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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    29201 1rco:B (2.3) BS02 XDP 4.1.1.39 GO:0000287 ... P00875 8955130
    29202 1rco:E (2.3) BS01 XDP 4.1.1.39 GO:0000287 ... P00875 8955130
    29203 1rco:E (2.3) BS02 XDP 4.1.1.39 GO:0000287 ... P00875 8955130
    29204 1rco:H (2.3) BS01 XDP 4.1.1.39 GO:0000287 ... P00875 8955130
    29205 1rco:H (2.3) BS02 XDP 4.1.1.39 GO:0000287 ... P00875 8955130
    29206 1rco:K (2.3) BS01 XDP 4.1.1.39 GO:0000287 ... P00875 8955130
    29207 1rco:K (2.3) BS02 XDP 4.1.1.39 GO:0000287 ... P00875 8955130
    29208 1rco:L (2.3) BS01 XDP 4.1.1.39 GO:0000287 ... P00875 8955130
    29209 1rco:L (2.3) BS02 XDP 4.1.1.39 GO:0000287 ... P00875 8955130
    29210 1rco:O (2.3) BS01 XDP 4.1.1.39 GO:0000287 ... P00875 8955130
    29211 1rco:O (2.3) BS02 XDP 4.1.1.39 GO:0000287 ... P00875 8955130
    29212 1rco:R (2.3) BS01 XDP 4.1.1.39 GO:0000287 ... P00875 8955130
    29213 1rco:V (2.3) BS01 XDP 4.1.1.39 GO:0000287 ... P00875 8955130
    29214 1rco:V (2.3) BS02 XDP 4.1.1.39 GO:0000287 ... P00875 8955130
    29215 1rcp:A (2.0) BS01 HEM ? GO:0005506 ... P00147 8676382
    29216 1rcp:B (2.0) BS01 HEM ? GO:0005506 ... P00147 8676382
    29217 1rcq:A (1.45) BS01 PLP 5.1.1.1 GO:0003824 ... Q9HTQ2 14674749
    29218 1rcq:A (1.45) BS02 DLY 5.1.1.1 GO:0003824 ... Q9HTQ2 14674749
    29219 1rcs:A (-1.00) BS01 dna ? GO:0003677 ... P0A881 8176748
    29220 1rcs:A (-1.00) BS02 dna ? GO:0003677 ... P0A881 8176748
    29221 1rcs:A (-1.00) BS03 TRP ? GO:0003677 ... P0A881 8176748
    29222 1rcs:B (-1.00) BS01 dna ? GO:0003677 ... P0A881 8176748
    29223 1rcs:B (-1.00) BS02 dna ? GO:0003677 ... P0A881 8176748
    29224 1rcs:B (-1.00) BS03 TRP ? GO:0003677 ... P0A881 8176748
    29225 1rct:E (2.8) BS01 NOS 2.4.2.1 GO:0000255 ... P00491 14706628
    29226 1rcv:D (1.6) BS01 BV1 ? GO:0005515 ... P01556 15380181 MOAD: ic50=29uM
    29227 1rcv:E (1.6) BS01 BV1 ? GO:0005515 ... P01556 15380181 MOAD: ic50=29uM
    29228 1rcv:F (1.6) BS01 BV1 ? GO:0005515 ... P01556 15380181 MOAD: ic50=29uM
    29229 1rcv:F (1.6) BS02 BV1 ? GO:0005515 ... P01556 15380181 MOAD: ic50=29uM
    29230 1rcv:G (1.6) BS01 BV1 ? GO:0005515 ... P01556 15380181 MOAD: ic50=29uM
    29231 1rcv:H (1.6) BS01 BV1 ? GO:0005515 ... P01556 15380181 MOAD: ic50=29uM
    29232 1rcw:A (2.5) BS01 FE 1.3.3.- GO:0005576 ... O84616 15087448
    29233 1rcw:A (2.5) BS02 FE 1.3.3.- GO:0005576 ... O84616 15087448
    29234 1rcw:B (2.5) BS01 FE 1.3.3.- GO:0005576 ... O84616 15087448
    29235 1rcw:B (2.5) BS02 FE 1.3.3.- GO:0005576 ... O84616 15087448
    29236 1rcw:C (2.5) BS01 FE 1.3.3.- GO:0005576 ... O84616 15087448
    29237 1rcw:C (2.5) BS02 FE 1.3.3.- GO:0005576 ... O84616 15087448
