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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    806801 8v80:E (2.34) BS06 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806802 8v81:A (3.6) BS01 ATP N/A GO:0005254 ... P13569 39107303
    806803 8v81:A (3.6) BS02 ATP N/A GO:0005254 ... P13569 39107303
    806804 8v81:A (3.6) BS03 CLR N/A GO:0005254 ... P13569 39107303
    806805 8v81:A (3.6) BS04 WG5 N/A GO:0005254 ... P13569 39107303
    806806 8v82:A (2.61) BS01 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806807 8v82:A (2.61) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806808 8v82:A (2.61) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806809 8v82:A (2.61) BS04 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806810 8v82:A (2.61) BS05 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806811 8v82:A (2.61) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806812 8v82:B (2.61) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806813 8v82:B (2.61) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806814 8v82:B (2.61) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806815 8v82:B (2.61) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806816 8v82:B (2.61) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806817 8v82:B (2.61) BS06 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806818 8v82:C (2.61) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806819 8v82:C (2.61) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806820 8v82:C (2.61) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806821 8v82:C (2.61) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806822 8v82:C (2.61) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806823 8v82:C (2.61) BS06 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806824 8v82:D (2.61) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806825 8v82:D (2.61) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806826 8v82:D (2.61) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806827 8v82:D (2.61) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806828 8v82:D (2.61) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806829 8v82:D (2.61) BS06 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806830 8v82:E (2.61) BS01 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806831 8v82:E (2.61) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806832 8v82:E (2.61) BS03 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806833 8v82:E (2.61) BS04 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806834 8v82:E (2.61) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806835 8v82:E (2.61) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806836 8v83:8 (2.53) BS01 rna ? GO:0003674 ... P36080 38632236
    806837 8v83:A (2.53) BS01 rna ? GO:0000027 ... Q08235 38632236
    806838 8v83:B (2.53) BS01 rna ? GO:0000027 ... P14126 38632236
    806839 8v83:C (2.53) BS01 rna ? GO:0002181 ... P10664 38632236
    806840 8v83:C (2.53) BS02 rna ? GO:0002181 ... P10664 38632236
    806841 8v83:D (2.53) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 38632236
    806842 8v83:E (2.53) BS01 rna ? GO:0000027 ... Q02326 38632236
    806843 8v83:F (2.53) BS01 rna ? GO:0000463 ... P05737 38632236
    806844 8v83:G (2.53) BS01 rna ? GO:0000470 ... P17076 38632236
    806845 8v83:G (2.53) BS02 rna ? GO:0000470 ... P17076 38632236
    806846 8v83:H (2.53) BS01 rna ? GO:0002181 ... P05738 38632236
    806847 8v83:I (2.53) BS01 rna ? GO:0003674 ... P53136 38632236
