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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    13001 1fyu:B (2.6) BS01 GAL ? GO:0030246 ... P16404 11274466
    13002 1fyu:B (2.6) BS02 MN ? GO:0030246 ... P16404 11274466
    13003 1fyu:B (2.6) BS03 CA ? GO:0030246 ... P16404 11274466
    13004 1fyz:A (2.15) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13005 1fyz:A (2.15) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13006 1fyz:B (2.15) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13007 1fyz:B (2.15) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13008 1fz0:A (2.07) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13009 1fz0:A (2.07) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13010 1fz0:B (2.07) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13011 1fz0:B (2.07) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13012 1fz0:C (2.07) BS01 CA 1.14.13.25 GO:0004497 ... P18798 11456616
    13013 1fz1:A (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13014 1fz1:A (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13015 1fz1:B (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13016 1fz1:B (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13017 1fz1:C (1.96) BS01 CA 1.14.13.25 GO:0004497 ... P18798 11456616
    13018 1fz2:A (2.15) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13019 1fz2:A (2.15) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13020 1fz2:B (2.15) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13021 1fz2:B (2.15) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13022 1fz2:C (2.15) BS01 CA 1.14.13.25 GO:0004497 ... P18798 11456616
    13023 1fz3:A (2.03) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13024 1fz3:A (2.03) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13025 1fz3:B (2.03) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13026 1fz3:B (2.03) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13027 1fz4:A (2.38) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13028 1fz4:A (2.38) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13029 1fz4:B (2.38) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13030 1fz4:B (2.38) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13031 1fz5:A (2.4) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13032 1fz5:B (2.4) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13033 1fz6:A (2.05) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    13034 1fz6:A (2.05) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    13035 1fz6:B (2.05) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    13036 1fz6:B (2.05) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    13037 1fz6:B (2.05) BS03 CA 1.14.13.25 GO:0004497 ... P22869 11456795
    13038 1fz7:A (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    13039 1fz7:A (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    13040 1fz7:B (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    13041 1fz7:B (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    13042 1fz8:A (2.1) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13043 1fz8:A (2.1) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13044 1fz8:A (2.1) BS03 2BM 1.14.13.25 GO:0004497 ... P22869 11297413
    13045 1fz8:A (2.1) BS04 2BM 1.14.13.25 GO:0004497 ... P22869 11297413
    13046 1fz8:B (2.1) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13047 1fz8:B (2.1) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13048 1fz8:B (2.1) BS03 2BM 1.14.13.25 GO:0004497 ... P22869 11297413
    13049 1fz8:B (2.1) BS04 2BM 1.14.13.25 GO:0004497 ... P22869 11297413
    13050 1fz8:B (2.1) BS05 2BM 1.14.13.25 GO:0004497 ... P22869 11297413
    13051 1fz8:C (2.1) BS01 CA 1.14.13.25 GO:0004497 ... P18798 11297413
    13052 1fz8:C (2.1) BS02 2BM 1.14.13.25 GO:0004497 ... P18798 11297413
    13053 1fz8:C (2.1) BS03 2BM 1.14.13.25 GO:0004497 ... P18798 11297413
    13054 1fz8:C (2.1) BS04 2BM 1.14.13.25 GO:0004497 ... P18798 11297413
    13055 1fz8:D (2.1) BS01 2BM 1.14.13.25 GO:0004497 ... P18798 11297413
    13056 1fz8:D (2.1) BS02 2BM 1.14.13.25 GO:0004497 ... P18798 11297413
    13057 1fz8:D (2.1) BS03 2BM 1.14.13.25 GO:0004497 ... P18798 11297413
    13058 1fz9:A (2.3) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13059 1fz9:A (2.3) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13060 1fz9:A (2.3) BS03 ETI 1.14.13.25 GO:0004497 ... P22869 11297413
    13061 1fz9:A (2.3) BS04 ETI 1.14.13.25 GO:0004497 ... P22869 11297413
    13062 1fz9:B (2.3) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13063 1fz9:B (2.3) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13064 1fz9:B (2.3) BS03 ETI 1.14.13.25 GO:0004497 ... P22869 11297413
    13065 1fz9:C (2.3) BS01 ETI 1.14.13.25 GO:0004497 ... P18798 11297413
    13066 1fz9:D (2.3) BS01 ETI 1.14.13.25 GO:0004497 ... P18798 11297413
    13067 1fz9:D (2.3) BS02 ETI 1.14.13.25 GO:0004497 ... P18798 11297413