    29238 1rcx:B (2.4) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    29239 1rcx:B (2.4) BS02 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    29240 1rcx:E (2.4) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    29241 1rcx:E (2.4) BS02 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    29242 1rcx:H (2.4) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    29243 1rcx:H (2.4) BS02 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    29244 1rcx:K (2.4) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    29245 1rcx:K (2.4) BS02 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    29246 1rcx:L (2.4) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    29247 1rcx:L (2.4) BS02 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    29248 1rcx:O (2.4) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    29249 1rcx:O (2.4) BS02 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    29250 1rcx:R (2.4) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    29251 1rcx:R (2.4) BS02 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    29252 1rcx:V (2.4) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    29253 1rcx:V (2.4) BS02 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    29254 1rcy:A (1.9) BS01 CU ? GO:0005507 ... P0C918 8947572
    29255 1rd9:D (1.44) BS01 BV2 ? GO:0005515 ... P01556 15380181 MOAD: ic50=13uM
    29256 1rd9:D (1.44) BS02 BV2 ? GO:0005515 ... P01556 15380181 MOAD: ic50=13uM
    29257 1rd9:E (1.44) BS01 BV2 ? GO:0005515 ... P01556 15380181 MOAD: ic50=13uM
    29258 1rd9:F (1.44) BS01 BV2 ? GO:0005515 ... P01556 15380181 MOAD: ic50=13uM
    29259 1rd9:F (1.44) BS02 BV2 ? GO:0005515 ... P01556 15380181 MOAD: ic50=13uM
    29260 1rd9:G (1.44) BS01 BV2 ? GO:0005515 ... P01556 15380181 MOAD: ic50=13uM
    29261 1rd9:H (1.44) BS01 BV2 ? GO:0005515 ... P01556 15380181 MOAD: ic50=13uM
    29262 1rdd:A (2.8) BS01 MG 3.1.26.4 GO:0000287 ... P0A7Y4 8108376
    29263 1rdg:A (1.4) BS01 FE ? GO:0005506 ... P00270 3441010
    29264 1rdp:D (1.35) BS01 BV3 ? GO:0005515 ... P01556 15380181 MOAD: ic50=9uM
    29265 1rdp:E (1.35) BS01 BV3 ? GO:0005515 ... P01556 15380181 MOAD: ic50=9uM
    29266 1rdp:F (1.35) BS01 BV3 ? GO:0005515 ... P01556 15380181 MOAD: ic50=9uM
    29267 1rdp:G (1.35) BS01 BV3 ? GO:0005515 ... P01556 15380181 MOAD: ic50=9uM
    29268 1rdp:H (1.35) BS01 BV3 ? GO:0005515 ... P01556 15380181 MOAD: ic50=9uM
    29269 1rdq:E (1.26) BS01 peptide 2.7.11.11 GO:0000122 ... P05132 14757059
    29270 1rdq:E (1.26) BS02 MG 2.7.11.11 GO:0000122 ... P05132 14757059
    29271 1rdq:E (1.26) BS03 ADP 2.7.11.11 GO:0000122 ... P05132 14757059
    29272 1rdq:E (1.26) BS04 ATP 2.7.11.11 GO:0000122 ... P05132 14757059
    29273 1rdt:A (2.4) BS01 peptide ? GO:0003677 ... P19793 15056000
    29274 1rdt:A (2.4) BS02 L79 ? GO:0003677 ... P19793 15056000 MOAD: Ki=6nM
    PDBbind: -logKd/Ki=6.70, Ki=200nM
    29275 1rdt:D (2.4) BS01 peptide ? GO:0003677 ... P37231 15056000
    29276 1rdt:D (2.4) BS02 570 ? GO:0003677 ... P37231 15056000 BindingDB: Ki=1.1nM, EC50=0.338844nM, IC50=25nM
    29277 1rdv:A (2.0) BS01 FE ? GO:0005506 ... P15412 10089348
    29278 1rdw:X (2.3) BS01 ATP 3.6.4.- GO:0000287 ... P68135 15099571
    29279 1rdw:X (2.3) BS02 LAR 3.6.4.- GO:0000287 ... P68135 15099571
