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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    37001 1vy5:DQ (2.55) BS03 rna ? GO:0000049 ... P60489 25132179
    37002 1vy5:DQ (2.55) BS04 MG ? GO:0000049 ... P60489 25132179
    37003 1vy5:DQ (2.55) BS05 MG ? GO:0000049 ... P60489 25132179
    37004 1vy5:DQ (2.55) BS06 MG ? GO:0000049 ... P60489 25132179
    37005 1vy5:DR (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    37006 1vy5:DS (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    37007 1vy5:DS (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    37008 1vy5:DT (2.55) BS01 rna ? GO:0003735 ... P60490 25132179
    37009 1vy5:DT (2.55) BS02 rna ? GO:0003735 ... P60490 25132179
    37010 1vy5:DU (2.55) BS01 rna ? GO:0000027 ... P60491 25132179
    37011 1vy5:DU (2.55) BS02 MG ? GO:0000027 ... P60491 25132179
    37012 1vy5:DU (2.55) BS03 MG ? GO:0000027 ... P60491 25132179
    37013 1vy5:DU (2.55) BS04 MG ? GO:0000027 ... P60491 25132179
    37014 1vy5:DV (2.55) BS01 rna ? GO:0003723 ... P60492 25132179
    37015 1vy5:DV (2.55) BS02 MG ? GO:0003723 ... P60492 25132179
    37016 1vy5:DV (2.55) BS03 MG ? GO:0003723 ... P60492 25132179
    37017 1vy5:DV (2.55) BS04 MG ? GO:0003723 ... P60492 25132179
    37018 1vy5:DW (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    37019 1vy5:DW (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    37020 1vy5:DW (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 25132179
    37021 1vy5:DX (2.55) BS01 rna ? GO:0000027 ... Q5SHP0 25132179
    37022 1vy5:DY (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    37023 1vy5:DY (2.55) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    37024 1vy5:DZ (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    37025 1vy5:DZ (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    37026 1vy6:AB (2.9) BS01 rna ? GO:0003735 ... P80371 25132179
    37027 1vy6:AC (2.9) BS01 rna ? GO:0003676 ... P80372 25132179
    37028 1vy6:AD (2.9) BS01 rna ? GO:0003723 ... P80373 25132179
    37029 1vy6:AD (2.9) BS02 SF4 ? GO:0003723 ... P80373 25132179
    37030 1vy6:AE (2.9) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    37031 1vy6:AF (2.9) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    37032 1vy6:AG (2.9) BS01 rna ? GO:0000028 ... P17291 25132179
    37033 1vy6:AH (2.9) BS01 rna N/A GO:0003735 ... N/A 25132179
    37034 1vy6:AI (2.9) BS01 rna ? GO:0000049 ... P80374 25132179
    37035 1vy6:AI (2.9) BS02 rna ? GO:0000049 ... P80374 25132179
    37036 1vy6:AJ (2.9) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    37037 1vy6:AK (2.9) BS01 rna ? GO:0003735 ... P80376 25132179
    37038 1vy6:AK (2.9) BS02 MG ? GO:0003735 ... P80376 25132179
    37039 1vy6:AL (2.9) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    37040 1vy6:AL (2.9) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    37041 1vy6:AL (2.9) BS03 MG ? GO:0000049 ... Q5SHN3 25132179
    37042 1vy6:AM (2.9) BS01 rna ? GO:0000049 ... P80377 25132179
    37043 1vy6:AM (2.9) BS02 rna ? GO:0000049 ... P80377 25132179
    37044 1vy6:AM (2.9) BS03 MG ? GO:0000049 ... P80377 25132179
    37045 1vy6:AN (2.9) BS01 rna N/A GO:0003735 ... N/A 25132179
    37046 1vy6:AN (2.9) BS02 ZN N/A GO:0003735 ... N/A 25132179
    37047 1vy6:AO (2.9) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    37048 1vy6:AO (2.9) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    37049 1vy6:AP (2.9) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    37050 1vy6:AQ (2.9) BS01 rna N/A GO:0003735 ... N/A 25132179
