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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    13601 1g5q:G (2.57) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13602 1g5q:L (2.57) BS01 peptide 4.1.1.- GO:0003824 ... P30197 11101502
    13603 1g5q:L (2.57) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13604 1g5s:A (2.61) BS01 I17 2.7.11.22 GO:0000082 ... P24941 11170642 PDBbind: -logKd/Ki=7.32, IC50=48nM
    BindingDB: IC50=48nM
    13605 1g5t:A (1.8) BS01 MG 2.5.1.17 GO:0005524 ... P31570 11148030
    13606 1g5t:A (1.8) BS02 ATP 2.5.1.17 GO:0005524 ... P31570 11148030
    13607 1g5y:B (2.0) BS01 REA ? GO:0003677 ... P19793 10970886
    13608 1g5y:C (2.0) BS01 REA ? GO:0003677 ... P19793 10970886
    13609 1g60:A (1.74) BS01 SAM 2.1.1.72 GO:0003676 ... P23192 12954781
    13610 1g60:B (1.74) BS01 SAM 2.1.1.72 GO:0003676 ... P23192 12954781
    13611 1g63:A (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13612 1g63:A (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13613 1g63:B (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13614 1g63:B (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13615 1g63:C (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13616 1g63:C (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13617 1g63:D (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13618 1g63:D (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13619 1g63:E (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13620 1g63:E (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13621 1g63:F (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13622 1g63:F (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13623 1g63:G (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13624 1g63:G (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13625 1g63:H (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13626 1g63:H (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13627 1g63:I (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13628 1g63:I (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13629 1g63:J (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13630 1g63:J (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13631 1g63:K (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13632 1g63:K (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13633 1g63:L (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13634 1g63:L (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    13635 1g64:A (2.1) BS01 MG 2.5.1.17 GO:0005524 ... P31570 11148030
    13636 1g64:A (2.1) BS02 B12 2.5.1.17 GO:0005524 ... P31570 11148030
    13637 1g64:A (2.1) BS03 ATP 2.5.1.17 GO:0005524 ... P31570 11148030
    13638 1g64:B (2.1) BS01 MG 2.5.1.17 GO:0005524 ... P31570 11148030
    13639 1g64:B (2.1) BS02 ATP 2.5.1.17 GO:0005524 ... P31570 11148030
    13640 1g65:G (2.25) BS01 MG 3.4.25.1 GO:0000502 ... P21243 N/A
    13641 1g65:H (2.25) BS01 MG 3.4.25.1 GO:0004298 ... P25043 N/A
    13642 1g65:I (2.25) BS01 MG 3.4.25.1 GO:0000502 ... P25451 N/A
    13643 1g65:K (2.25) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 N/A
    13644 1g65:K (2.25) BS02 MG 3.4.25.1 GO:0004298 ... P30656 N/A
    13645 1g65:L (2.25) BS01 peptide 3.4.25.1 GO:0000502 ... P23724 N/A
    13646 1g65:L (2.25) BS02 MG 3.4.25.1 GO:0000502 ... P23724 N/A
    13647 1g65:L (2.25) BS03 MG 3.4.25.1 GO:0000502 ... P23724 N/A
    13648 1g65:N (2.25) BS01 MG 3.4.25.1 GO:0000502 ... P38624 N/A
    13649 1g65:Y (2.25) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 N/A
    13650 1g65:Z (2.25) BS01 peptide 3.4.25.1 GO:0000502 ... P23724 N/A
    13651 1g66:A (0.9) BS01 SO4 3.1.1.72 GO:0005576 ... O59893 11134051
    13652 1g66:A (0.9) BS02 SO4 3.1.1.72 GO:0005576 ... O59893 11134051
    13653 1g66:A (0.9) BS03 SO4 3.1.1.72 GO:0005576 ... O59893 11134051
