ash:A (1.9) BS01 ZN 2.4.2.29 GO:0002099 ... Q9X1P7 N/A
    44805 2ash:B (1.9) BS01 ZN 2.4.2.29 GO:0002099 ... Q9X1P7 N/A
    44806 2ash:C (1.9) BS01 ZN 2.4.2.29 GO:0002099 ... Q9X1P7 N/A
    44807 2ash:D (1.9) BS01 ZN 2.4.2.29 GO:0002099 ... Q9X1P7 N/A
    44808 2asj:A (2.35) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44809 2asj:A (2.35) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44810 2asj:A (2.35) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44811 2asj:B (2.35) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44812 2asj:B (2.35) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44813 2asj:B (2.35) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44814 2asl:A (2.65) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44815 2asl:A (2.65) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44816 2asl:A (2.65) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44817 2asl:B (2.65) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44818 2asl:B (2.65) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44819 2asl:B (2.65) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44820 2asm:A (1.6) BS01 CA 3.6.4.- GO:0000287 ... P68135 16192358
    44821 2asm:A (1.6) BS02 ATP 3.6.4.- GO:0000287 ... P68135 16192358
    44822 2asm:A (1.6) BS03 RGA 3.6.4.- GO:0000287 ... P68135 16192358
    44823 2asn:X (1.7) BS01 HEM ? GO:0005576 ... Q26241 N/A
    44824 2aso:A (1.7) BS01 ATP 3.6.4.- GO:0000287 ... P68135 16192358
    44825 2aso:A (1.7) BS02 SPX 3.6.4.- GO:0000287 ... P68135 16192358
    44826 2asp:A (1.64) BS01 CA 3.6.4.- GO:0000287 ... P68135 16192358
    44827 2asp:A (1.64) BS02 ATP 3.6.4.- GO:0000287 ... P68135 16192358
    44828 2asp:A (1.64) BS03 RGC 3.6.4.- GO:0000287 ... P68135 16192358
    44829 2asq:A (-1.00) BS01 peptide ? GO:0001741 ... P63165 16204249
    44830 2asv:A (1.95) BS01 GLC 2.4.1.1 GO:0004645 ... P00490 N/A
    44831 2asv:A (1.95) BS02 GLC 2.4.1.1 GO:0004645 ... P00490 N/A
    44832 2asv:A (1.95) BS03 GLC 2.4.1.1 GO:0004645 ... P00490 N/A
    44833 2asv:A (1.95) BS04 GLC 2.4.1.1 GO:0004645 ... P00490 N/A
    44834 2asv:A (1.95) BS05 ASO 2.4.1.1 GO:0004645 ... P00490 N/A
    44835 2asv:A (1.95) BS06 PLP 2.4.1.1 GO:0004645 ... P00490 N/A
    44836 2asv:B (1.95) BS01 GLC 2.4.1.1 GO:0004645 ... P00490 N/A
    44837 2asv:B (1.95) BS02 GLC 2.4.1.1 GO:0004645 ... P00490 N/A
    44838 2asv:B (1.95) BS03 GLC 2.4.1.1 GO:0004645 ... P00490 N/A
    44839 2asv:B (1.95) BS04 GLC 2.4.1.1 GO:0004645 ... P00490 N/A
    44840 2asv:B (1.95) BS05 ASO 2.4.1.1 GO:0004645 ... P00490 N/A
    44841 2asv:B (1.95) BS06 PLP 2.4.1.1 GO:0004645 ... P00490 N/A
    44842 2at0:X (1.0) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 N/A
    44843 2at1:A (2.8) BS01 GLC 2.1.3.2 GO:0004070 ... P0A786 2405902
    44844 2at1:A (2.8) BS02 PCT 2.1.3.2 GO:0004070 ... P0A786 2405902
    44845 2at1:B (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 2405902
    44846 2at1:C (2.8) BS01 GLC 2.1.3.2 GO:0004070 ... P0A786 2405902
    44847 2at1:C (2.8) BS02 PCT 2.1.3.2 GO:0004070 ... P0A786 2405902
    44848 2at1:D (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 2405902
    44849 2at3:X (1.0) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 N/A
    44850 2at5:X (1.22) BS01 FDE 1.7.6.1 GO:0005576 ... Q94734 N/A
    44851 2at6:X (1.22) BS01 FDE 1.7.6.1 GO:0005576 ... Q94734 N/A
    44852 2at8:X (1.0) BS01 FDD 1.7.6.1 GO:0005576 ... Q94734 N/A
    44853 2at9:A (3.0) BS01 RET ? GO:0005216 ... P02945 10024456
    44854 2ata:A (2.2) BS01 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=84nM
    44855 2ata:A (2.2) BS02 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=84nM
    44856 2ata:A (2.2) BS03 ZN ? GO:0000976 ... P04637 16793544
