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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    15201 1gt7:S (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    15202 1gt7:S (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    15203 1gt7:T (2.7) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 11976494
    15204 1gt7:T (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    15205 1gt8:A (3.3) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15206 1gt8:A (3.3) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15207 1gt8:A (3.3) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15208 1gt8:A (3.3) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15209 1gt8:A (3.3) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    15210 1gt8:A (3.3) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    15211 1gt8:A (3.3) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    15212 1gt8:A (3.3) BS08 UAA 1.3.1.2 GO:0000166 ... Q28943 11796730
    15213 1gt8:B (3.3) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15214 1gt8:B (3.3) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15215 1gt8:B (3.3) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15216 1gt8:B (3.3) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15217 1gt8:B (3.3) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    15218 1gt8:B (3.3) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    15219 1gt8:B (3.3) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    15220 1gt8:B (3.3) BS08 UAA 1.3.1.2 GO:0000166 ... Q28943 11796730
    15221 1gt8:C (3.3) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15222 1gt8:C (3.3) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15223 1gt8:C (3.3) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15224 1gt8:C (3.3) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15225 1gt8:C (3.3) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    15226 1gt8:C (3.3) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    15227 1gt8:C (3.3) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    15228 1gt8:C (3.3) BS08 UAA 1.3.1.2 GO:0000166 ... Q28943 11796730
    15229 1gt8:D (3.3) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15230 1gt8:D (3.3) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15231 1gt8:D (3.3) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15232 1gt8:D (3.3) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15233 1gt8:D (3.3) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    15234 1gt8:D (3.3) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    15235 1gt8:D (3.3) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    15236 1gt8:D (3.3) BS08 UAA 1.3.1.2 GO:0000166 ... Q28943 11796730
    15237 1gt9:1 (1.38) BS01 CA ? GO:0004252 ... Q8RR56 12057200
    15238 1gt9:2 (1.38) BS01 CA ? GO:0004252 ... Q8RR56 12057200
    15239 1gtb:A (2.6) BS01 PZQ 2.5.1.18 GO:0004364 ... P08515 7853399
    15240 1gte:A (1.65) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15241 1gte:A (1.65) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15242 1gte:A (1.65) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15243 1gte:A (1.65) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15244 1gte:A (1.65) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    15245 1gte:A (1.65) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    15246 1gte:A (1.65) BS07 IUR 1.3.1.2 GO:0000166 ... Q28943 11796730
    15247 1gte:B (1.65) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15248 1gte:B (1.65) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15249 1gte:B (1.65) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15250 1gte:B (1.65) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15251 1gte:B (1.65) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    15252 1gte:B (1.65) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    15253 1gte:B (1.65) BS07 IUR 1.3.1.2 GO:0000166 ... Q28943 11796730
    15254 1gte:C (1.65) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15255 1gte:C (1.65) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15256 1gte:C (1.65) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15257 1gte:C (1.65) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15258 1gte:C (1.65) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    15259 1gte:C (1.65) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    15260 1gte:C (1.65) BS07 IUR 1.3.1.2 GO:0000166 ... Q28943 11796730
    15261 1gte:D (1.65) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15262 1gte:D (1.65) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15263 1gte:D (1.65) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15264 1gte:D (1.65) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15265 1gte:D (1.65) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    15266 1gte:D (1.65) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    15267 1gte:D (1.65) BS07 IUR 1.3.1.2 GO:0000166 ... Q28943 11796730
    15268 1gtf:A (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15269 1gtf:A (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15270 1gtf:B (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15271 1gtf:B (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15272 1gtf:C (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15273 1gtf:C (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15274 1gtf:D (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15275 1gtf:D (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15276 1gtf:E (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15277 1gtf:E (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15278 1gtf:F (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15279 1gtf:F (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15280 1gtf:G (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15281 1gtf:G (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15282 1gtf:H (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15283 1gtf:H (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15284 1gtf:I (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15285 1gtf:I (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15286 1gtf:J (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15287 1gtf:J (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15288 1gtf:K (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15289 1gtf:K (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15290 1gtf:L (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    15291 1gtf:L (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15292 1gtf:L (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15293 1gtf:M (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    15294 1gtf:M (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15295 1gtf:M (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15296 1gtf:N (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    15297 1gtf:N (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15298 1gtf:N (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15299 1gtf:O (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    