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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11401 1fa5:A (1.8) BS01 ZN 4.4.1.5 GO:0004462 ... P0AC81 10913283
    11402 1fa5:A (1.8) BS02 ZN 4.4.1.5 GO:0004462 ... P0AC81 10913283
    11403 1fa5:B (1.8) BS01 ZN 4.4.1.5 GO:0004462 ... P0AC81 10913283
    11404 1fa5:B (1.8) BS02 ZN 4.4.1.5 GO:0004462 ... P0AC81 10913283
    11405 1fa6:A (1.9) BS01 CO 4.4.1.5 GO:0004462 ... P0AC81 10913283
    11406 1fa6:A (1.9) BS02 CO 4.4.1.5 GO:0004462 ... P0AC81 10913283
    11407 1fa6:B (1.9) BS01 CO 4.4.1.5 GO:0004462 ... P0AC81 10913283
    11408 1fa6:B (1.9) BS02 CO 4.4.1.5 GO:0004462 ... P0AC81 10913283
    11409 1fa9:A (2.4) BS01 GLC 2.4.1.1 GO:0000166 ... P06737 10949035
    11410 1fa9:A (2.4) BS02 AMP 2.4.1.1 GO:0000166 ... P06737 10949035
    11411 1fa9:A (2.4) BS03 PLP 2.4.1.1 GO:0000166 ... P06737 10949035
    11412 1fae:A (2.0) BS01 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11413 1fae:A (2.0) BS02 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11414 1fae:A (2.0) BS03 CA 3.2.1.4 GO:0004553 ... P37698 10985769
    11415 1fag:A (2.7) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    11416 1fag:A (2.7) BS02 PAM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    11417 1fag:B (2.7) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    11418 1fag:B (2.7) BS02 PAM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    11419 1fag:C (2.7) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    11420 1fag:C (2.7) BS02 PAM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    11421 1fag:D (2.7) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    11422 1fag:D (2.7) BS02 PAM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    11423 1fah:A (2.3) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 7578081
    11424 1fah:B (2.3) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 7578081
    11425 1fak:H (2.1) BS01 CA 3.4.21.21 GO:0004252 ... P08709 9925787
    11426 1fak:L (2.1) BS01 GLC 3.4.21.21 GO:0005509 ... P08709 9925787
    11427 1fak:L (2.1) BS02 FUC 3.4.21.21 GO:0005509 ... P08709 9925787
    11428 1fak:L (2.1) BS03 CA 3.4.21.21 GO:0005509 ... P08709 9925787
    11429 1fap:A (2.7) BS01 RAP 5.2.1.8 GO:0000413 ... P62942 8662507 BindingDB: IC50=0.600000nM, EC50=30nM, Ki=0.20nM
    11430 1fap:B (2.7) BS01 RAP 2.7.11.1 GO:0044877 ... P42345 8662507 BindingDB: IC50=>10000nM, Kd=0.600000nM
    11431 1fat:A (2.8) BS01 MN ? GO:0005537 ... P05087 8702788
    11432 1fat:A (2.8) BS02 CA ? GO:0005537 ... P05087 8702788
    11433 1fat:B (2.8) BS01 MN ? GO:0005537 ... P05087 8702788
    11434 1fat:B (2.8) BS02 CA ? GO:0005537 ... P05087 8702788
    11435 1fat:C (2.8) BS01 MN ? GO:0005537 ... P05087 8702788
    11436 1fat:C (2.8) BS02 CA ? GO:0005537 ... P05087 8702788
    11437 1fat:D (2.8) BS01 MN ? GO:0005537 ... P05087 8702788
    11438 1fat:D (2.8) BS02 CA ? GO:0005537 ... P05087 8702788
    11439 1fav:A (3.0) BS01 peptide ? GO:0003700 ... P03069
    P03377
    11026535
    11440 1faw:A (3.09) BS01 HEM ? GO:0004601 ... P01989 11717498
    11441 1faw:B (3.09) BS01 HEM ? GO:0004601 ... P02117 11717498
    11442 1faw:B (3.09) BS02 OXY ? GO:0004601 ... P02117 11717498
    11443 1faw:C (3.09) BS01 HEM ? GO:0004601 ... P01989 11717498
    11444 1faw:D (3.09) BS01 HEM ? GO:0004601 ... P02117 11717498
    11445 1faw:D (3.09) BS02 OXY ? GO:0004601 ... P02117 11717498
    11446 1fax:A (3.0) BS01 CA 3.4.21.6 GO:0004252 ... P00742 8939944
    11447 1fax:A (3.0) BS02 DX9 3.4.21.6 GO:0004252 ... P00742 8939944 PDBbind: -logKd/Ki=7.39, Ki=41nM
    BindingDB: Ki=41nM, IC50=70nM