    37051 1vy6:AR (2.9) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    37052 1vy6:AS (2.9) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    37053 1vy6:AT (2.9) BS01 rna ? GO:0003723 ... P80380 25132179
    37054 1vy6:B0 (2.9) BS01 rna ? GO:0003735 ... P60493 25132179
    37055 1vy6:B0 (2.9) BS02 rna ? GO:0003735 ... P60493 25132179
    37056 1vy6:B0 (2.9) BS03 rna ? GO:0003735 ... P60493 25132179
    37057 1vy6:B0 (2.9) BS04 MG ? GO:0003735 ... P60493 25132179
    37058 1vy6:B0 (2.9) BS05 MG ? GO:0003735 ... P60493 25132179
    37059 1vy6:B1 (2.9) BS01 rna ? GO:0003735 ... P60494 25132179
    37060 1vy6:B2 (2.9) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    37061 1vy6:B3 (2.9) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    37062 1vy6:B3 (2.9) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    37063 1vy6:B4 (2.9) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    37064 1vy6:B4 (2.9) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    37065 1vy6:B5 (2.9) BS01 rna ? GO:0003735 ... P80339 25132179
    37066 1vy6:B5 (2.9) BS02 MG ? GO:0003735 ... P80339 25132179
    37067 1vy6:B5 (2.9) BS03 ZN ? GO:0003735 ... P80339 25132179
    37068 1vy6:B6 (2.9) BS01 rna ? GO:0000049 ... P35871 25132179
    37069 1vy6:B6 (2.9) BS02 MG ? GO:0000049 ... P35871 25132179
    37070 1vy6:B6 (2.9) BS03 ZN ? GO:0000049 ... P35871 25132179
    37071 1vy6:B7 (2.9) BS01 rna ? GO:0003735 ... P80340 25132179
    37072 1vy6:B7 (2.9) BS02 MG ? GO:0003735 ... P80340 25132179
    37073 1vy6:B7 (2.9) BS03 MG ? GO:0003735 ... P80340 25132179
    37074 1vy6:B8 (2.9) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    37075 1vy6:B9 (2.9) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    37076 1vy6:B9 (2.9) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    37077 1vy6:BD (2.9) BS01 rna ? GO:0002181 ... P60405 25132179
    37078 1vy6:BD (2.9) BS02 MG ? GO:0002181 ... P60405 25132179
    37079 1vy6:BD (2.9) BS03 MG ? GO:0002181 ... P60405 25132179
    37080 1vy6:BD (2.9) BS04 MG ? GO:0002181 ... P60405 25132179
    37081 1vy6:BD (2.9) BS05 MG ? GO:0002181 ... P60405 25132179
    37082 1vy6:BD (2.9) BS06 MG ? GO:0002181 ... P60405 25132179
    37083 1vy6:BD (2.9) BS07 MG ? GO:0002181 ... P60405 25132179
    37084 1vy6:BE (2.9) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    37085 1vy6:BE (2.9) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    37086 1vy6:BE (2.9) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    37087 1vy6:BF (2.9) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    37088 1vy6:BF (2.9) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    37089 1vy6:BF (2.9) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    37090 1vy6:BF (2.9) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    37091 1vy6:BG (2.9) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    37092 1vy6:BG (2.9) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    37093 1vy6:BG (2.9) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    37094 1vy6:BG (2.9) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    37095 1vy6:BG (2.9) BS05 MG ? GO:0000049 ... Q5SHQ0 25132179
    37096 1vy6:BH (2.9) BS01 rna N/A GO:0003735 ... N/A 25132179
    37097 1vy6:BI (2.9) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    37098 1vy6:BN (2.9) BS01 rna ? GO:0003729 ... P60488 25132179
    37099 1vy6:BN (2.9) BS02 MG ? GO:0003729 ... P60488 25132179