    29280 1rdx:A (2.75) BS01 F6P 3.1.3.11 GO:0005737 ... P00636 8844845
    29281 1rdx:B (2.75) BS01 F6P 3.1.3.11 GO:0005737 ... P00636 8844845
    29282 1rdy:A (2.2) BS01 F6P 3.1.3.11 GO:0005737 ... P00636 8844845
    29283 1rdy:A (2.2) BS02 AMP 3.1.3.11 GO:0005737 ... P00636 8844845 BindingDB: IC50=1300nM
    29284 1rdy:B (2.2) BS01 F6P 3.1.3.11 GO:0005737 ... P00636 8844845
    29285 1rdy:B (2.2) BS02 AMP 3.1.3.11 GO:0005737 ... P00636 8844845 BindingDB: IC50=1300nM
    29286 1rdz:A (2.05) BS01 F6P 3.1.3.11 GO:0005737 ... P00636 8844845
    29287 1rdz:A (2.05) BS02 AMP 3.1.3.11 GO:0005737 ... P00636 8844845 BindingDB: IC50=1300nM
    29288 1rdz:B (2.05) BS01 F6P 3.1.3.11 GO:0005737 ... P00636 8844845
    29289 1rdz:B (2.05) BS02 AMP 3.1.3.11 GO:0005737 ... P00636 8844845 BindingDB: IC50=1300nM
    29290 1re0:A (2.4) BS01 GDP 3.6.5.2 GO:0000139 ... P84077 14690595
    29291 1re0:A (2.4) BS02 AFB 3.6.5.2 GO:0000139 ... P84077 14690595
    29292 1re2:A (2.3) BS01 GAL 3.2.1.17 GO:0003796 ... P61626 9888793
    29293 1re3:B (2.45) BS01 CA ? GO:0005102 ... P02675 14992584
    29294 1re3:C (2.45) BS01 peptide ? GO:0005102 ... P02679 14992584
    29295 1re3:C (2.45) BS02 CA ? GO:0005102 ... P02679 14992584
    29296 1re3:C (2.45) BS03 CA ? GO:0005102 ... P02679 14992584
    29297 1re3:E (2.45) BS01 CA ? GO:0005102 ... P02675 14992584
    29298 1re3:F (2.45) BS01 peptide ? GO:0005102 ... P02679 14992584
    29299 1re3:F (2.45) BS02 CA ? GO:0005102 ... P02679 14992584
    29300 1re4:B (2.7) BS01 CA ? GO:0005102 ... P02675 14992584
    29301 1re4:B (2.7) BS02 CA ? GO:0005102 ... P02675 14992584
    29302 1re4:C (2.7) BS01 CA ? GO:0005102 ... P02679 14992584
    29303 1re4:C (2.7) BS02 CA ? GO:0005102 ... P02679 14992584
    29304 1re4:E (2.7) BS01 CA ? GO:0005102 ... P02675 14992584
    29305 1re4:F (2.7) BS01 CA ? GO:0005102 ... P02679 14992584
    29306 1re4:F (2.7) BS02 CA ? GO:0005102 ... P02679 14992584
    29307 1re8:A (2.1) BS01 BD2 2.7.11.11 GO:0000122 ... P05132 14705934 MOAD: Ki=0.3nM
    PDBbind: -logKd/Ki=9.52, Ki=0.3nM
    29308 1re9:A (1.45) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 15522298
    29309 1re9:A (1.45) BS02 DSO 1.14.15.1 GO:0004497 ... P00183 15522298 MOAD: Kd~0.02uM
    29310 1rea:A (2.7) BS01 ADP ? GO:0000725 ... P0A7G6 1731253
    29311 1rec:A (1.9) BS01 CA ? GO:0001750 ... P21457 8242744
    29312 1red:B (1.6) BS01 C5X 3.2.1.8 GO:0004553 ... P36217 8755744
    29313 1ree:B (1.6) BS01 07E 3.2.1.8 GO:0004553 ... P36217 8755744
    29314 1ref:B (1.8) BS01 C3X 3.2.1.8 GO:0004553 ... P36217 8755744
    29315 1rej:A (2.2) BS01 B1L 2.7.11.11 GO:0000122 ... P05132 14705934 MOAD: Ki=5nM
    PDBbind: -logKd/Ki=8.30, Ki=5nM
    29316 1rek:A (2.3) BS01 B8L 2.7.11.11 GO:0000122 ... P05132 14705934 MOAD: Ki=200nM
    PDBbind: -logKd/Ki=6.70, Ki=200nM
    29317 1rek:A (2.3) BS02 PTL 2.7.11.11 GO:0000122 ... P05132 14705934
    29318 1rem:A (2.1) BS01 BMA 3.2.1.17 GO:0003796 ... P61626 9757098
    29319 1reo:A (2.31) BS01 FAD 1.4.3.2 GO:0001716 ... Q6STF1 15103157