    11448 1fay:A (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    11449 1fay:A (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    11450 1fay:A (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    11451 1fay:B (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    11452 1fay:B (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    11453 1fay:B (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    11454 1fay:C (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    11455 1fay:C (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    11456 1fay:C (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    11457 1fay:D (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    11458 1fay:D (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    11459 1fay:D (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    11460 1fay:E (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    11461 1fay:E (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    11462 1fay:E (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    11463 1fay:F (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    11464 1fay:F (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    11465 1fay:F (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    11466 1fay:G (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    11467 1fay:G (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    11468 1fay:G (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    11469 1fay:H (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    11470 1fay:H (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    11471 1fay:H (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    11472 1fb1:A (3.1) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 11087827
    11473 1fb1:B (3.1) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 11087827
    11474 1fb1:C (3.1) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 11087827
    11475 1fb1:D (3.1) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 11087827
    11476 1fb1:E (3.1) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 11087827
    11477 1fb5:A (3.5) BS01 NVA 2.1.3.3 GO:0000050 ... P84010 14527149
    11478 1fb7:A (2.6) BS01 ROC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04585 11106162
    11479 1fbb:A (3.2) BS01 RET ? GO:0005216 ... P02945 10949309
    11480 1fbc:A (2.6) BS01 MG 3.1.3.11 GO:0005737 ... P00636 8382525
    11481 1fbc:A (2.6) BS02 AHG 3.1.3.11 GO:0005737 ... P00636 8382525
    11482 1fbc:B (2.6) BS01 MG 3.1.3.11 GO:0005737 ... P00636 8382525
    11483 1fbc:B (2.6) BS02 AHG 3.1.3.11 GO:0005737 ... P00636 8382525
    11484 1fbd:A (2.9) BS01 MN 3.1.3.11 GO:0005737 ... P00636 8382525
    11485 1fbd:A (2.9) BS02 MN 3.1.3.11 GO:0005737 ... P00636 8382525
    11486 1fbd:A (2.9) BS03 AHG 3.1.3.11 GO:0005737 ... P00636 8382525
    11487 1fbd:B (2.9) BS01 MN 3.1.3.11 GO:0005737 ... P00636 8382525
    11488 1fbd:B (2.9) BS02 MN 3.1.3.11 GO:0005737 ... P00636 8382525
    11489 1fbd:B (2.9) BS03 AHG 3.1.3.11 GO:0005737 ... P00636 8382525
    11490 1fbe:A (3.0) BS01 ZN 3.1.3.11 GO:0005737 ... P00636 8382525
    11491 1fbe:A (3.0) BS02 ZN 3.1.3.11 GO:0005737 ... P00636 8382525
    11492 1fbe:A (3.0) BS03 AHG 3.1.3.11 GO:0005737 ... P00636 8382525
    11493 1fbe:B (3.0) BS01 ZN 3.1.3.11 GO:0005737 ... P00636 8382525
    11494 1fbe:B (3.0) BS02 ZN 3.1.3.11 GO:0005737 ... P00636 8382525
    11495 1fbe:B (3.0) BS03 AHG 3.1.3.11 GO:0005737 ... P00636 8382525
    11496 1fbf:A (2.7) BS01 MG 3.1.3.11 GO:0005737 ... P00636 8382525
    11497 1fbf:A (2.7) BS02 AHM 3.1.3.11 GO:0005737 ... P00636 8382525
    11498 1fbf:B (2.7) BS01 MG 3.1.3.11 GO:0005737 ... P00636 8382525
    11499 1fbf:B (2.7) BS02 AHM 3.1.3.11 GO:0005737 ... P00636 8382525
    11500 1fbg:A (3.0) BS01 MN 3.1.3.11 GO:0005737 ... P00636 8382525
