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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    36401 1vrp:B (2.1) BS01 NO3 2.7.3.2 GO:0003824 ... P04414 12437342
    36402 1vrp:B (2.1) BS02 ADP 2.7.3.2 GO:0003824 ... P04414 12437342
    36403 1vrp:B (2.1) BS03 IOM 2.7.3.2 GO:0003824 ... P04414 12437342
    36404 1vrq:A (2.2) BS01 NAD 1.5.3.24 GO:0000166 ... Q50LF0 15946648
    36405 1vrq:A (2.2) BS02 FON 1.5.3.24 GO:0000166 ... Q50LF0 15946648
    36406 1vrq:A (2.2) BS03 FMN 1.5.3.24 GO:0000166 ... Q50LF0 15946648
    36407 1vrq:B (2.2) BS01 FAD 1.5.3.24 GO:0000166 ... Q50LF2 15946648
    36408 1vrq:B (2.2) BS02 FMN 1.5.3.24 GO:0000166 ... Q50LF2 15946648
    36409 1vrq:B (2.2) BS03 DMG 1.5.3.24 GO:0000166 ... Q50LF2 15946648
    36410 1vrq:D (2.2) BS01 ZN 1.5.3.24 GO:0005737 ... Q50LF1 15946648
    36411 1vso:A (1.85) BS01 AT1 ? GO:0015276 ... P22756 17581823 MOAD: Ki=18980nM
    PDBbind: -logKd/Ki=4.72, Ki=18.98uM
    BindingDB: Ki=2900nM
    36412 1vst:A (2.8) BS01 GTP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    36413 1vst:A (2.8) BS02 PRP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    36414 1vsv:A (2.0) BS01 NAD 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    36415 1vsv:B (2.0) BS01 NAD 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    36416 1vsv:C (2.0) BS01 NAD 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    36417 1vsv:D (2.0) BS01 NAD 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    36418 1vtl:E (2.25) BS01 dna ? GO:0003677 ... P28147 8413605
    36419 1vtl:E (2.25) BS02 dna ? GO:0003677 ... P28147 8413605
    36420 1vtl:F (2.25) BS01 dna ? GO:0003677 ... P28147 8413605
    36421 1vtl:F (2.25) BS02 dna ? GO:0003677 ... P28147 8413605
    36422 1vtm:P (3.5) BS01 rna ? GO:0019029 ... P03579 1453461
    36423 1vto:A (1.9) BS01 dna ? GO:0003677 ... P28147 7634103
    36424 1vto:A (1.9) BS02 dna ? GO:0003677 ... P28147 7634103
    36425 1vto:B (1.9) BS01 dna ? GO:0003677 ... P28147 7634103
    36426 1vto:B (1.9) BS02 dna ? GO:0003677 ... P28147 7634103
    36427 1vvj:QB (3.44) BS01 rna ? GO:0003735 ... P80371 25128388
    36428 1vvj:QC (3.44) BS01 rna ? GO:0003676 ... P80372 25128388
    36429 1vvj:QD (3.44) BS01 rna ? GO:0003723 ... P80373 25128388
    36430 1vvj:QD (3.44) BS02 ZN ? GO:0003723 ... P80373 25128388
    36431 1vvj:QE (3.44) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    36432 1vvj:QF (3.44) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    36433 1vvj:QF (3.44) BS02 MG ? GO:0003735 ... Q5SLP8 25128388
    36434 1vvj:QG (3.44) BS01 rna ? GO:0000028 ... P17291 25128388
    36435 1vvj:QH (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    36436 1vvj:QH (3.44) BS02 MG N/A GO:0003735 ... N/A 25128388
    36437 1vvj:QI (3.44) BS01 rna ? GO:0000049 ... P80374 25128388
    36438 1vvj:QI (3.44) BS02 rna ? GO:0000049 ... P80374 25128388
    36439 1vvj:QJ (3.44) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    36440 1vvj:QK (3.44) BS01 rna ? GO:0003735 ... P80376 25128388
    36441 1vvj:QL (3.44) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    36442 1vvj:QM (3.44) BS01 rna ? GO:0000049 ... P80377 25128388
    36443 1vvj:QM (3.44) BS02 rna ? GO:0000049 ... P80377 25128388
    36444 1vvj:QM (3.44) BS03 MG ? GO:0000049 ... P80377 25128388
    36445 1vvj:QN (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    36446 1vvj:QN (3.44) BS02 ZN N/A GO:0003735 ... N/A 25128388