    13068 1fza:C (2.9) BS01 CA ? GO:0005102 ... P02679 9333233
    13069 1fza:F (2.9) BS01 CA ? GO:0005102 ... P02679 9333233
    13070 1fzb:C (2.9) BS01 peptide ? GO:0005102 ... P02679 9333233
    13071 1fzb:C (2.9) BS02 CA ? GO:0005102 ... P02679 9333233
    13072 1fzb:F (2.9) BS01 peptide ? GO:0005102 ... P02679 9333233
    13073 1fzb:F (2.9) BS02 CA ? GO:0005102 ... P02679 9333233
    13074 1fzc:B (2.3) BS01 peptide ? GO:0005102 ... P02675 9628725
    13075 1fzc:B (2.3) BS02 CA ? GO:0005102 ... P02675 9628725
    13076 1fzc:C (2.3) BS01 peptide ? GO:0005102 ... P02679 9628725
    13077 1fzc:C (2.3) BS02 CA ? GO:0005102 ... P02679 9628725
    13078 1fzc:E (2.3) BS01 peptide ? GO:0005102 ... P02675 9628725
    13079 1fzc:E (2.3) BS02 CA ? GO:0005102 ... P02675 9628725
    13080 1fzc:F (2.3) BS01 peptide ? GO:0005102 ... P02679 9628725
    13081 1fzc:F (2.3) BS02 CA ? GO:0005102 ... P02679 9628725
    13082 1fzd:A (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    13083 1fzd:B (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    13084 1fzd:C (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    13085 1fzd:D (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    13086 1fzd:E (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    13087 1fzd:F (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    13088 1fzd:G (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    13089 1fzd:H (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    13090 1fze:B (3.0) BS01 CA ? GO:0005102 ... P02675 10074346
    13091 1fze:B (3.0) BS02 CA ? GO:0005102 ... P02675 10074346
    13092 1fze:C (3.0) BS01 CA ? GO:0005102 ... P02679 10074346
    13093 1fze:E (3.0) BS01 CA ? GO:0005102 ... P02675 10074346
    13094 1fze:E (3.0) BS02 CA ? GO:0005102 ... P02675 10074346
    13095 1fze:F (3.0) BS01 CA ? GO:0005102 ... P02679 10074346
    13096 1fzf:B (2.7) BS01 peptide ? GO:0005102 ... P02675 10074346
    13097 1fzf:B (2.7) BS02 CA ? GO:0005102 ... P02675 10074346
    13098 1fzf:C (2.7) BS01 peptide ? GO:0005102 ... P02679 10074346
    13099 1fzf:C (2.7) BS02 CA ? GO:0005102 ... P02679 10074346
    13100 1fzf:C (2.7) BS03 CA ? GO:0005102 ... P02679 10074346
    13101 1fzf:E (2.7) BS01 peptide ? GO:0005102 ... P02675 10074346
    13102 1fzf:E (2.7) BS02 CA ? GO:0005102 ... P02675 10074346
    13103 1fzf:E (2.7) BS03 CA ? GO:0005102 ... P02675 10074346
    13104 1fzf:F (2.7) BS01 peptide ? GO:0005102 ... P02679 10074346
    13105 1fzf:F (2.7) BS02 CA ? GO:0005102 ... P02679 10074346
    13106 1fzg:B (2.5) BS01 peptide ? GO:0005102 ... P02675 10074346
    13107 1fzg:B (2.5) BS02 CA ? GO:0005102 ... P02675 10074346
    13108 1fzg:B (2.5) BS03 CA ? GO:0005102 ... P02675 10074346
    13109 1fzg:C (2.5) BS01 peptide ? GO:0005102 ... P02679 10074346
    13110 1fzg:C (2.5) BS02 CA ? GO:0005102 ... P02679 10074346
    13111 1fzg:C (2.5) BS03 CA ? GO:0005102 ... P02679 10074346
    13112 1fzg:E (2.5) BS01 peptide ? GO:0005102 ... P02675 10074346
    13113 1fzg:E (2.5) BS02 CA ? GO:0005102 ... P02675 10074346
    13114 1fzg:E (2.5) BS03 CA ? GO:0005102 ... P02675 10074346
    13115 1fzg:F (2.5) BS01 peptide ? GO:0005102 ... P02679 10074346
    13116 1fzg:F (2.5) BS02 CA ? GO:0005102 ... P02679 10074346
    13117 1fzg:F (2.5) BS03 CA ? GO:0005102 ... P02679 10074346
    13118 1fzh:A (2.6) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13119 1fzh:A (2.6) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13120 1fzh:A (2.6) BS03 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    13121 1fzh:A (2.6) BS04 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    13122 1fzh:B (2.6) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13123 1fzh:B (2.6) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13124 1fzh:B (2.6) BS03 CA 1.14.13.25 GO:0004497 ... P22869 11297413
    13125 1fzh:B (2.6) BS04 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    13126 1fzh:B (2.6) BS05 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    13127 1fzh:B (2.6) BS06 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    13128 1fzi:A (3.3) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13129 1fzi:A (3.3) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13130 1fzi:A (3.3) BS03 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    13131 1fzi:B (3.3) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13132 1fzi:B (3.3) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13133 1fzi:B (3.3) BS03 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    13134 1fzi:B (3.3) BS04 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    13135 1fzq:A (1.7) BS01 GDP ? GO:0000139 ... Q9WUL7 11188688 MOAD: Kd=24nM
    PDBbind: -logKd/Ki=7.62, Kd=24nM
    13136 1fzu:A (1.8) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11513591
    13137 1fzz:A (1.86) BS01 681 3.4.21.36 GO:0004252 ... P00772 11310599
    13138 1g02:A (1.86) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11513591