    11501 1fbg:A (3.0) BS02 AHM 3.1.3.11 GO:0005737 ... P00636 8382525
    11502 1fbg:B (3.0) BS01 MN 3.1.3.11 GO:0005737 ... P00636 8382525
    11503 1fbg:B (3.0) BS02 AHM 3.1.3.11 GO:0005737 ... P00636 8382525
    11504 1fbh:A (2.5) BS01 AFP 3.1.3.11 GO:0005737 ... P00636 8382525
    11505 1fbh:A (2.5) BS02 FBP 3.1.3.11 GO:0005737 ... P00636 8382525
    11506 1fbh:B (2.5) BS01 AFP 3.1.3.11 GO:0005737 ... P00636 8382525
    11507 1fbh:B (2.5) BS02 FBP 3.1.3.11 GO:0005737 ... P00636 8382525
    11508 1fbk:A (3.2) BS01 RET ? GO:0005216 ... P02945 10949309
    11509 1fbl:A (2.5) BS01 CA 3.4.24.7 GO:0004222 ... P21692 8590015
    11510 1fbl:A (2.5) BS02 CA 3.4.24.7 GO:0004222 ... P21692 8590015
    11511 1fbl:A (2.5) BS03 CA 3.4.24.7 GO:0004222 ... P21692 8590015
    11512 1fbl:A (2.5) BS04 CA 3.4.24.7 GO:0004222 ... P21692 8590015
    11513 1fbl:A (2.5) BS05 ZN 3.4.24.7 GO:0004222 ... P21692 8590015
    11514 1fbl:A (2.5) BS06 ZN 3.4.24.7 GO:0004222 ... P21692 8590015
    11515 1fbl:A (2.5) BS07 HTA 3.4.24.7 GO:0004222 ... P21692 8590015
    11516 1fbo:A (2.3) BS01 GLO 3.2.1.4 GO:0004553 ... P37698 10985769
    11517 1fbo:A (2.3) BS02 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11518 1fbo:A (2.3) BS03 CA 3.2.1.4 GO:0004553 ... P37698 10985769
    11519 1fbp:A (2.5) BS01 F6P 3.1.3.11 GO:0005737 ... P00636 2164670
    11520 1fbp:A (2.5) BS02 MG 3.1.3.11 GO:0005737 ... P00636 2164670
    11521 1fbp:A (2.5) BS03 AMP 3.1.3.11 GO:0005737 ... P00636 2164670 BindingDB: IC50=1300nM
    11522 1fbp:B (2.5) BS01 F6P 3.1.3.11 GO:0005737 ... P00636 2164670
    11523 1fbp:B (2.5) BS02 MG 3.1.3.11 GO:0005737 ... P00636 2164670
    11524 1fbp:B (2.5) BS03 AMP 3.1.3.11 GO:0005737 ... P00636 2164670 BindingDB: IC50=1300nM
    11525 1fbt:A (2.0) BS01 PO4 2.7.1.105
    3.1.3.46
    GO:0003824 ... P07953 8634242
    11526 1fbt:B (2.0) BS01 PO4 2.7.1.105
    3.1.3.46
    GO:0003824 ... P07953 8634242
    11527 1fbv:A (2.9) BS01 peptide 2.3.2.27 GO:0001784 ... P22681 10966114
    11528 1fbv:A (2.9) BS02 ZN 2.3.2.27 GO:0001784 ... P22681 10966114
    11529 1fbv:A (2.9) BS03 ZN 2.3.2.27 GO:0001784 ... P22681 10966114
    11530 1fbw:A (2.0) BS01 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11531 1fbw:A (2.0) BS02 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11532 1fbw:A (2.0) BS03 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11533 1fbw:A (2.0) BS04 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11534 1fbw:A (2.0) BS05 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11535 1fbw:A (2.0) BS06 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11536 1fbw:A (2.0) BS07 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11537 1fbw:A (2.0) BS08 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11538 1fbw:A (2.0) BS09 CA 3.2.1.4 GO:0004553 ... P37698 10985769
    11539 1fbx:A (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    11540 1fbx:B (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    11541 1fbx:C (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    11542 1fbx:D (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    11543 1fbx:E (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    11544 1fbx:F (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    11545 1fbx:G (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    11546 1fbx:H (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    11547 1fbx:I (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    11548 1fbx:J (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    11549 1fbx:K (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    11550 1fbx:L (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    11551 1fbx:M (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    11552 1fbx:N (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    11553 1fbx:O (2.8) BS01 ZN 3.5.4.16 GO:0003934 ... P0A6T5 11087827
