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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    31601 1slx:B (2.2) BS02 ZN 3.4.21.4 GO:0004252 ... P00763 8634241
    31602 1sly:A (2.8) BS01 BLG 4.2.2.n1 GO:0000270 ... P0AGC3 7548026
    31603 1sm1:1 (3.42) BS01 rna ? GO:0000049 ... Q9RSS4 15059283
    31604 1sm1:A (3.42) BS01 rna ? GO:0002181 ... Q9RXJ9 15059283
    31605 1sm1:B (3.42) BS01 rna ? GO:0003735 ... Q9RXK2 15059283
    31606 1sm1:C (3.42) BS01 rna ? GO:0003735 ... Q9RXK1 15059283
    31607 1sm1:G (3.42) BS01 rna ? GO:0003735 ... Q9RSS7 15059283
    31608 1sm1:H (3.42) BS01 rna ? GO:0003729 ... Q9RXY1 15059283
    31609 1sm1:I (3.42) BS01 rna ? GO:0003735 ... Q9RXJ2 15059283
    31610 1sm1:J (3.42) BS01 rna ? GO:0003735 ... Q9RSK9 15059283
    31611 1sm1:L (3.42) BS01 rna ? GO:0003735 ... Q9RSJ5 15059283
    31612 1sm1:O (3.42) BS01 rna ? GO:0000027 ... Q9RSW7 15059283
    31613 1sm1:P (3.42) BS01 rna ? GO:0003723 ... Q9RY64 15059283
    31614 1sm1:Q (3.42) BS01 rna ? GO:0003735 ... Q9RXJ7 15059283
    31615 1sm1:S (3.42) BS01 rna ? GO:0003723 ... Q9RXJ1 15059283
    31616 1sm1:T (3.42) BS01 rna ? GO:0000049 ... Q9RX88 15059283
    31617 1sm1:X (3.42) BS01 rna ? GO:0003735 ... Q9RSL0 15059283
    31618 1sm1:Y (3.42) BS01 rna ? GO:0000049 ... Q9RW44 15059283
    31619 1sm1:Z (3.42) BS01 rna ? GO:0003735 ... P49228 15059283
    31620 1sm3:L (1.95) BS01 peptide ? GO:0002250 ... P01723 9826510
    31621 1sm9:A (2.2) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 15320875
    31622 1sm9:B (2.2) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 15320875
    31623 1sm9:C (2.2) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 15320875
    31624 1sm9:D (2.2) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 15320875
    31625 1smd:A (1.6) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 15299664
    31626 1smd:A (1.6) BS02 CL 3.2.1.1 GO:0003824 ... P0DUB6 15299664
    31627 1smf:E (2.1) BS01 peptide 3.4.21.4 GO:0004175 ... P00760 7798176
    31628 1smf:E (2.1) BS02 CA 3.4.21.4 GO:0004175 ... P00760 7798176
    31629 1smh:A (2.044) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 15196017
    31630 1smh:A (2.044) BS02 BU3 2.7.11.11 GO:0001669 ... P00517 15196017
    31631 1smh:A (2.044) BS03 BU3 2.7.11.11 GO:0001669 ... P00517 15196017
    31632 1smh:A (2.044) BS04 BU3 2.7.11.11 GO:0001669 ... P00517 15196017
    31633 1smh:A (2.044) BS05 MG8 2.7.11.11 GO:0001669 ... P00517 15196017
    31634 1sml:A (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 9811546
    31635 1sml:A (1.7) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 9811546
    31636 1smp:A (2.3) BS01 ZN 3.4.24.40 GO:0001907 ... P23694 7752231
    31637 1smp:A (2.3) BS02 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    31638 1smp:A (2.3) BS03 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    31639 1smp:A (2.3) BS04 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    31640 1smp:A (2.3) BS05 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    31641 1smp:A (2.3) BS06 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    31642 1smp:A (2.3) BS07 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    31643 1smp:A (2.3) BS08 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    31644 1smv:A (3.0) BS01 CA ? GO:0005198 ... Q9EB06 8589997
    31645 1smv:A (3.0) BS02 CA ? GO:0005198 ... Q9EB06 8589997
    31646 1smv:B (3.0) BS01 CA ? GO:0005198 ... Q9EB06 8589997
    31647 1smv:B (3.0) BS02 CA ? GO:0005198 ... Q9EB06 8589997
    31648 1smv:C (3.0) BS01 CA ? GO:0005198 ... Q9EB06 8589997
    31649 1smv:C (3.0) BS02 CA ? GO:0005198 ... Q9EB06 8589997
    31650 1smy:A (2.7) BS01 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    31651 1smy:A (2.7) BS02 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    31652 1smy:A (2.7) BS03 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    31653 1smy:A (2.7) BS04 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    31654 1smy:A (2.7) BS05 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    31655 1smy:B (2.7) BS01 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    31656 1smy:B (2.7) BS02 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    31657 1smy:B (2.7) BS03 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    31658 1smy:B (2.7) BS04 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    31659 1smy:B (2.7) BS05 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    31660 1smy:B (2.7) BS06 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    31661 1smy:B (2.7) BS07 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    31662 1smy:B (2.7) BS08 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    31663 1smy:B (2.7) BS09 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    31664 1smy:C (2.7) BS01 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31665 1smy:C (2.7) BS02 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31666 1smy:C (2.7) BS03 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31667 1smy:C (2.7) BS04 