    806848 8v83:J (2.53) BS01 rna ? GO:0000280 ... P36049 38632236
    806849 8v83:K (2.53) BS01 rna ? GO:0000462 ... P38779 38632236
    806850 8v83:L (2.53) BS01 rna ? GO:0002181 ... Q12690 38632236
    806851 8v83:L (2.53) BS02 rna ? GO:0002181 ... Q12690 38632236
    806852 8v83:M (2.53) BS01 rna ? GO:0000027 ... P36105 38632236
    806853 8v83:N (2.53) BS01 rna ? GO:0002181 ... P05748 38632236
    806854 8v83:N (2.53) BS02 rna ? GO:0002181 ... P05748 38632236
    806855 8v83:O (2.53) BS01 rna ? GO:0000470 ... P26784 38632236
    806856 8v83:P (2.53) BS01 rna ? GO:0000448 ... P05740 38632236
    806857 8v83:P (2.53) BS02 rna ? GO:0000448 ... P05740 38632236
    806858 8v83:Q (2.53) BS01 rna ? GO:0002181 ... P0CX49 38632236
    806859 8v83:R (2.53) BS01 rna ? GO:0000460 ... P10962 38632236
    806860 8v83:S (2.53) BS01 rna ? GO:0002181 ... P0CX23 38632236
    806861 8v83:V (2.53) BS01 rna ? GO:0002181 ... P0CX41 38632236
    806862 8v83:W (2.53) BS01 rna ? GO:0000027 ... P33201 38632236
    806863 8v83:Y (2.53) BS01 rna ? GO:0002181 ... P05743 38632236
    806864 8v83:Y (2.53) BS02 rna ? GO:0002181 ... P05743 38632236
    806865 8v83:Z (2.53) BS01 rna ? GO:0000027 ... P38789 38632236
    806866 8v83:a (2.53) BS01 rna ? GO:0000055 ... P0CX43 38632236
    806867 8v83:b (2.53) BS01 rna ? GO:0000054 ... Q02892 38632236
    806868 8v83:e (2.53) BS01 rna ? GO:0002181 ... P38061 38632236
    806869 8v83:f (2.53) BS01 rna ? GO:0000027 ... P05744 38632236
    806870 8v83:h (2.53) BS01 rna ? GO:0000463 ... P0CX84 38632236
    806871 8v83:h (2.53) BS02 rna ? GO:0000463 ... P0CX84 38632236
    806872 8v83:i (2.53) BS01 rna ? GO:0002181 ... P05745 38632236
    806873 8v83:j (2.53) BS01 rna ? GO:0000448 ... P49166 38632236
    806874 8v83:j (2.53) BS02 rna ? GO:0000448 ... P49166 38632236
    806875 8v83:j (2.53) BS03 ZN ? GO:0000448 ... P49166 38632236
    806876 8v83:l (2.53) BS01 rna ? GO:0000463 ... Q08962 38632236
    806877 8v83:l (2.53) BS02 peptide ? GO:0000463 ... Q08962 38632236
    806878 8v83:m (2.53) BS01 rna ? GO:0000463 ... Q04660 38632236
    806879 8v83:n (2.53) BS01 rna ? GO:0000462 ... P53261 38632236
    806880 8v83:n (2.53) BS02 rna ? GO:0000462 ... P53261 38632236
    806881 8v83:o (2.53) BS01 rna ? GO:0000463 ... P53927 38632236
    806882 8v83:q (2.53) BS01 rna 2.1.1.310 GO:0000463 ... P40991 38632236
    806883 8v83:r (2.53) BS01 rna ? GO:0000460 ... P40078 38632236
    806884 8v83:t (2.53) BS01 rna ? GO:0000463 ... P40693 38632236
    806885 8v83:t (2.53) BS02 rna ? GO:0000463 ... P40693 38632236
    806886 8v83:u (2.53) BS01 rna ? GO:0001671 ... Q07915 38632236
    806887 8v83:u (2.53) BS02 ZN ? GO:0001671 ... Q07915 38632236
    806888 8v83:v (2.53) BS01 rna ? GO:0003674 ... P40007 38632236
    806889 8v83:v (2.53) BS02 rna ? GO:0003674 ... P40007 38632236
    806890 8v83:w (2.53) BS01 rna ? GO:0003674 ... P35178 38632236
    806891 8v83:x (2.53) BS01 rna ? GO:0000055 ... P38805 38632236
    806892 8v83:y (2.53) BS01 rna ? GO:0000054 ... Q12522 38632236
    806893 8v84:3 (2.7) BS01 rna 3.6.4.13 GO:0000463 ... Q12389 38632236
    806894 8v84:8 (2.7) BS01 rna ? GO:0003674 ... P36080 38632236
    806895 8v84:A (2.7) BS01 rna ? GO:0000027 ... Q08235 38632236
    806896 8v84:B (2.7) BS01 rna ? GO:0000027 ... P14126 38632236
    806897 8v84:C (2.7) BS01 rna ? GO:0002181 ... P10664 38632236
    806898 8v84:C (2.7) BS02 rna ? GO:0002181 ... P10664 38632236
    806899 8v84:D (2.7) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 38632236