    36447 1vvj:QO (3.44) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    36448 1vvj:QO (3.44) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    36449 1vvj:QP (3.44) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    36450 1vvj:QQ (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    36451 1vvj:QR (3.44) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    36452 1vvj:QS (3.44) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    36453 1vvj:QT (3.44) BS01 rna ? GO:0003723 ... P80380 25128388
    36454 1vvj:R0 (3.44) BS01 rna ? GO:0003735 ... P60493 25128388
    36455 1vvj:R0 (3.44) BS02 rna ? GO:0003735 ... P60493 25128388
    36456 1vvj:R0 (3.44) BS03 rna ? GO:0003735 ... P60493 25128388
    36457 1vvj:R1 (3.44) BS01 rna ? GO:0003735 ... P60494 25128388
    36458 1vvj:R2 (3.44) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    36459 1vvj:R3 (3.44) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    36460 1vvj:R3 (3.44) BS02 rna ? GO:0003735 ... Q5SHQ6 25128388
    36461 1vvj:R4 (3.44) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    36462 1vvj:R5 (3.44) BS01 rna ? GO:0003735 ... P80339 25128388
    36463 1vvj:R6 (3.44) BS01 rna ? GO:0000049 ... P35871 25128388
    36464 1vvj:R7 (3.44) BS01 rna ? GO:0003735 ... P80340 25128388
    36465 1vvj:R8 (3.44) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    36466 1vvj:RD (3.44) BS01 rna ? GO:0002181 ... P60405 25128388
    36467 1vvj:RD (3.44) BS02 rna ? GO:0002181 ... P60405 25128388
    36468 1vvj:RD (3.44) BS03 MG ? GO:0002181 ... P60405 25128388
    36469 1vvj:RE (3.44) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    36470 1vvj:RF (3.44) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    36471 1vvj:RG (3.44) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    36472 1vvj:RG (3.44) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    36473 1vvj:RH (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    36474 1vvj:RI (3.44) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    36475 1vvj:RN (3.44) BS01 rna ? GO:0003729 ... P60488 25128388
    36476 1vvj:RO (3.44) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    36477 1vvj:RO (3.44) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    36478 1vvj:RP (3.44) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    36479 1vvj:RQ (3.44) BS01 rna ? GO:0000049 ... P60489 25128388
    36480 1vvj:RR (3.44) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    36481 1vvj:RS (3.44) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    36482 1vvj:RS (3.44) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    36483 1vvj:RT (3.44) BS01 rna ? GO:0003735 ... P60490 25128388
    36484 1vvj:RT (3.44) BS02 rna ? GO:0003735 ... P60490 25128388
    36485 1vvj:RU (3.44) BS01 rna ? GO:0000027 ... P60491 25128388
    36486 1vvj:RV (3.44) BS01 rna ? GO:0003723 ... P60492 25128388
    36487 1vvj:RW (3.44) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    36488 1vvj:RX (3.44) BS01 rna ? GO:0000027 ... Q5SHP0 25128388
    36489 1vvj:RY (3.44) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    36490 1vvj:RZ (3.44) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    36491 1vvj:XB (3.44) BS01 rna ? GO:0003735 ... P80371 25128388
    36492 1vvj:XC (3.44) BS01 rna ? GO:0003676 ... P80372 25128388
    36493 1vvj:XD (3.44) BS01 rna ? GO:0003723 ... P80373 25128388
    36494 1vvj:XD (3.44) BS02 ZN ? GO:0003723 ... P80373 25128388
    36495 1vvj:XE (3.44) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    36496 1vvj:XF (3.44) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    36497 1vvj:XG (3.44) BS01 rna ? GO:0000028 ... P17291 25128388
    36498 1vvj:XH (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    36499 1vvj:XI (3.44) BS01 rna ? GO:0000049 ... P80374 25128388