    29320 1req:A (2.0) BS01 B12 5.4.99.2 GO:0003824 ... P11653 8805541
    29321 1req:A (2.0) BS02 DCA 5.4.99.2 GO:0003824 ... P11653 8805541
    29322 1req:C (2.0) BS01 B12 5.4.99.2 GO:0003824 ... P11653 8805541
    29323 1req:C (2.0) BS02 DCA 5.4.99.2 GO:0003824 ... P11653 8805541
    29324 1req:D (2.0) BS01 DCA 5.4.99.2 GO:0003824 ... P11652 8805541
    29325 1rez:A (1.7) BS01 GAL 3.2.1.17 GO:0003796 ... P61626 8885835
    29326 1rf0:B (2.81) BS01 CA ? GO:0005102 ... P02675 14992585
    29327 1rf0:B (2.81) BS02 CA ? GO:0005102 ... P02675 14992585
    29328 1rf0:C (2.81) BS01 CA ? GO:0005102 ... P02679 14992585
    29329 1rf0:E (2.81) BS01 CA ? GO:0005102 ... P02675 14992585
    29330 1rf0:E (2.81) BS02 CA ? GO:0005102 ... P02675 14992585
    29331 1rf0:F (2.81) BS01 CA ? GO:0005102 ... P02679 14992585
    29332 1rf1:B (2.53) BS01 peptide ? GO:0005102 ... P02675 14992585
    29333 1rf1:B (2.53) BS02 CA ? GO:0005102 ... P02675 14992585
    29334 1rf1:C (2.53) BS01 peptide ? GO:0005102 ... P02679 14992585
    29335 1rf1:C (2.53) BS02 CA ? GO:0005102 ... P02679 14992585
    29336 1rf1:E (2.53) BS01 peptide ? GO:0005102 ... P02675 14992585
    29337 1rf1:E (2.53) BS02 CA ? GO:0005102 ... P02675 14992585
    29338 1rf1:F (2.53) BS01 peptide ? GO:0005102 ... P02679 14992585
    29339 1rf1:F (2.53) BS02 CA ? GO:0005102 ... P02679 14992585
    29340 1rf2:D (1.35) BS01 BV4 ? GO:0005515 ... P01556 15380181 MOAD: ic50=17uM
    29341 1rf2:E (1.35) BS01 BV4 ? GO:0005515 ... P01556 15380181 MOAD: ic50=17uM
    29342 1rf2:F (1.35) BS01 BV4 ? GO:0005515 ... P01556 15380181 MOAD: ic50=17uM
    29343 1rf2:G (1.35) BS01 BV4 ? GO:0005515 ... P01556 15380181 MOAD: ic50=17uM
    29344 1rf2:H (1.35) BS01 BV4 ? GO:0005515 ... P01556 15380181 MOAD: ic50=17uM
    29345 1rf4:A (2.2) BS01 SPQ 2.5.1.19 GO:0003824 ... Q9S400 14763973
    29346 1rf4:B (2.2) BS01 SPQ 2.5.1.19 GO:0003824 ... Q9S400 14763973
    29347 1rf4:C (2.2) BS01 SPQ 2.5.1.19 GO:0003824 ... Q9S400 14763973
    29348 1rf4:D (2.2) BS01 SPQ 2.5.1.19 GO:0003824 ... Q9S400 14763973
    29349 1rf6:A (1.9) BS01 GPJ 2.5.1.19 GO:0003824 ... Q9S400 14763973
    29350 1rf6:A (1.9) BS02 S3P 2.5.1.19 GO:0003824 ... Q9S400 14763973
    29351 1rf6:B (1.9) BS01 GPJ 2.5.1.19 GO:0003824 ... Q9S400 14763973
    29352 1rf6:B (1.9) BS02 S3P 2.5.1.19 GO:0003824 ... Q9S400 14763973
    29353 1rf6:C (1.9) BS01 GPJ 2.5.1.19 GO:0003824 ... Q9S400 14763973
    29354 1rf6:C (1.9) BS02 S3P 2.5.1.19 GO:0003824 ... Q9S400 14763973
    29355 1rf6:D (1.9) BS01 GPJ 2.5.1.19 GO:0003824 ... Q9S400 14763973
    29356 1rf6:D (1.9) BS02 S3P 2.5.1.19 GO:0003824 ... Q9S400 14763973
    29357 1rf7:A (1.8) BS01 DHF 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    29358 1rf7:A (1.8) BS02 DHF 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    29359 1rf8:A (-1.00) BS01 MTN ? GO:0000184 ... P07260 14675538
    29360 1rf8:A (-1.00) BS02 MTN ? GO:0000184 ... P07260 14675538
    29361 1rf8:A (-1.00) BS03 M7G ? GO:0000184 ... P07260 14675538