    11554 1fby:A (2.25) BS01 9CR ? GO:0003677 ... P19793 10835357 MOAD: Kd=1.5nM
    BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    11555 1fby:B (2.25) BS01 9CR ? GO:0003677 ... P19793 10835357 MOAD: Kd=1.5nM
    BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    11556 1fc0:A (2.4) BS01 NBG 2.4.1.1 GO:0000166 ... P06737 10949035
    11557 1fc0:A (2.4) BS02 PLP 2.4.1.1 GO:0000166 ... P06737 10949035
    11558 1fc0:B (2.4) BS01 NBG 2.4.1.1 GO:0000166 ... P06737 10949035
    11559 1fc0:B (2.4) BS02 PLP 2.4.1.1 GO:0000166 ... P06737 10949035
    11560 1fc4:A (2.0) BS01 AKB 2.3.1.29 GO:0003824 ... P0AB77 11318637
    11561 1fc4:A (2.0) BS02 PLP 2.3.1.29 GO:0003824 ... P0AB77 11318637
    11562 1fc4:A (2.0) BS03 PLP 2.3.1.29 GO:0003824 ... P0AB77 11318637
    11563 1fc4:B (2.0) BS01 PLP 2.3.1.29 GO:0003824 ... P0AB77 11318637
    11564 1fc4:B (2.0) BS02 AKB 2.3.1.29 GO:0003824 ... P0AB77 11318637
    11565 1fc4:B (2.0) BS03 PLP 2.3.1.29 GO:0003824 ... P0AB77 11318637
    11566 1fca:A (1.8) BS01 SF4 ? GO:0009055 ... P00198 15299316
    11567 1fca:A (1.8) BS02 SF4 ? GO:0009055 ... P00198 15299316
    11568 1fcb:A (2.4) BS01 HEM 1.1.2.3 GO:0016491 ... P00175 2329585
    11569 1fcb:A (2.4) BS02 FMN 1.1.2.3 GO:0016491 ... P00175 2329585
    11570 1fcb:B (2.4) BS01 FMN 1.1.2.3 GO:0016491 ... P00175 2329585
    11571 1fcb:B (2.4) BS02 PYR 1.1.2.3 GO:0016491 ... P00175 2329585
    11572 1fcd:A (2.53) BS01 FAD 1.8.2.3 GO:0016491 ... Q06530 7939681
    11573 1fcd:A (2.53) BS02 HEC 1.8.2.3 GO:0016491 ... Q06530 7939681
    11574 1fcd:B (2.53) BS01 FAD 1.8.2.3 GO:0016491 ... Q06530 7939681
    11575 1fcd:B (2.53) BS02 HEC 1.8.2.3 GO:0016491 ... Q06530 7939681
    11576 1fcd:C (2.53) BS01 HEC ? GO:0005506 ... Q06529 7939681
    11577 1fcd:C (2.53) BS02 HEC ? GO:0005506 ... Q06529 7939681
    11578 1fcd:D (2.53) BS01 HEC ? GO:0005506 ... Q06529 7939681
    11579 1fcd:D (2.53) BS02 HEC ? GO:0005506 ... Q06529 7939681
    11580 1fce:A (2.0) BS01 MGL 3.2.1.4 GO:0004553 ... P37698 9755156
    11581 1fce:A (2.0) BS02 SGC 3.2.1.4 GO:0004553 ... P37698 9755156
    11582 1fce:A (2.0) BS03 BGC 3.2.1.4 GO:0004553 ... P37698 9755156
    11583 1fce:A (2.0) BS04 MGL 3.2.1.4 GO:0004553 ... P37698 9755156
    11584 1fce:A (2.0) BS05 BGC 3.2.1.4 GO:0004553 ... P37698 9755156
    11585 1fce:A (2.0) BS06 BGC 3.2.1.4 GO:0004553 ... P37698 9755156
    11586 1fce:A (2.0) BS07 CA 3.2.1.4 GO:0004553 ... P37698 9755156
    11587 1fcj:A (2.0) BS01 SO4 2.5.1.47 GO:0004124 ... P0A1E3 11023792
    11588 1fcj:A (2.0) BS02 PLP 2.5.1.47 GO:0004124 ... P0A1E3 11023792
    11589 1fcj:B (2.0) BS01 SO4 2.5.1.47 GO:0004124 ... P0A1E3 11023792
    11590 1fcj:B (2.0) BS02 PLP 2.5.1.47 GO:0004124 ... P0A1E3 11023792
    11591 1fcj:C (2.0) BS01 SO4 2.5.1.47 GO:0004124 ... P0A1E3 11023792
    11592 1fcj:C (2.0) BS02 PLP 2.5.1.47 GO:0004124 ... P0A1E3 11023792
    11593 1fcj:D (2.0) BS01 SO4 2.5.1.47 GO:0004124 ... P0A1E3 11023792
    11594 1fcj:D (2.0) BS02 PLP 2.5.1.47 GO:0004124 ... P0A1E3 11023792
    11595 1fck:A (2.2) BS01 CO3 3.4.21.- GO:0001503 ... P02788 11128996
    11596 1fck:A (2.2) BS02 CO3 3.4.21.- GO:0001503 ... P02788 11128996
    11597 1fck:A (2.2) BS03 CE 3.4.21.- GO:0001503 ... P02788 11128996
    11598 1fck:A (2.2) BS04 CE 3.4.21.- GO:0001503 ... P02788 11128996
    11599 1fcm:A (2.46) BS01 CXU 3.5.2.6 GO:0008800 ... P00811 N/A
    11600 1fcm:B (2.46) BS01 CXU 3.5.2.6 GO:0008800 ... P00811 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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