    806900 8v84:E (2.7) BS01 rna ? GO:0000027 ... Q02326 38632236
    806901 8v84:F (2.7) BS01 rna ? GO:0000463 ... P05737 38632236
    806902 8v84:G (2.7) BS01 rna ? GO:0000470 ... P17076 38632236
    806903 8v84:G (2.7) BS02 rna ? GO:0000470 ... P17076 38632236
    806904 8v84:G (2.7) BS03 rna ? GO:0000470 ... P17076 38632236
    806905 8v84:H (2.7) BS01 rna ? GO:0002181 ... P05738 38632236
    806906 8v84:I (2.7) BS01 rna ? GO:0003674 ... P53136 38632236
    806907 8v84:J (2.7) BS01 rna ? GO:0000280 ... P36049 38632236
    806908 8v84:K (2.7) BS01 rna ? GO:0000462 ... P38779 38632236
    806909 8v84:L (2.7) BS01 rna ? GO:0002181 ... Q12690 38632236
    806910 8v84:L (2.7) BS02 rna ? GO:0002181 ... Q12690 38632236
    806911 8v84:M (2.7) BS01 rna ? GO:0000027 ... P36105 38632236
    806912 8v84:N (2.7) BS01 rna ? GO:0002181 ... P05748 38632236
    806913 8v84:N (2.7) BS02 rna ? GO:0002181 ... P05748 38632236
    806914 8v84:O (2.7) BS01 rna ? GO:0000470 ... P26784 38632236
    806915 8v84:P (2.7) BS01 rna ? GO:0000448 ... P05740 38632236
    806916 8v84:P (2.7) BS02 rna ? GO:0000448 ... P05740 38632236
    806917 8v84:Q (2.7) BS01 rna ? GO:0002181 ... P0CX49 38632236
    806918 8v84:R (2.7) BS01 rna ? GO:0000460 ... P10962 38632236
    806919 8v84:S (2.7) BS01 rna ? GO:0002181 ... P0CX23 38632236
    806920 8v84:V (2.7) BS01 rna ? GO:0002181 ... P0CX41 38632236
    806921 8v84:W (2.7) BS01 rna ? GO:0000027 ... P33201 38632236
    806922 8v84:Y (2.7) BS01 rna ? GO:0002181 ... P05743 38632236
    806923 8v84:Y (2.7) BS02 rna ? GO:0002181 ... P05743 38632236
    806924 8v84:Z (2.7) BS01 rna ? GO:0000027 ... P38789 38632236
    806925 8v84:a (2.7) BS01 rna ? GO:0000055 ... P0CX43 38632236
    806926 8v84:b (2.7) BS01 rna ? GO:0000054 ... Q02892 38632236
    806927 8v84:b (2.7) BS02 GDP ? GO:0000054 ... Q02892 38632236
    806928 8v84:b (2.7) BS03 MG ? GO:0000054 ... Q02892 38632236
    806929 8v84:e (2.7) BS01 rna ? GO:0002181 ... P38061 38632236
    806930 8v84:f (2.7) BS01 rna ? GO:0000027 ... P05744 38632236
    806931 8v84:h (2.7) BS01 rna ? GO:0000463 ... P0CX84 38632236
    806932 8v84:h (2.7) BS02 rna ? GO:0000463 ... P0CX84 38632236
    806933 8v84:i (2.7) BS01 rna ? GO:0002181 ... P05745 38632236
    806934 8v84:j (2.7) BS01 rna ? GO:0000448 ... P49166 38632236
    806935 8v84:j (2.7) BS02 rna ? GO:0000448 ... P49166 38632236
    806936 8v84:j (2.7) BS03 ZN ? GO:0000448 ... P49166 38632236
    806937 8v84:l (2.7) BS01 rna ? GO:0000463 ... Q08962 38632236
    806938 8v84:m (2.7) BS01 rna ? GO:0000463 ... Q04660 38632236
    806939 8v84:n (2.7) BS01 rna ? GO:0000462 ... P53261 38632236
    806940 8v84:n (2.7) BS02 rna ? GO:0000462 ... P53261 38632236
    806941 8v84:o (2.7) BS01 rna ? GO:0000463 ... P53927 38632236
    806942 8v84:q (2.7) BS01 rna 2.1.1.310 GO:0000463 ... P40991 38632236
    806943 8v84:r (2.7) BS01 rna ? GO:0000460 ... P40078 38632236
    806944 8v84:t (2.7) BS01 rna ? GO:0000463 ... P40693 38632236
    806945 8v84:t (2.7) BS02 rna ? GO:0000463 ... P40693 38632236
    806946 8v84:u (2.7) BS01 rna ? GO:0001671 ... Q07915 38632236
    806947 8v84:u (2.7) BS02 ZN ? GO:0001671 ... Q07915 38632236
    806948 8v84:v (2.7) BS01 rna ? GO:0003674 ... P40007 38632236
    806949 8v84:v (2.7) BS02 rna ? GO:0003674 ... P40007 38632236
    806950 8v84:w (2.7) BS01 rna ? GO:0003674 ... P35178 38632236
    806951 8v84:x (2.7) BS01 rna ? GO:0000055 ... P38805 38632236