    29362 1rf9:A (1.8) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 15522298
    29363 1rf9:A (1.8) BS02 DBR 1.14.15.1 GO:0004497 ... P00183 15522298
    29364 1rff:A (1.7) BS01 dna 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    29365 1rff:A (1.7) BS02 peptide 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    29366 1rff:A (1.7) BS03 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    29367 1rff:B (1.7) BS01 dna 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    29368 1rff:B (1.7) BS02 peptide 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    29369 1rff:B (1.7) BS03 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    29370 1rfg:E (2.9) BS01 GMP 2.4.2.1 GO:0000255 ... P00491 15983407
    29371 1rfi:A (2.2) BS01 dna 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    29372 1rfi:A (2.2) BS02 peptide 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    29373 1rfi:A (2.2) BS03 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    29374 1rfi:B (2.2) BS01 dna 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    29375 1rfi:B (2.2) BS02 peptide 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    29376 1rfi:B (2.2) BS03 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    29377 1rfq:A (3.0) BS01 ATP 3.6.4.- GO:0000287 ... P68135 15099571
    29378 1rfq:A (3.0) BS02 LAR 3.6.4.- GO:0000287 ... P68135 15099571
    29379 1rfq:B (3.0) BS01 MG 3.6.4.- GO:0000287 ... P68135 15099571
    29380 1rfq:B (3.0) BS02 ATP 3.6.4.- GO:0000287 ... P68135 15099571
    29381 1rfq:B (3.0) BS03 LAR 3.6.4.- GO:0000287 ... P68135 15099571
    29382 1rfs:A (1.83) BS01 FES 7.1.1.6 GO:0016020 ... P08980 9438861
    29383 1rft:A (2.8) BS01 ACP 2.7.1.35 GO:0005524 ... P82197 14722069
    29384 1rft:A (2.8) BS02 PXM 2.7.1.35 GO:0005524 ... P82197 14722069
    29385 1rfu:A (2.8) BS01 PLP 2.7.1.35 GO:0005524 ... P82197 14722069
    29386 1rfu:A (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    29387 1rfu:B (2.8) BS01 PLP 2.7.1.35 GO:0005524 ... P82197 14722069
    29388 1rfu:B (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    29389 1rfu:C (2.8) BS01 PLP 2.7.1.35 GO:0005524 ... P82197 14722069
    29390 1rfu:C (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    29391 1rfu:D (2.8) BS01 PLP 2.7.1.35 GO:0005524 ... P82197 14722069
    29392 1rfu:D (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    29393 1rfu:E (2.8) BS01 PLP 2.7.1.35 GO:0005524 ... P82197 14722069
    29394 1rfu:E (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    29395 1rfu:F (2.8) BS01 PLP 2.7.1.35 GO:0005524 ... P82197 14722069
    29396 1rfu:F (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    29397 1rfu:G (2.8) BS01 PLP 2.7.1.35 GO:0005524 ... P82197 14722069
    29398 1rfu:G (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    29399 1rfu:H (2.8) BS01 PLP 2.7.1.35 GO:0005524 ... P82197 14722069
    29400 1rfu:H (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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