    13654 1g67:A (1.4) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    13655 1g67:A (1.4) BS02 ICP 2.5.1.3 GO:0000287 ... P39594 11513589
    13656 1g67:A (1.4) BS03 POP 2.5.1.3 GO:0000287 ... P39594 11513589
    13657 1g67:A (1.4) BS04 TZP 2.5.1.3 GO:0000287 ... P39594 11513589
    13658 1g67:B (1.4) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    13659 1g67:B (1.4) BS02 ICP 2.5.1.3 GO:0000287 ... P39594 11513589
    13660 1g67:B (1.4) BS03 POP 2.5.1.3 GO:0000287 ... P39594 11513589
    13661 1g67:B (1.4) BS04 TZP 2.5.1.3 GO:0000287 ... P39594 11513589
    13662 1g69:A (1.5) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    13663 1g69:A (1.5) BS02 ICP 2.5.1.3 GO:0000287 ... P39594 11513589
    13664 1g69:A (1.5) BS03 POP 2.5.1.3 GO:0000287 ... P39594 11513589
    13665 1g69:A (1.5) BS04 TZP 2.5.1.3 GO:0000287 ... P39594 11513589
    13666 1g69:B (1.5) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    13667 1g69:B (1.5) BS02 ICP 2.5.1.3 GO:0000287 ... P39594 11513589
    13668 1g69:B (1.5) BS03 POP 2.5.1.3 GO:0000287 ... P39594 11513589
    13669 1g69:B (1.5) BS04 TZP 2.5.1.3 GO:0000287 ... P39594 11513589
    13670 1g6b:A (1.9) BS01 SF4 ? GO:0003677 ... P00214 11704670
    13671 1g6b:A (1.9) BS02 F3S ? GO:0003677 ... P00214 11704670
    13672 1g6c:A (1.4) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    13673 1g6c:A (1.4) BS02 IFP 2.5.1.3 GO:0000287 ... P39594 11513589
    13674 1g6c:A (1.4) BS03 POP 2.5.1.3 GO:0000287 ... P39594 11513589
    13675 1g6c:A (1.4) BS04 TZP 2.5.1.3 GO:0000287 ... P39594 11513589
    13676 1g6c:B (1.4) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    13677 1g6c:B (1.4) BS02 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    13678 1g6c:B (1.4) BS03 IFP 2.5.1.3 GO:0000287 ... P39594 11513589
    13679 1g6c:B (1.4) BS04 POP 2.5.1.3 GO:0000287 ... P39594 11513589
    13680 1g6c:B (1.4) BS05 TZP 2.5.1.3 GO:0000287 ... P39594 11513589
    13681 1g6h:A (1.6) BS01 ADP ? GO:0005524 ... Q58663 11470432
    13682 1g6i:A (1.59) BS01 DMJ 3.2.1.113 GO:0004559 ... P32906 N/A
    13683 1g6k:A (2.0) BS01 NAD 1.1.1.47 GO:0016491 ... P40288 N/A
    13684 1g6k:B (2.0) BS01 NAD 1.1.1.47 GO:0016491 ... P40288 N/A
    13685 1g6k:E (2.0) BS01 NAD 1.1.1.47 GO:0016491 ... P40288 N/A
    13686 1g6k:F (2.0) BS01 NAD 1.1.1.47 GO:0016491 ... P40288 N/A
    13687 1g6n:A (2.1) BS01 CMP ? GO:0003677 ... P0ACJ8 11124031
    13688 1g6n:B (2.1) BS01 CMP ? GO:0003677 ... P0ACJ8 11124031
    13689 1g6o:A (2.5) BS01 ADP ? GO:0000166 ... Q7BK04 11163218
    13690 1g6o:B (2.5) BS01 ADP ? GO:0000166 ... Q7BK04 11163218
    13691 1g6r:A (2.8) BS01 peptide ? GO:0002250 ... P01738 10755612
    13692 1g6s:A (1.5) BS01 S3P 2.5.1.19 GO:0003824 ... P0A6D3 11171958 PDBbind: -logKd/Ki=5.15, Kd=7uM
    BindingDB: Kd=7000nM
    13693 1g6s:A (1.5) BS02 GPJ 2.5.1.19 GO:0003824 ... P0A6D3 11171958
    13694 1g6t:A (1.6) BS01 PO4 2.5.1.19 GO:0003824 ... P0A6D3 11171958
    13695 1g6t:A (1.6) BS02 S3P 2.5.1.19 GO:0003824 ... P0A6D3 11171958 BindingDB: Kd=7000nM
    13696 1g6v:A (3.5) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004089 ... P00921 11342547
    13697 1g71:A (2.3) BS01 ZN 2.7.7.- GO:0000428 ... Q9P9H1 11135672
    13698 1g71:B (2.3) BS01 ZN 2.7.7.- GO:0000428 ... Q9P9H1 11135672
    13699 1g72:A (1.9) BS01 CA 1.1.2.7 GO:0005509 ... P38539 11149955
    13700 1g72:A (1.9) BS02 PQQ 1.1.2.7 GO:0005509 ... P38539 11149955
    13701 1g72:C (1.9) BS01 CA 1.1.2.7 GO:0005509 ... P38539 11149955
    13702 1g72:C (1.9) BS02 PQQ 1.1.2.7 GO:0005509 ... P38539 11149955
    13703 1g74:A (1.7) BS01 OLA ? GO:0005324 ... P04117 14594993 MOAD: Kd=0.3uM
    PDBbind: -logKd/Ki=6.52, Kd=0.30uM