    36500 1vvj:XI (3.44) BS02 rna ? GO:0000049 ... P80374 25128388
    36501 1vvj:XJ (3.44) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    36502 1vvj:XK (3.44) BS01 rna ? GO:0003735 ... P80376 25128388
    36503 1vvj:XL (3.44) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    36504 1vvj:XM (3.44) BS01 rna ? GO:0000049 ... P80377 25128388
    36505 1vvj:XM (3.44) BS02 rna ? GO:0000049 ... P80377 25128388
    36506 1vvj:XM (3.44) BS03 MG ? GO:0000049 ... P80377 25128388
    36507 1vvj:XN (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    36508 1vvj:XN (3.44) BS02 ZN N/A GO:0003735 ... N/A 25128388
    36509 1vvj:XO (3.44) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    36510 1vvj:XO (3.44) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    36511 1vvj:XP (3.44) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    36512 1vvj:XQ (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    36513 1vvj:XR (3.44) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    36514 1vvj:XS (3.44) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    36515 1vvj:XT (3.44) BS01 rna ? GO:0003723 ... P80380 25128388
    36516 1vvj:Y0 (3.44) BS01 rna ? GO:0003735 ... P60493 25128388
    36517 1vvj:Y0 (3.44) BS02 rna ? GO:0003735 ... P60493 25128388
    36518 1vvj:Y0 (3.44) BS03 rna ? GO:0003735 ... P60493 25128388
    36519 1vvj:Y1 (3.44) BS01 rna ? GO:0003735 ... P60494 25128388
    36520 1vvj:Y2 (3.44) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    36521 1vvj:Y3 (3.44) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    36522 1vvj:Y3 (3.44) BS02 rna ? GO:0003735 ... Q5SHQ6 25128388
    36523 1vvj:Y4 (3.44) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    36524 1vvj:Y5 (3.44) BS01 rna ? GO:0003735 ... P80339 25128388
    36525 1vvj:Y6 (3.44) BS01 rna ? GO:0000049 ... P35871 25128388
    36526 1vvj:Y7 (3.44) BS01 rna ? GO:0003735 ... P80340 25128388
    36527 1vvj:Y8 (3.44) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    36528 1vvj:YD (3.44) BS01 rna ? GO:0002181 ... P60405 25128388
    36529 1vvj:YD (3.44) BS02 MG ? GO:0002181 ... P60405 25128388
    36530 1vvj:YE (3.44) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    36531 1vvj:YF (3.44) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    36532 1vvj:YG (3.44) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    36533 1vvj:YG (3.44) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    36534 1vvj:YH (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    36535 1vvj:YI (3.44) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    36536 1vvj:YI (3.44) BS02 rna ? GO:0003735 ... Q5SLQ1 25128388
    36537 1vvj:YN (3.44) BS01 rna ? GO:0003729 ... P60488 25128388
    36538 1vvj:YO (3.44) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    36539 1vvj:YO (3.44) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    36540 1vvj:YP (3.44) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    36541 1vvj:YQ (3.44) BS01 rna ? GO:0000049 ... P60489 25128388
    36542 1vvj:YR (3.44) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    36543 1vvj:YS (3.44) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    36544 1vvj:YS (3.44) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    36545 1vvj:YT (3.44) BS01 rna ? GO:0003735 ... P60490 25128388
    36546 1vvj:YT (3.44) BS02 rna ? GO:0003735 ... P60490 25128388
    36547 1vvj:YU (3.44) BS01 rna ? GO:0000027 ... P60491 25128388
    36548 1vvj:YV (3.44) BS01 rna ? GO:0003723 ... P60492 25128388