    37100 1vy6:BO (2.9) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    37101 1vy6:BO (2.9) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    37102 1vy6:BP (2.9) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    37103 1vy6:BP (2.9) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    37104 1vy6:BP (2.9) BS03 MG ? GO:0003735 ... Q5SHQ7 25132179
    37105 1vy6:BQ (2.9) BS01 rna ? GO:0000049 ... P60489 25132179
    37106 1vy6:BQ (2.9) BS02 rna ? GO:0000049 ... P60489 25132179
    37107 1vy6:BQ (2.9) BS03 MG ? GO:0000049 ... P60489 25132179
    37108 1vy6:BQ (2.9) BS04 MG ? GO:0000049 ... P60489 25132179
    37109 1vy6:BR (2.9) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    37110 1vy6:BR (2.9) BS02 MG ? GO:0003735 ... Q9Z9H5 25132179
    37111 1vy6:BR (2.9) BS03 MG ? GO:0003735 ... Q9Z9H5 25132179
    37112 1vy6:BS (2.9) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    37113 1vy6:BS (2.9) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    37114 1vy6:BT (2.9) BS01 rna ? GO:0003735 ... P60490 25132179
    37115 1vy6:BT (2.9) BS02 rna ? GO:0003735 ... P60490 25132179
    37116 1vy6:BU (2.9) BS01 rna ? GO:0000027 ... P60491 25132179
    37117 1vy6:BU (2.9) BS02 MG ? GO:0000027 ... P60491 25132179
    37118 1vy6:BV (2.9) BS01 rna ? GO:0003723 ... P60492 25132179
    37119 1vy6:BV (2.9) BS02 MG ? GO:0003723 ... P60492 25132179
    37120 1vy6:BV (2.9) BS03 MG ? GO:0003723 ... P60492 25132179
    37121 1vy6:BV (2.9) BS04 MG ? GO:0003723 ... P60492 25132179
    37122 1vy6:BV (2.9) BS05 MG ? GO:0003723 ... P60492 25132179
    37123 1vy6:BW (2.9) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    37124 1vy6:BW (2.9) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    37125 1vy6:BW (2.9) BS03 MG ? GO:0003735 ... Q5SHP3 25132179
    37126 1vy6:BX (2.9) BS01 rna ? GO:0000027 ... Q5SHP0 25132179
    37127 1vy6:BY (2.9) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    37128 1vy6:BY (2.9) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    37129 1vy6:BZ (2.9) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    37130 1vy6:BZ (2.9) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    37131 1vy6:CB (2.9) BS01 rna ? GO:0003735 ... P80371 25132179
    37132 1vy6:CC (2.9) BS01 rna ? GO:0003676 ... P80372 25132179
    37133 1vy6:CD (2.9) BS01 rna ? GO:0003723 ... P80373 25132179
    37134 1vy6:CD (2.9) BS02 SF4 ? GO:0003723 ... P80373 25132179
    37135 1vy6:CE (2.9) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    37136 1vy6:CE (2.9) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    37137 1vy6:CE (2.9) BS03 MG ? GO:0003723 ... Q5SHQ5 25132179
    37138 1vy6:CF (2.9) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    37139 1vy6:CG (2.9) BS01 rna ? GO:0000028 ... P17291 25132179
    37140 1vy6:CH (2.9) BS01 rna N/A GO:0003735 ... N/A 25132179
    37141 1vy6:CI (2.9) BS01 rna ? GO:0000049 ... P80374 25132179
    37142 1vy6:CI (2.9) BS02 rna ? GO:0000049 ... P80374 25132179
    37143 1vy6:CJ (2.9) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    37144 1vy6:CK (2.9) BS01 rna ? GO:0003735 ... P80376 25132179
    37145 1vy6:CK (2.9) BS02 MG ? GO:0003735 ... P80376 25132179
    37146 1vy6:CL (2.9) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    37147 1vy6:CM (2.9) BS01 rna ? GO:0000049 ... P80377 25132179
    37148 1vy6:CM (2.9) BS02 rna ? GO:0000049 ... P80377 25132179
    37149 1vy6:CN (2.9) BS01 rna N/A GO:0003735 ... N/A 25132179
    37150 1vy6:CN (2.9) BS02 ZN N/A GO:0003735 ... N/A 25132179
