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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    36601 1vy4:B0 (2.6) BS03 MG ? GO:0003735 ... P60493 25132179
    36602 1vy4:B1 (2.6) BS01 rna ? GO:0003735 ... P60494 25132179
    36603 1vy4:B1 (2.6) BS02 rna ? GO:0003735 ... P60494 25132179
    36604 1vy4:B2 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    36605 1vy4:B3 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    36606 1vy4:B3 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    36607 1vy4:B4 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    36608 1vy4:B4 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    36609 1vy4:B5 (2.6) BS01 rna ? GO:0003735 ... P80339 25132179
    36610 1vy4:B5 (2.6) BS02 MG ? GO:0003735 ... P80339 25132179
    36611 1vy4:B5 (2.6) BS03 ZN ? GO:0003735 ... P80339 25132179
    36612 1vy4:B6 (2.6) BS01 rna ? GO:0000049 ... P35871 25132179
    36613 1vy4:B6 (2.6) BS02 ZN ? GO:0000049 ... P35871 25132179
    36614 1vy4:B7 (2.6) BS01 rna ? GO:0003735 ... P80340 25132179
    36615 1vy4:B7 (2.6) BS02 MG ? GO:0003735 ... P80340 25132179
    36616 1vy4:B7 (2.6) BS03 MG ? GO:0003735 ... P80340 25132179
    36617 1vy4:B7 (2.6) BS04 MG ? GO:0003735 ... P80340 25132179
    36618 1vy4:B8 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    36619 1vy4:B8 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 25132179
    36620 1vy4:B9 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    36621 1vy4:B9 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    36622 1vy4:BD (2.6) BS01 rna ? GO:0002181 ... P60405 25132179
    36623 1vy4:BD (2.6) BS02 rna ? GO:0002181 ... P60405 25132179
    36624 1vy4:BD (2.6) BS03 MG ? GO:0002181 ... P60405 25132179
    36625 1vy4:BD (2.6) BS04 MG ? GO:0002181 ... P60405 25132179
    36626 1vy4:BD (2.6) BS05 MG ? GO:0002181 ... P60405 25132179
    36627 1vy4:BD (2.6) BS06 MG ? GO:0002181 ... P60405 25132179
    36628 1vy4:BD (2.6) BS07 MG ? GO:0002181 ... P60405 25132179
    36629 1vy4:BD (2.6) BS08 MG ? GO:0002181 ... P60405 25132179
    36630 1vy4:BD (2.6) BS09 MG ? GO:0002181 ... P60405 25132179
    36631 1vy4:BD (2.6) BS10 MG ? GO:0002181 ... P60405 25132179
    36632 1vy4:BD (2.6) BS11 MG ? GO:0002181 ... P60405 25132179
    36633 1vy4:BD (2.6) BS12 MG ? GO:0002181 ... P60405 25132179
    36634 1vy4:BD (2.6) BS13 MG ? GO:0002181 ... P60405 25132179
    36635 1vy4:BE (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    36636 1vy4:BE (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    36637 1vy4:BF (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    36638 1vy4:BF (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    36639 1vy4:BF (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    36640 1vy4:BF (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    36641 1vy4:BF (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    36642 1vy4:BF (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 25132179
    36643 1vy4:BF (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 25132179
    36644 1vy4:BF (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 25132179
    36645 1vy4:BF (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 25132179
    36646 1vy4:BG (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    36647 1vy4:BG (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    36648 1vy4:BG (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    36649 1vy4:BG (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    36650 1vy4:BG (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 25132179
    36651 1vy4:BH (2.6) BS01 rna ? GO:0002181 ... P0DOY8 25132179
    36652 1vy4:BH (2.6) BS02 MG ? GO:0002181 ... P0DOY8 25132179
    36653 1vy4:BI (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    36654 1vy4:BN (2.6) BS01 rna ? GO:0003729 ... P60488 25132179
    36655 1vy4:BN (2.6) BS02 MG ? GO:0003729 ... P60488 25132179
    36656 1vy4:BO (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    36657 1vy4:BO (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    36658 1vy4:BP (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    36659 1vy4:BP (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    36660 1vy4:BP (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 25132179
    36661 1vy4:BQ (2.6) BS01 rna ? GO:0000049 ... P60489 25132179
    36662 1vy4:BQ (2.6) BS02 rna ? GO:0000049 ... P60489 25132179
    36663 1vy4:BQ (2.6) BS03 rna ? GO:0000049 ... P60489 25132179
    36664 1vy4:BQ (2.6) BS04 MG ? GO:0000049 ... P60489 25132179
    36665 1vy4:BQ (2.6) BS05 MG ? GO:0000049 ... P60489 25132179