    36549 1vvj:YW (3.44) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    36550 1vvj:YX (3.44) BS01 rna ? GO:0000027 ... Q5SHP0 25128388
    36551 1vvj:YY (3.44) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    36552 1vvj:YZ (3.44) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    36553 1vwt:A (1.9) BS01 HEM ? GO:0004601 ... P69905 9649306
    36554 1vwt:B (1.9) BS01 HEM ? GO:0004601 ... P68871 9649306
    36555 1vwt:C (1.9) BS01 HEM ? GO:0004601 ... P69905 9649306
    36556 1vwt:D (1.9) BS01 HEM ? GO:0004601 ... P68871 9649306
    36557 1vxa:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    36558 1vxb:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    36559 1vxc:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    36560 1vxd:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    36561 1vxe:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    36562 1vxf:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    36563 1vxg:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    36564 1vxh:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    36565 1vxo:A (2.4) BS01 VXA 3.1.1.7 GO:0001507 ... P04058 N/A
    36566 1vxr:A (2.2) BS01 VX 3.1.1.7 GO:0001507 ... P04058 N/A
    36567 1vy4:AB (2.6) BS01 rna ? GO:0003735 ... P80371 25132179
    36568 1vy4:AB (2.6) BS02 MG ? GO:0003735 ... P80371 25132179
    36569 1vy4:AC (2.6) BS01 rna ? GO:0003676 ... P80372 25132179
    36570 1vy4:AD (2.6) BS01 rna ? GO:0003723 ... P80373 25132179
    36571 1vy4:AD (2.6) BS02 SF4 ? GO:0003723 ... P80373 25132179
    36572 1vy4:AE (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    36573 1vy4:AE (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    36574 1vy4:AF (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    36575 1vy4:AG (2.6) BS01 rna ? GO:0000028 ... P17291 25132179
    36576 1vy4:AG (2.6) BS02 rna ? GO:0000028 ... P17291 25132179
    36577 1vy4:AH (2.6) BS01 rna ? GO:0003735 ... P0DOY9 25132179
    36578 1vy4:AI (2.6) BS01 rna ? GO:0000049 ... P80374 25132179
    36579 1vy4:AI (2.6) BS02 rna ? GO:0000049 ... P80374 25132179
    36580 1vy4:AJ (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    36581 1vy4:AK (2.6) BS01 rna ? GO:0003735 ... P80376 25132179
    36582 1vy4:AK (2.6) BS02 MG ? GO:0003735 ... P80376 25132179
    36583 1vy4:AL (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    36584 1vy4:AL (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    36585 1vy4:AM (2.6) BS01 rna ? GO:0000049 ... P80377 25132179
    36586 1vy4:AM (2.6) BS02 rna ? GO:0000049 ... P80377 25132179
    36587 1vy4:AM (2.6) BS03 rna ? GO:0000049 ... P80377 25132179
    36588 1vy4:AM (2.6) BS04 MG ? GO:0000049 ... P80377 25132179
    36589 1vy4:AN (2.6) BS01 rna ? GO:0003735 ... P0DOY6 25132179
    36590 1vy4:AN (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 25132179
    36591 1vy4:AO (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    36592 1vy4:AO (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    36593 1vy4:AP (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    36594 1vy4:AQ (2.6) BS01 rna ? GO:0003735 ... P0DOY7 25132179
    36595 1vy4:AR (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    36596 1vy4:AS (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    36597 1vy4:AT (2.6) BS01 rna ? GO:0003723 ... P80380 25132179
    36598 1vy4:AT (2.6) BS02 MG ? GO:0003723 ... P80380 25132179
    36599 1vy4:B0 (2.6) BS01 rna ? GO:0003735 ... P60493 25132179
    36600 1vy4:B0 (2.6) BS02 rna ? GO:0003735 ... P60493 25132179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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