    44857 2ata:B (2.2) BS01 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=84nM
    44858 2ata:B (2.2) BS02 ZN ? GO:0000976 ... P04637 16793544
    44859 2ata:C (2.2) BS01 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=84nM
    44860 2ata:C (2.2) BS02 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=84nM
    44861 2ata:C (2.2) BS03 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=84nM
    44862 2ata:C (2.2) BS04 ZN ? GO:0000976 ... P04637 16793544
    44863 2ata:D (2.2) BS01 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=84nM
    44864 2ata:D (2.2) BS02 ZN ? GO:0000976 ... P04637 16793544
    44865 2ata:D (2.2) BS03 ZN ? GO:0000976 ... P04637 16793544
    44866 2atc:B (3.0) BS01 ZN ? GO:0006207 ... P0A7F3 6757446
    44867 2ate:A (1.8) BS01 NIA 5.4.99.18 GO:0003824 ... P0AG18 17298082 PDBbind: -logKd/Ki=7.07, Kd=86nM
    44868 2atf:A (1.75) BS01 NI 1.13.11.20 GO:0005506 ... P60334 16492780
    44869 2ath:A (2.28) BS01 3EA ? GO:0003677 ... P37231 16366601 MOAD: ic50=0.152uM
    PDBbind: -logKd/Ki=6.82, IC50=0.152uM
    BindingDB: IC50=152nM, EC50=230nM
    44870 2ath:B (2.28) BS01 3EA ? GO:0003677 ... P37231 16366601 MOAD: ic50=0.152uM
    BindingDB: IC50=152nM, EC50=230nM
    44871 2ati:A (1.9) BS01 GLC 2.4.1.1 GO:0000166 ... P06737 16190745
    44872 2ati:A (1.9) BS02 IHU 2.4.1.1 GO:0000166 ... P06737 16190745 MOAD: ic50=23nM
    BindingDB: IC50=23nM
    44873 2ati:A (1.9) BS03 PLP 2.4.1.1 GO:0000166 ... P06737 16190745
    44874 2ati:A (1.9) BS04 IHU 2.4.1.1 GO:0000166 ... P06737 16190745 MOAD: ic50=23nM
    BindingDB: IC50=23nM
    44875 2ati:B (1.9) BS01 IHU 2.4.1.1 GO:0000166 ... P06737 16190745 MOAD: ic50=23nM
    BindingDB: IC50=23nM
    44876 2ati:B (1.9) BS02 GLC 2.4.1.1 GO:0000166 ... P06737 16190745
    44877 2ati:B (1.9) BS03 IHU 2.4.1.1 GO:0000166 ... P06737 16190745 MOAD: ic50=23nM
    BindingDB: IC50=23nM
    44878 2ati:B (1.9) BS04 PLP 2.4.1.1 GO:0000166 ... P06737 16190745
    44879 2atj:A (2.0) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9609699
    44880 2atj:A (2.0) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9609699
    44881 2atj:A (2.0) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9609699
    44882 2atj:A (2.0) BS04 BHO 1.11.1.7 GO:0004601 ... P00433 9609699
    44883 2atj:B (2.0) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9609699
    44884 2atj:B (2.0) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9609699
    44885 2atj:B (2.0) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9609699
    44886 2atj:B (2.0) BS04 BHO 1.11.1.7 GO:0004601 ... P00433 9609699
    44887 2atl:A (2.8) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44888 2atl:A (2.8) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44889 2atl:A (2.8) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44890 2atl:A (2.8) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44891 2atl:A (2.8) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44892 2atl:A (2.8) BS06 DCP 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44893 2atl:B (2.8) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44894 2atl:B (2.8) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44895 2atl:B (2.8) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44896 2atl:B (2.8) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44897 2atl:B (2.8) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44898 2atl:B (2.8) BS06 DCP 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44899 2ats:A (1.9) BS01 DLY 4.3.3.7 GO:0005737 ... P0A6L2 N/A
    44900 2ats:A (1.9) BS02 DLY 4.3.3.7 GO:0005737 ... P0A6L2 N/A
    44901 2ats:B (1.9) BS01 DLY 4.3.3.7 GO:0005737 ... P0A6L2 N/A
    44902 2ats:B (1.9) BS02 DLY 4.3.3.7 GO:0005737 ... P0A6L2 N/A
    44903 2atx:A (2.65) BS01 MG 3.6.5.2 GO:0003924 ... P17081 16246732