    36666 1vy4:BR (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    36667 1vy4:BR (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 25132179
    36668 1vy4:BR (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 25132179
    36669 1vy4:BS (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    36670 1vy4:BS (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    36671 1vy4:BT (2.6) BS01 rna ? GO:0003735 ... P60490 25132179
    36672 1vy4:BT (2.6) BS02 rna ? GO:0003735 ... P60490 25132179
    36673 1vy4:BU (2.6) BS01 rna ? GO:0000027 ... P60491 25132179
    36674 1vy4:BU (2.6) BS02 MG ? GO:0000027 ... P60491 25132179
    36675 1vy4:BU (2.6) BS03 MG ? GO:0000027 ... P60491 25132179
    36676 1vy4:BU (2.6) BS04 MG ? GO:0000027 ... P60491 25132179
    36677 1vy4:BU (2.6) BS05 MG ? GO:0000027 ... P60491 25132179
    36678 1vy4:BU (2.6) BS06 MG ? GO:0000027 ... P60491 25132179
    36679 1vy4:BV (2.6) BS01 rna ? GO:0003723 ... P60492 25132179
    36680 1vy4:BV (2.6) BS02 MG ? GO:0003723 ... P60492 25132179
    36681 1vy4:BV (2.6) BS03 MG ? GO:0003723 ... P60492 25132179
    36682 1vy4:BV (2.6) BS04 MG ? GO:0003723 ... P60492 25132179
    36683 1vy4:BV (2.6) BS05 MG ? GO:0003723 ... P60492 25132179
    36684 1vy4:BW (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    36685 1vy4:BW (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    36686 1vy4:BX (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 25132179
    36687 1vy4:BX (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 25132179
    36688 1vy4:BY (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    36689 1vy4:BY (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    36690 1vy4:BZ (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    36691 1vy4:BZ (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    36692 1vy4:CB (2.6) BS01 rna ? GO:0003735 ... P80371 25132179
    36693 1vy4:CC (2.6) BS01 rna ? GO:0003676 ... P80372 25132179
    36694 1vy4:CD (2.6) BS01 rna ? GO:0003723 ... P80373 25132179
    36695 1vy4:CD (2.6) BS02 SF4 ? GO:0003723 ... P80373 25132179
    36696 1vy4:CE (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    36697 1vy4:CE (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    36698 1vy4:CF (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    36699 1vy4:CF (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 25132179
    36700 1vy4:CG (2.6) BS01 rna ? GO:0000028 ... P17291 25132179
    36701 1vy4:CG (2.6) BS02 rna ? GO:0000028 ... P17291 25132179
    36702 1vy4:CH (2.6) BS01 rna ? GO:0003735 ... P0DOY9 25132179
    36703 1vy4:CI (2.6) BS01 rna ? GO:0000049 ... P80374 25132179
    36704 1vy4:CI (2.6) BS02 rna ? GO:0000049 ... P80374 25132179
    36705 1vy4:CJ (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    36706 1vy4:CJ (2.6) BS02 MG ? GO:0000049 ... Q5SHN7 25132179
    36707 1vy4:CK (2.6) BS01 rna ? GO:0003735 ... P80376 25132179
    36708 1vy4:CL (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    36709 1vy4:CL (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    36710 1vy4:CM (2.6) BS01 rna ? GO:0000049 ... P80377 25132179
    36711 1vy4:CM (2.6) BS02 rna ? GO:0000049 ... P80377 25132179
    36712 1vy4:CM (2.6) BS03 rna ? GO:0000049 ... P80377 25132179
    36713 1vy4:CN (2.6) BS01 rna ? GO:0003735 ... P0DOY6 25132179
    36714 1vy4:CN (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 25132179
    36715 1vy4:CO (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    36716 1vy4:CO (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    36717 1vy4:CP (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    36718 1vy4:CQ (2.6) BS01 rna ? GO:0003735 ... P0DOY7 25132179
    36719 1vy4:CR (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    36720 1vy4:CS (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    36721 1vy4:CT (2.6) BS01 rna ? GO:0003723 ... P80380 25132179
    36722 1vy4:CT (2.6) BS02 MG ? GO:0003723 ... P80380 25132179
    36723 1vy4:D0 (2.6) BS01 rna ? GO:0003735 ... P60493 25132179
    36724 1vy4:D0 (2.6) BS02 rna ? GO:0003735 ... P60493 25132179
    36725 1vy4:D1 (2.6) BS01 rna ? GO:0003735 ... P60494 25132179
    36726 1vy4:D1 (2.6) BS02 rna ? GO:0003735 ... P60494 25132179
    36727 1vy4:D2 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    36728 1vy4:D3 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    36729 1vy4:D3 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    36730 1vy4:D3 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    36731 1vy4:D4 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    36732 1vy4:D4 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    36733 1vy4:D5 (2.6) BS01 rna ? GO:0003735 ... P80339 25132179