    13139 1g05:A (2.45) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 11327577
    13140 1g05:A (2.45) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 11327577
    13141 1g05:A (2.45) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    13142 1g05:A (2.45) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    13143 1g05:A (2.45) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    13144 1g05:B (2.45) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 11327577
    13145 1g05:B (2.45) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 11327577
    13146 1g05:B (2.45) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    13147 1g05:B (2.45) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    13148 1g05:B (2.45) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    13149 1g05:B (2.45) BS06 BBH 3.4.24.17 GO:0004222 ... P08254 11327577 MOAD: ic50=3.1nM
    PDBbind: -logKd/Ki=8.51, IC50=3.1nM
    BindingDB: IC50=3.1nM
    13150 1g08:A (1.9) BS01 HEM ? GO:0004601 ... P01966 11112521
    13151 1g08:B (1.9) BS01 HEM ? GO:0004601 ... P02070 11112521
    13152 1g08:C (1.9) BS01 HEM ? GO:0004601 ... P01966 11112521
    13153 1g08:D (1.9) BS01 HEM ? GO:0004601 ... P02070 11112521
    13154 1g09:A (2.04) BS01 HEM ? GO:0004601 ... P01966 11112521
    13155 1g09:B (2.04) BS01 HEM ? GO:0004601 ... P02070 11112521
    13156 1g09:C (2.04) BS01 HEM ? GO:0004601 ... P01966 11112521
    13157 1g09:D (2.04) BS01 HEM ? GO:0004601 ... P02070 11112521
    13158 1g0a:A (2.04) BS01 HEM ? GO:0004601 ... P01966 11112521
    13159 1g0a:B (2.04) BS01 HEM ? GO:0004601 ... P02070 11112521
    13160 1g0a:C (2.04) BS01 HEM ? GO:0004601 ... P01966 11112521
    13161 1g0a:D (2.04) BS01 HEM ? GO:0004601 ... P02070 11112521
    13162 1g0b:A (1.9) BS01 HEM ? GO:0004601 ... P01958 11112521
    13163 1g0b:B (1.9) BS01 HEM ? GO:0004601 ... P02062 11112521
    13164 1g0c:A (1.9) BS01 BGC 3.2.1.4 GO:0000272 ... P19424 11501997
    13165 1g0c:A (1.9) BS02 BGC 3.2.1.4 GO:0000272 ... P19424 11501997
    13166 1g0d:A (2.5) BS01 SO4 2.3.1.-
    2.3.2.13
    3.4.-.-
    3.5.1.44
    GO:0000785 ... P52181 11080504
    13167 1g0e:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11327835
    13168 1g0e:A (1.6) BS02 4MZ 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11327835
    13169 1g0f:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11327835
    13170 1g0h:A (2.3) BS01 CA 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    13171 1g0h:A (2.3) BS02 CA 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    13172 1g0h:A (2.3) BS03 IPD 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    13173 1g0h:B (2.3) BS01 CA 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    13174 1g0h:B (2.3) BS02 CA 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    13175 1g0h:B (2.3) BS03 IPD 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    13176 1g0i:A (2.4) BS01 MN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    13177 1g0i:A (2.4) BS02 MN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    13178 1g0i:A (2.4) BS03 MN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    13179 1g0i:A (2.4) BS04 PO4 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    13180 1g0i:A (2.4) BS05 INS 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    13181 1g0i:B (2.4) BS01 MN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    13182 1g0i:B (2.4) BS02 MN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    13183 1g0i:B (2.4) BS03 MN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    13184 1g0i:B (2.4) BS04 PO4 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    13185 1g0i:B (2.4) BS05 INS 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    13186 1g0n:A (2.0) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    13187 1g0n:A (2.0) BS02 PHH 1.1.1.252 GO:0005575 ... Q12634 11342131 MOAD: Ki=25nM
    13188 1g0n:B (2.0) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    13189 1g0o:A (1.7) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    13190 1g0o:A (1.7) BS02 PYQ 1.1.1.252 GO:0005575 ... Q12634 11342131 MOAD: Ki=14nM
    13191 1g0o:B (1.7) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    13192 1g0o:B (1.7) BS02 PYQ 1.1.1.252 GO:0005575 ... Q12634 11342131 MOAD: Ki=14nM
    13193 1g0o:C (1.7) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    13194 1g0o:C (1.7) BS02 PYQ 1.1.1.252 GO:0005575 ... Q12634 11342131 MOAD: Ki=14nM
    13195 1g0o:D (1.7) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    13196 1g0o:D (1.7) BS02 PYQ 1.1.1.252 GO:0005575 ... Q12634 11342131 MOAD: Ki=14nM
    13197 1g0r:A (1.87) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13198 1g0r:B (1.87) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13199 1g0r:C (1.87) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13200 1g0r:D (1.87) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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