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31668 1smy:C (2.7) BS05 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31669 1smy:C (2.7) BS06 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31670 1smy:C (2.7) BS07 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31671 1smy:C (2.7) BS08 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31672 1smy:C (2.7) BS09 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31673 1smy:C (2.7) BS10 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31674 1smy:C (2.7) BS11 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31675 1smy:C (2.7) BS12 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31676 1smy:C (2.7) BS13 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31677 1smy:C (2.7) BS14 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31678 1smy:C (2.7) BS15 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31679 1smy:C (2.7) BS16 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31680 1smy:C (2.7) BS17 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31681 1smy:C (2.7) BS18 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31682 1smy:C (2.7) BS19 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31683 1smy:C (2.7) BS20 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31684 1smy:C (2.7) BS21 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31685 1smy:C (2.7) BS22 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31686 1smy:C (2.7) BS23 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31687 1smy:C (2.7) BS24 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31688 1smy:C (2.7) BS25 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31689 1smy:C (2.7) BS26 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31690 1smy:C (2.7) BS27 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31691 1smy:C (2.7) BS28 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31692 1smy:C (2.7) BS29 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31693 1smy:C (2.7) BS30 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31694 1smy:C (2.7) BS31 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31695 1smy:C (2.7) BS32 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31696 1smy:C (2.7) BS33 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31697 1smy:C (2.7) BS34 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31698 1smy:C (2.7) BS35 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31699 1smy:C (2.7) BS36 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31700 1smy:D (2.7) BS01 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31701 1smy:D (2.7) BS02 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31702 1smy:D (2.7) BS03 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31703 1smy:D (2.7) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31704 1smy:D (2.7) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31705 1smy:D (2.7) BS06 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31706 1smy:D (2.7) BS07 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31707 1smy:D (2.7) BS08 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31708 1smy:D (2.7) BS09 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31709 1smy:D (2.7) BS10 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31710 1smy:D (2.7) BS11 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31711 1smy:D (2.7) BS12 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31712 1smy:D (2.7) BS13 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31713 1smy:D (2.7) BS14 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31714 1smy:D (2.7) BS15 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31715 1smy:D (2.7) BS16 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31716 1smy:D (2.7) BS17 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31717 1smy:D (2.7) BS18 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31718 1smy:D (2.7) BS19 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31719 1smy:D (2.7) BS20 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31720 1smy:D (2.7) BS21 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31721 1smy:D (2.7) BS22 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31722 1smy:D (2.7) BS23 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31723 1smy:D (2.7) BS24 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31724 1smy:D (2.7) BS25 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31725 1smy:D (2.7) BS26 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31726 1smy:D (2.7) BS27 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31727 1smy:D (2.7) BS28 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31728 1smy:D (2.7) BS29 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31729 1smy:D (2.7) BS30 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31730 1smy:D (2.7) BS31 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31731 1smy:D (2.7) BS32 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31732 1smy:D (2.7) BS33 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31733 1smy:D (2.7) BS34 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31734 1smy:D (2.7) BS35 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31735 1smy:D (2.7) BS36 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31736 1smy:D (2.7) BS37 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31737 1smy:D (2.7) BS38 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31738 1smy:D (2.7) BS39 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31739 1smy:D (2.7) BS40 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31740 1smy:D (2.7) BS41 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31741 1smy:D (2.7) BS42 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31742 1smy:D (2.7) BS43 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31743 1smy:D (2.7) BS44 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31744 1smy:D (2.7) BS45 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31745 1smy:D (2.7) BS46 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31746 1smy:D (2.7) BS47 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31747 1smy:D (2.7) BS48 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31748 1smy:D (2.7) BS49 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31749 1smy:D (2.7) BS50 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31750 1smy:D (2.7) BS51 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31751 1smy:D (2.7) BS52 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31752 1smy:D (2.7) BS53 G4P 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31753 1smy:E (2.7) BS01 MG 2.7.7.6 GO:0000428 ... Q8RQE7 15109491
    31754 1smy:E (2.7) BS02 MG 2.7.7.6 GO:0000428 ... Q8RQE7 15109491
    31755 1smy:E (2.7) BS03 MG 2.7.7.6 GO:0000428 ... Q8RQE7 15109491
    31756 1smy:F (2.7) BS01 MG ? GO:0003677 ... Q72L95 15109491
    31757 1smy:F (2.7) BS02 MG ? GO:0003677 ... Q72L95 15109491
    31758 1smy:F (2.7) BS03 MG ? GO:0003677 ... Q72L95 15109491
    31759 1smy:F (2.7) BS04 MG ? GO:0003677 ... Q72L95 15109491
    31760 1smy:F (2.7) BS05 MG ? GO:0003677 ... Q72L95 15109491
    31761 1smy:F (2.7) BS06 MG ? GO:0003677 ... Q72L95 15109491
    31762 1smy:F (2.7) BS07 MG ? GO:0003677 ... Q72L95 15109491
    31763 1smy:F (2.7) BS08 MG ? GO:0003677 ... Q72L95 15109491
    31764 1smy:F (2.7) BS09 MG ? GO:0003677 ... Q72L95 15109491
    31765 1smy:F (2.7) BS10 MG ? GO:0003677 ... Q72L95 15109491
    31766 1smy:F (2.7) BS11 MG ? GO:0003677 ... Q72L95 15109491
    31767 1smy:F (2.7) BS12 MG ? GO:0003677 ... Q72L95 15109491
    31768 1smy:F (2.7) BS13 MG ? GO:0003677 ... Q72L95 15109491
    31769 1smy:F (2.7) BS14 MG ? GO:0003677 ... Q72L95 15109491
    31770 1smy:M (2.7) BS01 G4P 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31771 1smy:N (2.7) BS01 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31772 1smy:N (2.7) BS02 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31773 1smy:N (2.7) BS03 G4P 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    31774 1sn0:A (1.9) BS01 T44 ? GO:0005179 ... Q9PTT3 15082720
    31775 1sn0:B (1.9) BS01 T44 ? GO:0005179 ... Q9PTT3 15082720
    31776 1sn0:C (1.9) BS01 T44 ? GO:0005179 ... Q9PTT3 15082720
    31777 1sn0:D (1.9) BS01 T44 ? GO:0005179 ... Q9PTT3 15082720
    31778 1sn5:B (1.9) BS01 T3 ? GO:0005179 ... Q9PTT3 15082720
    31779 1sn5:C (1.9) BS01 T3 ? GO:0005179 ... Q9PTT3 15082720
    31780 1sn5:D (1.9) BS01 T3 ? GO:0005179 ... Q9PTT3 15082720
    31781 1snn:A (1.55) BS01 5RP 4.1.99.12 GO:0000287 ... Q60364 15213409
    31782 1snn:A (1.55) BS02 ZN 4.1.99.12 GO:0000287 ... Q60364 15213409
    31783 1snn:A (1.55) BS03 CA 4.1.99.12 GO:0000287 ... Q60364 15213409
    31784 1snn:A (1.55) BS04 CA 4.1.99.12 GO:0000287 ... Q60364 15213409
    31785 1snn:A (1.55) BS05 CA 4.1.99.12 GO:0000287 ... Q60364 15213409
    31786 1snn:B (1.55) BS01 5RP 4.1.99.12 GO:0000287 ... Q60364 15213409
    31787 1snn:B (1.55) BS02 ZN 4.1.99.12 GO:0000287 ... Q60364 15213409
    31788 1snr:A (1.31) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 15131305
    31789 1snr:A (1.31) BS02 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    31790 1snr:A (1.31) BS03 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    31791 1snr:A (1.31) BS04 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    31792 1snr:B (1.31) BS01 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    31793 1snr:B (1.31) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 15131305
    31794 1snr:B (1.31) BS03 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    31795 1snr:B (1.31) BS04 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    31796 1snr:C (1.31) BS01 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    31797 1snr:C (1.31) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 15131305
    31798 1snr:C (1.31) BS03 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    31799 1snr:C (1.31) BS04 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    31800 1sny:A (1.75) BS01 NAP 1.1.1.184 GO:0000166 ... Q9W3H4 15364585

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218