    806952 8v84:y (2.7) BS01 rna ? GO:0000054 ... Q12522 38632236
    806953 8v86:A (2.47) BS01 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806954 8v86:A (2.47) BS02 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806955 8v86:A (2.47) BS03 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806956 8v86:B (2.47) BS01 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806957 8v86:B (2.47) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806958 8v86:B (2.47) BS03 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806959 8v86:C (2.47) BS01 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806960 8v86:C (2.47) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806961 8v86:C (2.47) BS03 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806962 8v86:D (2.47) BS01 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806963 8v86:D (2.47) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806964 8v86:D (2.47) BS03 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806965 8v86:E (2.47) BS01 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806966 8v86:E (2.47) BS02 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806967 8v86:E (2.47) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806968 8v87:3 (2.66) BS01 rna 3.6.4.13 GO:0000463 ... Q12389 38632236
    806969 8v87:3 (2.66) BS02 ADP 3.6.4.13 GO:0000463 ... Q12389 38632236
    806970 8v87:7 (2.66) BS01 rna ? GO:0000055 ... P43586 38632236
    806971 8v87:8 (2.66) BS01 rna ? GO:0003729 ... P39744 38632236
    806972 8v87:A (2.66) BS01 rna ? GO:0000027 ... Q08235 38632236
    806973 8v87:B (2.66) BS01 rna ? GO:0000027 ... P14126 38632236
    806974 8v87:C (2.66) BS01 rna ? GO:0002181 ... P10664 38632236
    806975 8v87:C (2.66) BS02 rna ? GO:0002181 ... P10664 38632236
    806976 8v87:D (2.66) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 38632236
    806977 8v87:E (2.66) BS01 rna ? GO:0000027 ... Q02326 38632236
    806978 8v87:F (2.66) BS01 rna ? GO:0000463 ... P05737 38632236
    806979 8v87:G (2.66) BS01 rna ? GO:0000470 ... P17076 38632236
    806980 8v87:G (2.66) BS02 rna ? GO:0000470 ... P17076 38632236
    806981 8v87:G (2.66) BS03 rna ? GO:0000470 ... P17076 38632236
    806982 8v87:H (2.66) BS01 rna ? GO:0002181 ... P05738 38632236
    806983 8v87:I (2.66) BS01 rna ? GO:0003682 ... Q07896 38632236
    806984 8v87:J (2.66) BS01 rna ? GO:0000280 ... P36049 38632236
    806985 8v87:K (2.66) BS01 rna ? GO:0000462 ... P38779 38632236
    806986 8v87:L (2.66) BS01 rna ? GO:0002181 ... Q12690 38632236
    806987 8v87:L (2.66) BS02 rna ? GO:0002181 ... Q12690 38632236
    806988 8v87:M (2.66) BS01 rna ? GO:0000027 ... P36105 38632236
    806989 8v87:N (2.66) BS01 rna ? GO:0002181 ... P05748 38632236
    806990 8v87:N (2.66) BS02 rna ? GO:0002181 ... P05748 38632236
    806991 8v87:O (2.66) BS01 rna ? GO:0000470 ... P26784 38632236
    806992 8v87:P (2.66) BS01 rna ? GO:0000448 ... P05740 38632236
    806993 8v87:P (2.66) BS02 rna ? GO:0000448 ... P05740 38632236
    806994 8v87:Q (2.66) BS01 rna ? GO:0002181 ... P0CX49 38632236
    806995 8v87:R (2.66) BS01 rna ? GO:0002181 ... P0CX82 38632236
    806996 8v87:S (2.66) BS01 rna ? GO:0002181 ... P0CX23 38632236
    806997 8v87:U (2.66) BS01 rna ? GO:0002181 ... P05749 38632236
    806998 8v87:V (2.66) BS01 rna ? GO:0002181 ... P0CX41 38632236
    806999 8v87:W (2.66) BS01 rna ? GO:0000027 ... P33201 38632236
    807000 8v87:X (2.66) BS01 rna ? GO:0000027 ... P04456 38632236

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218