    13704 1g76:A (2.2) BS01 PO4 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    13705 1g76:A (2.2) BS02 FMN 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    13706 1g76:A (2.2) BS03 PLP 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    13707 1g77:A (2.1) BS01 PO4 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    13708 1g77:A (2.1) BS02 FMN 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    13709 1g77:A (2.1) BS03 PLP 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    13710 1g78:A (2.2) BS01 PO4 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    13711 1g78:A (2.2) BS02 FMN 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    13712 1g78:A (2.2) BS03 PLP 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    13713 1g78:A (2.2) BS04 PLP 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    13714 1g79:A (2.0) BS01 PO4 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    13715 1g79:A (2.0) BS02 FMN 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    13716 1g79:A (2.0) BS03 PLP 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    13717 1g79:A (2.0) BS04 PLP 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    13718 1g7a:B (1.2) BS01 peptide ? GO:0005179 ... P01308 11468392
    13719 1g7a:B (1.2) BS02 peptide ? GO:0005179 ... P01308 11468392
    13720 1g7a:F (1.2) BS01 peptide ? GO:0005179 ... P01308 11468392
    13721 1g7a:F (1.2) BS02 peptide ? GO:0005179 ... P01308 11468392
    13722 1g7b:B (1.3) BS01 peptide ? GO:0005179 ... P01308 11468392
    13723 1g7b:B (1.3) BS02 peptide ? GO:0005179 ... P01308 11468392
    13724 1g7b:F (1.3) BS01 peptide ? GO:0005179 ... P01308 11468392
    13725 1g7b:F (1.3) BS02 peptide ? GO:0005179 ... P01308 11468392
    13726 1g7b:F (1.3) BS03 peptide ? GO:0005179 ... P01308 11468392
    13727 1g7c:A (2.05) BS01 5GP ? GO:0000329 ... P02994 11373622
    13728 1g7f:A (1.8) BS01 INZ 3.1.3.48 GO:0004725 ... P18031 11341829 MOAD: Ki=3.4uM
    PDBbind: -logKd/Ki=5.47, Ki=3.4uM
    13729 1g7g:A (2.2) BS01 INX 3.1.3.48 GO:0004725 ... P18031 11341829 MOAD: Ki=0.25uM
    PDBbind: -logKd/Ki=6.60, Ki=0.25uM
    13730 1g7s:A (2.0) BS01 GDP ? GO:0003743 ... O26359 11114334
    13731 1g7t:A (2.0) BS01 GNP ? GO:0003743 ... O26359 11114334
    13732 1g7u:A (2.8) BS01 PEP 2.5.1.55 GO:0005737 ... P0A715 11371194
    13733 1g7v:A (2.4) BS01 PAI 2.5.1.55 GO:0005737 ... P0A715 11371194 MOAD: Kd=0.4uM
    PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    13734 1g7w:A (2.2) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 11148029
    13735 1g7x:A (2.2) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 11148029
    13736 1g7y:A (2.5) BS01 CA ? GO:0005537 ... P19588 11491289
    13737 1g7y:A (2.5) BS02 MN ? GO:0005537 ... P19588 11491289
    13738 1g7y:B (2.5) BS01 CA ? GO:0005537 ... P19588 11491289
    13739 1g7y:B (2.5) BS02 MN ? GO:0005537 ... P19588 11491289
    13740 1g7y:C (2.5) BS01 CA ? GO:0005537 ... P19588 11491289
    13741 1g7y:C (2.5) BS02 MN ? GO:0005537 ... P19588 11491289
    13742 1g7y:D (2.5) BS01 CA ? GO:0005537 ... P19588 11491289
    13743 1g7y:D (2.5) BS02 MN ? GO:0005537 ... P19588 11491289
    13744 1g7y:E (2.5) BS01 CA ? GO:0005537 ... P19588 11491289
    13745 1g7y:E (2.5) BS02 MN ? GO:0005537 ... P19588 11491289
    13746 1g7y:F (2.5) BS01 CA ? GO:0005537 ... P19588 11491289
    13747 1g7y:F (2.5) BS02 MN ? GO:0005537 ... P19588 11491289
    13748 1g82:A (2.6) BS01 FUC ? GO:0008083 ... P31371 11223514
    13749 1g85:A (1.8) BS01 3OL ? GO:0005549 ... P07435 11114310 MOAD: Kd=3.3uM
    PDBbind: -logKd/Ki=5.48, Kd=3.3uM
    13750 1g85:A (1.8) BS02 3OL ? GO:0005549 ... P07435 11114310 MOAD: Kd=3.3uM
    PDBbind: -logKd/Ki=5.48, Kd=3.3uM
    13751 1g85:B (1.8) BS01 3OL ? GO:0005549 ... P07435 11114310 MOAD: Kd=3.3uM
    PDBbind: -logKd/Ki=5.48, Kd=3.3uM
    13752 1g86:A (1.8) BS01 NEQ 3.1.1.5 GO:0002667 ... Q05315 11834744