    44904 2atx:A (2.65) BS02 GNP 3.6.5.2 GO:0003924 ... P17081 16246732
    44905 2atx:B (2.65) BS01 MG 3.6.5.2 GO:0003924 ... P17081 16246732
    44906 2atx:B (2.65) BS02 GNP 3.6.5.2 GO:0003924 ... P17081 16246732
    44907 2au0:A (2.7) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44908 2au0:A (2.7) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44909 2au0:A (2.7) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44910 2au0:B (2.7) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44911 2au0:B (2.7) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 16379496
    44912 2au6:A (1.2) BS01 PO4 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    44913 2au6:A (1.2) BS02 MN 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    44914 2au6:A (1.2) BS03 MN 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    44915 2au6:A (1.2) BS04 F 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    44916 2au6:A (1.2) BS05 POP 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    44917 2au7:A (1.05) BS01 PO4 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    44918 2au7:A (1.05) BS02 MN 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    44919 2au7:A (1.05) BS03 MN 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    44920 2au7:A (1.05) BS04 MN 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    44921 2au8:A (1.65) BS01 PO4 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    44922 2au8:A (1.65) BS02 MN 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    44923 2au8:A (1.65) BS03 MN 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    44924 2au9:A (1.3) BS01 MN 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    44925 2au9:A (1.3) BS02 MN 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    44926 2au9:A (1.3) BS03 F 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    44927 2au9:A (1.3) BS04 POP 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    44928 2auc:C (2.6) BS01 peptide ? GO:0005509 ... D0VWV5 16547135
    44929 2auh:A (3.2) BS01 CA 2.7.10.1 GO:0004672 ... P06213 16246733
    44930 2auo:A (1.53) BS01 HEM ? GO:0001666 ... P02213 16262242
    44931 2auo:A (1.53) BS02 HEM ? GO:0001666 ... P02213 16262242
    44932 2auo:B (1.53) BS01 HEM ? GO:0001666 ... P02213 16262242
    44933 2aup:A (1.8) BS01 HEM ? GO:0001666 ... P02213 16262242
    44934 2aup:B (1.8) BS01 HEM ? GO:0001666 ... P02213 16262242
    44935 2aup:B (1.8) BS02 HEM ? GO:0001666 ... P02213 16262242
    44936 2auq:A (1.8) BS01 HEM ? GO:0001666 ... P02213 16262242
    44937 2auq:A (1.8) BS02 HEM ? GO:0001666 ... P02213 16262242
    44938 2auq:B (1.8) BS01 HEM ? GO:0001666 ... P02213 16262242
    44939 2aur:A (2.3) BS01 HEM ? GO:0001666 ... P02213 16262242
    44940 2aur:A (2.3) BS02 HEM ? GO:0001666 ... P02213 16262242
    44941 2aur:B (2.3) BS01 HEM ? GO:0001666 ... P02213 16262242
    44942 2aur:B (2.3) BS02 HEM ? GO:0001666 ... P02213 16262242
    44943 2aus:B (2.1) BS01 ZN ? GO:0001522 ... Q9V0E3 16456033
    44944 2aus:D (2.1) BS01 ZN ? GO:0001522 ... Q9V0E3 16456033
    44945 2aut:A (2.25) BS01 MG 3.1.3.2 GO:0003993 ... Q540U1 17570338
    44946 2aut:B (2.25) BS01 MG 3.1.3.2 GO:0003993 ... Q540U1 17570338
    44947 2aut:C (2.25) BS01 MG 3.1.3.2 GO:0003993 ... Q540U1 17570338
    44948 2aut:D (2.25) BS01 MG 3.1.3.2 GO:0003993 ... Q540U1 17570338
    44949 2aut:D (2.25) BS02 PO4 3.1.3.2 GO:0003993 ... Q540U1 17570338
    44950 2auu:A (1.22) BS01 MG 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    44951 2auu:A (1.22) BS02 MG 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    44952 2auu:A (1.22) BS03 F 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    44953 2auu:A (1.22) BS04 POP 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    44954 2av0:A (1.5) BS01 HEM ? GO:0001666 ... P02213 16262242