    36734 1vy4:D5 (2.6) BS02 ZN ? GO:0003735 ... P80339 25132179
    36735 1vy4:D6 (2.6) BS01 rna ? GO:0000049 ... P35871 25132179
    36736 1vy4:D6 (2.6) BS02 ZN ? GO:0000049 ... P35871 25132179
    36737 1vy4:D7 (2.6) BS01 rna ? GO:0003735 ... P80340 25132179
    36738 1vy4:D8 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    36739 1vy4:D9 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    36740 1vy4:D9 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    36741 1vy4:DD (2.6) BS01 rna ? GO:0002181 ... P60405 25132179
    36742 1vy4:DD (2.6) BS02 rna ? GO:0002181 ... P60405 25132179
    36743 1vy4:DD (2.6) BS03 MG ? GO:0002181 ... P60405 25132179
    36744 1vy4:DD (2.6) BS04 MG ? GO:0002181 ... P60405 25132179
    36745 1vy4:DD (2.6) BS05 MG ? GO:0002181 ... P60405 25132179
    36746 1vy4:DE (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    36747 1vy4:DE (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    36748 1vy4:DE (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    36749 1vy4:DF (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    36750 1vy4:DF (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    36751 1vy4:DF (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    36752 1vy4:DG (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    36753 1vy4:DG (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    36754 1vy4:DG (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    36755 1vy4:DG (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    36756 1vy4:DH (2.6) BS01 rna ? GO:0002181 ... P0DOY8 25132179
    36757 1vy4:DI (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    36758 1vy4:DN (2.6) BS01 rna ? GO:0003729 ... P60488 25132179
    36759 1vy4:DO (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    36760 1vy4:DO (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    36761 1vy4:DP (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    36762 1vy4:DQ (2.6) BS01 rna ? GO:0000049 ... P60489 25132179
    36763 1vy4:DQ (2.6) BS02 rna ? GO:0000049 ... P60489 25132179
    36764 1vy4:DQ (2.6) BS03 rna ? GO:0000049 ... P60489 25132179
    36765 1vy4:DQ (2.6) BS04 MG ? GO:0000049 ... P60489 25132179
    36766 1vy4:DQ (2.6) BS05 MG ? GO:0000049 ... P60489 25132179
    36767 1vy4:DR (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    36768 1vy4:DS (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    36769 1vy4:DS (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    36770 1vy4:DT (2.6) BS01 rna ? GO:0003735 ... P60490 25132179
    36771 1vy4:DT (2.6) BS02 rna ? GO:0003735 ... P60490 25132179
    36772 1vy4:DU (2.6) BS01 rna ? GO:0000027 ... P60491 25132179
    36773 1vy4:DU (2.6) BS02 MG ? GO:0000027 ... P60491 25132179
    36774 1vy4:DU (2.6) BS03 MG ? GO:0000027 ... P60491 25132179
    36775 1vy4:DV (2.6) BS01 rna ? GO:0003723 ... P60492 25132179
    36776 1vy4:DV (2.6) BS02 MG ? GO:0003723 ... P60492 25132179
    36777 1vy4:DV (2.6) BS03 MG ? GO:0003723 ... P60492 25132179
    36778 1vy4:DW (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    36779 1vy4:DW (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    36780 1vy4:DX (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 25132179
    36781 1vy4:DY (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    36782 1vy4:DY (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    36783 1vy4:DZ (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    36784 1vy4:DZ (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    36785 1vy5:AB (2.55) BS01 rna ? GO:0003735 ... P80371 25132179
    36786 1vy5:AC (2.55) BS01 rna ? GO:0003676 ... P80372 25132179
    36787 1vy5:AD (2.55) BS01 rna ? GO:0003723 ... P80373 25132179
    36788 1vy5:AD (2.55) BS02 SF4 ? GO:0003723 ... P80373 25132179
    36789 1vy5:AE (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    36790 1vy5:AE (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    36791 1vy5:AE (2.55) BS03 MG ? GO:0003723 ... Q5SHQ5 25132179
    36792 1vy5:AF (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    36793 1vy5:AG (2.55) BS01 rna ? GO:0000028 ... P17291 25132179
    36794 1vy5:AG (2.55) BS02 rna ? GO:0000028 ... P17291 25132179
    36795 1vy5:AH (2.55) BS01 rna ? GO:0003735 ... P0DOY9 25132179
    36796 1vy5:AI (2.55) BS01 rna ? GO:0000049 ... P80374 25132179
    36797 1vy5:AI (2.55) BS02 rna ? GO:0000049 ... P80374 25132179
    36798 1vy5:AJ (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    36799 1vy5:AK (2.55) BS01 rna ? GO:0003735 ... P80376 25132179
    36800 1vy5:AK (2.55) BS02 MG ? GO:0003735 ... P80376 25132179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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