15300 1gtf:O (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15301 1gtf:O (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15302 1gtf:P (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    15303 1gtf:P (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15304 1gtf:P (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15305 1gtf:Q (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    15306 1gtf:Q (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15307 1gtf:Q (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15308 1gtf:R (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    15309 1gtf:R (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15310 1gtf:R (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15311 1gtf:S (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    15312 1gtf:S (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15313 1gtf:S (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15314 1gtf:T (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    15315 1gtf:T (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15316 1gtf:T (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15317 1gtf:U (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    15318 1gtf:U (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15319 1gtf:U (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15320 1gtf:V (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    15321 1gtf:V (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15322 1gtf:V (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15323 1gtg:1 (2.3) BS01 CA ? GO:0004252 ... Q8RR56 12057200
    15324 1gth:A (2.25) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15325 1gth:A (2.25) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15326 1gth:A (2.25) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15327 1gth:A (2.25) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15328 1gth:A (2.25) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    15329 1gth:A (2.25) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    15330 1gth:A (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    15331 1gth:A (2.25) BS08 IDH 1.3.1.2 GO:0000166 ... Q28943 11796730
    15332 1gth:B (2.25) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15333 1gth:B (2.25) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15334 1gth:B (2.25) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15335 1gth:B (2.25) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15336 1gth:B (2.25) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    15337 1gth:B (2.25) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    15338 1gth:B (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    15339 1gth:B (2.25) BS08 IDH 1.3.1.2 GO:0000166 ... Q28943 11796730
    15340 1gth:C (2.25) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15341 1gth:C (2.25) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15342 1gth:C (2.25) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15343 1gth:C (2.25) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15344 1gth:C (2.25) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    15345 1gth:C (2.25) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    15346 1gth:C (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    15347 1gth:C (2.25) BS08 IUR 1.3.1.2 GO:0000166 ... Q28943 11796730
    15348 1gth:D (2.25) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15349 1gth:D (2.25) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15350 1gth:D (2.25) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15351 1gth:D (2.25) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    15352 1gth:D (2.25) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    15353 1gth:D (2.25) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    15354 1gth:D (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    15355 1gth:D (2.25) BS08 URA 1.3.1.2 GO:0000166 ... Q28943 11796730
    15356 1gti:A (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    15357 1gti:B (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    15358 1gti:C (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    15359 1gti:D (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    15360 1gti:E (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    15361 1gti:F (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    15362 1gtj:1 (1.75) BS01 peptide ? GO:0004252 ... Q8RR56 12057200
    15363 1gtj:1 (1.75) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    15364 1gtj:2 (1.75) BS01 peptide ? GO:0004252 ... Q8RR56 12057200
    15365 1gtj:2 (1.75) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    15366 1gtk:A (1.66) BS01 DPM 2.5.1.61 GO:0004418 ... P06983 12555854
    15367 1gtl:1 (2.8) BS01 peptide ? GO:0004252 ... Q8RR56 12057200
    15368 1gtl:1 (2.8) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    15369 1gtl:2 (2.8) BS01 peptide ? GO:0004252 ... Q8RR56 12057200
    15370 1gtl:2 (2.8) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    15371 1gtn:A (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15372 1gtn:A (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15373 1gtn:A (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15374 1gtn:B (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15375 1gtn:B (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15376 1gtn:C (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15377 1gtn:C (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15378 1gtn:D (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15379 1gtn:D (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15380 1gtn:E (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15381 1gtn:E (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15382 1gtn:F (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15383 1gtn:F (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15384 1gtn:G (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15385 1gtn:G (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15386 1gtn:H (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15387 1gtn:H (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15388 1gtn:I (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15389 1gtn:I (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15390 1gtn:J (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15391 1gtn:J (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15392 1gtn:K (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15393 1gtn:K (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15394 1gtn:L (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    15395 1gtn:L (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15396 1gtn:L (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15397 1gtn:M (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    15398 1gtn:M (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15399 1gtn:M (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15400 1gtn:N (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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