    37151 1vy6:CO (2.9) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    37152 1vy6:CO (2.9) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    37153 1vy6:CP (2.9) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    37154 1vy6:CQ (2.9) BS01 rna N/A GO:0003735 ... N/A 25132179
    37155 1vy6:CR (2.9) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    37156 1vy6:CS (2.9) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    37157 1vy6:CT (2.9) BS01 rna ? GO:0003723 ... P80380 25132179
    37158 1vy6:CT (2.9) BS02 MG ? GO:0003723 ... P80380 25132179
    37159 1vy6:D0 (2.9) BS01 rna ? GO:0003735 ... P60493 25132179
    37160 1vy6:D0 (2.9) BS02 rna ? GO:0003735 ... P60493 25132179
    37161 1vy6:D0 (2.9) BS03 rna ? GO:0003735 ... P60493 25132179
    37162 1vy6:D1 (2.9) BS01 rna ? GO:0003735 ... P60494 25132179
    37163 1vy6:D1 (2.9) BS02 MG ? GO:0003735 ... P60494 25132179
    37164 1vy6:D2 (2.9) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    37165 1vy6:D3 (2.9) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    37166 1vy6:D3 (2.9) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    37167 1vy6:D3 (2.9) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    37168 1vy6:D4 (2.9) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    37169 1vy6:D4 (2.9) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    37170 1vy6:D5 (2.9) BS01 rna ? GO:0003735 ... P80339 25132179
    37171 1vy6:D5 (2.9) BS02 MG ? GO:0003735 ... P80339 25132179
    37172 1vy6:D5 (2.9) BS03 ZN ? GO:0003735 ... P80339 25132179
    37173 1vy6:D5 (2.9) BS04 MG ? GO:0003735 ... P80339 25132179
    37174 1vy6:D6 (2.9) BS01 rna ? GO:0000049 ... P35871 25132179
    37175 1vy6:D6 (2.9) BS02 ZN ? GO:0000049 ... P35871 25132179
    37176 1vy6:D7 (2.9) BS01 rna ? GO:0003735 ... P80340 25132179
    37177 1vy6:D8 (2.9) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    37178 1vy6:D9 (2.9) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    37179 1vy6:D9 (2.9) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    37180 1vy6:DD (2.9) BS01 rna ? GO:0002181 ... P60405 25132179
    37181 1vy6:DD (2.9) BS02 rna ? GO:0002181 ... P60405 25132179
    37182 1vy6:DD (2.9) BS03 MG ? GO:0002181 ... P60405 25132179
    37183 1vy6:DD (2.9) BS04 MG ? GO:0002181 ... P60405 25132179
    37184 1vy6:DE (2.9) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    37185 1vy6:DE (2.9) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    37186 1vy6:DF (2.9) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    37187 1vy6:DF (2.9) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    37188 1vy6:DG (2.9) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    37189 1vy6:DG (2.9) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    37190 1vy6:DG (2.9) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    37191 1vy6:DG (2.9) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    37192 1vy6:DH (2.9) BS01 rna N/A GO:0003735 ... N/A 25132179
    37193 1vy6:DI (2.9) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    37194 1vy6:DN (2.9) BS01 rna ? GO:0003729 ... P60488 25132179
    37195 1vy6:DO (2.9) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    37196 1vy6:DO (2.9) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    37197 1vy6:DP (2.9) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    37198 1vy6:DP (2.9) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    37199 1vy6:DQ (2.9) BS01 rna ? GO:0000049 ... P60489 25132179
    37200 1vy6:DQ (2.9) BS02 rna ? GO:0000049 ... P60489 25132179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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