    44955 2av0:A (1.5) BS02 HEM ? GO:0001666 ... P02213 16262242
    44956 2av0:B (1.5) BS01 HEM ? GO:0001666 ... P02213 16262242
    44957 2av0:B (1.5) BS02 HEM ? GO:0001666 ... P02213 16262242
    44958 2av3:A (1.7) BS01 HEM ? GO:0001666 ... P02213 16262242
    44959 2av3:A (1.7) BS02 HEM ? GO:0001666 ... P02213 16262242
    44960 2av3:B (1.7) BS01 HEM ? GO:0001666 ... P02213 16262242
    44961 2av3:B (1.7) BS02 HEM ? GO:0001666 ... P02213 16262242
    44962 2av6:A (2.01) BS01 BGC 2.4.1.1 GO:0004645 ... P00490 18164678
    44963 2av6:A (2.01) BS02 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    44964 2av6:A (2.01) BS03 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    44965 2av6:A (2.01) BS04 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    44966 2av6:A (2.01) BS05 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    44967 2av6:A (2.01) BS06 NO3 2.4.1.1 GO:0004645 ... P00490 18164678
    44968 2av6:A (2.01) BS07 PLP 2.4.1.1 GO:0004645 ... P00490 18164678
    44969 2av6:B (2.01) BS01 BGC 2.4.1.1 GO:0004645 ... P00490 18164678
    44970 2av6:B (2.01) BS02 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    44971 2av6:B (2.01) BS03 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    44972 2av6:B (2.01) BS04 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    44973 2av6:B (2.01) BS05 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    44974 2av6:B (2.01) BS06 NO3 2.4.1.1 GO:0004645 ... P00490 18164678
    44975 2av6:B (2.01) BS07 PLP 2.4.1.1 GO:0004645 ... P00490 18164678
    44976 2av8:A (2.46) BS01 FE2 1.17.4.1 GO:0004748 ... P69924 9558317
    44977 2av8:A (2.46) BS02 FEO 1.17.4.1 GO:0004748 ... P69924 9558317
    44978 2av8:B (2.46) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 9558317
    44979 2avf:A (2.6) BS01 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    44980 2avf:A (2.6) BS02 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    44981 2avf:B (2.6) BS01 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    44982 2avf:B (2.6) BS02 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    44983 2avf:C (2.6) BS01 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    44984 2avf:C (2.6) BS02 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    44985 2avf:D (2.6) BS01 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    44986 2avf:D (2.6) BS02 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    44987 2avf:E (2.6) BS01 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    44988 2avf:E (2.6) BS02 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    44989 2avf:F (2.6) BS01 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    44990 2avf:F (2.6) BS02 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    44991 2avi:A (3.0) BS01 BTN ? GO:0005576 ... P02701 8506353 PDBbind: -logKd/Ki=15.22, Kd=0.6fM
    44992 2avi:B (3.0) BS01 BTN ? GO:0005576 ... P02701 8506353
    44993 2avu:E (3.0) BS01 ZN ? GO:0003677 ... P0ABY7 16337229
    44994 2avu:F (3.0) BS01 ZN ? GO:0003677 ... P0ABY7 16337229
    44995 2aw1:A (1.46) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 16290146
    44996 2aw1:A (1.46) BS02 HGB 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 16290146
    44997 2aw1:A (1.46) BS03 COX 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 16290146 MOAD: Ki=43nM
    PDBbind: -logKd/Ki=7.37, Ki=43nM
    BindingDB: Ki=43nM, IC50=43nM
    44998 2aw3:A (2.2) BS01 BGC 2.4.1.1 GO:0004645 ... P00490 18164678
    44999 2aw3:A (2.2) BS02 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    45000 2aw3:A (2.2) BS03 GLC 2.4.1.1 GO:0004645 ... P00490 18164678

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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