    13753 1g86:A (1.8) BS02 NEQ 3.1.1.5 GO:0002667 ... Q05315 11834744
    13754 1g87:A (1.6) BS01 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    13755 1g87:A (1.6) BS02 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    13756 1g87:B (1.6) BS01 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    13757 1g87:B (1.6) BS02 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    13758 1g8f:A (1.95) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11157739
    13759 1g8f:A (1.95) BS02 SO4 2.7.7.4 GO:0000096 ... P08536 11157739
    13760 1g8f:A (1.95) BS03 SO4 2.7.7.4 GO:0000096 ... P08536 11157739
    13761 1g8g:A (2.6) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11157739
    13762 1g8g:A (2.6) BS02 ADX 2.7.7.4 GO:0000096 ... P08536 11157739
    13763 1g8g:B (2.6) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11157739
    13764 1g8g:B (2.6) BS02 ADX 2.7.7.4 GO:0000096 ... P08536 11157739
    13765 1g8h:A (2.8) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11157739
    13766 1g8h:A (2.8) BS02 ADX 2.7.7.4 GO:0000096 ... P08536 11157739
    13767 1g8h:A (2.8) BS03 POP 2.7.7.4 GO:0000096 ... P08536 11157739
    13768 1g8h:B (2.8) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11157739
    13769 1g8h:B (2.8) BS02 ADX 2.7.7.4 GO:0000096 ... P08536 11157739
    13770 1g8h:B (2.8) BS03 POP 2.7.7.4 GO:0000096 ... P08536 11157739
    13771 1g8i:A (1.9) BS01 CA ? GO:0005245 ... P62166 11092894
    13772 1g8i:A (1.9) BS02 CA ? GO:0005245 ... P62166 11092894
    13773 1g8i:A (1.9) BS03 CA ? GO:0005245 ... P62166 11092894
    13774 1g8i:B (1.9) BS01 CA ? GO:0005245 ... P62166 11092894
    13775 1g8i:B (1.9) BS02 CA ? GO:0005245 ... P62166 11092894
    13776 1g8i:B (1.9) BS03 CA ? GO:0005245 ... P62166 11092894
    13777 1g8j:A (2.03) BS01 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    13778 1g8j:A (2.03) BS02 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    13779 1g8j:A (2.03) BS03 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    13780 1g8j:B (2.03) BS01 FES 1.20.9.1 GO:0005886 ... Q7SIF3 11250197
    13781 1g8j:C (2.03) BS01 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    13782 1g8j:C (2.03) BS02 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    13783 1g8j:C (2.03) BS03 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    13784 1g8j:D (2.03) BS01 FES 1.20.9.1 GO:0005886 ... Q7SIF3 11250197
    13785 1g8k:A (1.64) BS01 CA 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    13786 1g8k:A (1.64) BS02 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    13787 1g8k:A (1.64) BS03 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    13788 1g8k:A (1.64) BS04 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    13789 1g8k:B (1.64) BS01 FES 1.20.9.1 GO:0005886 ... Q7SIF3 11250197
    13790 1g8k:C (1.64) BS01 CA 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    13791 1g8k:C (1.64) BS02 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    13792 1g8k:C (1.64) BS03 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    13793 1g8k:C (1.64) BS04 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    13794 1g8k:D (1.64) BS01 FES 1.20.9.1 GO:0005886 ... Q7SIF3 11250197
    13795 1g8k:E (1.64) BS01 CA 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    13796 1g8k:E (1.64) BS02 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    13797 1g8k:E (1.64) BS03 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    13798 1g8k:E (1.64) BS04 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    13799 1g8k:F (1.64) BS01 FES 1.20.9.1 GO:0005886 ... Q7SIF3 11250197
    13800 1g8k:G (1.64) BS01 CA 1.20.9.1 GO:0016491 ... Q7SIF4 11250197

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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