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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    806601 8v6g:A (11.16) BS01 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806602 8v6g:A (11.16) BS02 rna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806603 8v6g:A (11.16) BS03 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806604 8v6g:A (11.16) BS04 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806605 8v6g:A (11.16) BS05 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806606 8v6g:A (11.16) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806607 8v6g:C (11.16) BS01 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    806608 8v6g:C (11.16) BS02 rna ? GO:0003677 ... A0A1L8G3G3 38491139
    806609 8v6g:C (11.16) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    806610 8v6g:D (11.16) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    806611 8v6h:A (11.11) BS01 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806612 8v6h:A (11.11) BS02 rna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806613 8v6h:A (11.11) BS03 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806614 8v6h:A (11.11) BS04 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806615 8v6h:A (11.11) BS05 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806616 8v6h:A (11.11) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806617 8v6h:C (11.11) BS01 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    806618 8v6h:C (11.11) BS02 rna ? GO:0003677 ... A0A1L8G3G3 38491139
    806619 8v6h:C (11.11) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    806620 8v6h:D (11.11) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    806621 8v6i:A (14.06) BS01 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806622 8v6i:A (14.06) BS02 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806623 8v6i:A (14.06) BS03 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806624 8v6i:A (14.06) BS04 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806625 8v6i:A (14.06) BS05 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806626 8v6i:A (14.06) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806627 8v6i:C (14.06) BS01 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    806628 8v6i:C (14.06) BS02 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    806629 8v6i:C (14.06) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    806630 8v6i:D (14.06) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    806631 8v6j:A (11.11) BS01 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806632 8v6j:A (11.11) BS02 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806633 8v6j:A (11.11) BS03 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806634 8v6j:A (11.11) BS04 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806635 8v6j:A (11.11) BS05 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806636 8v6j:A (11.11) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806637 8v6j:C (11.11) BS01 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    806638 8v6j:C (11.11) BS02 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    806639 8v6j:C (11.11) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    806640 8v6j:D (11.11) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    806641 8v6l:A (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    806642 8v6l:B (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    806643 8v6l:C (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    806644 8v6l:D (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    806645 8v6m:A (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    806646 8v6m:B (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    806647 8v6m:C (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    806648 8v6m:D (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    806649 8v6n:A (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    806650 8v6n:A (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    806651 8v6n:A (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    806652 8v6n:B (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    806653 8v6n:B (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    806654 8v6n:B (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    806655 8v6n:C (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    806656 8v6n:C (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    806657 8v6n:C (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    806658 8v6n:D (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    806659 8v6n:D (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    806660 8v6n:D (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    806661 8v6o:A (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    806662 8v6o:A (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    806663 8v6o:B (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    806664 8v6o:B (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    806665 8v6o:C (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    806666 8v6o:C (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    806667 8v6o:D (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    806668 8v6o:D (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    806669 8v6p:A (1.74) BS01 A1ACN 4.1.99.1 GO:0006520 ... P28796 N/A
    806670 8v6p:B (1.74) BS01 A1ABZ 4.1.99.1 GO:0006520 ... P28796 N/A
    806671 8v6p:C (1.74) BS01 A1ACN 4.1.99.1 GO:0006520 ... P28796 N/A
    806672 8v6p:D (1.74) BS01 A1ABZ 4.1.99.1 GO:0006520 ... P28796 N/A
    806673 8v6v:A (2.8) BS01 dna ? GO:0000786 ... P84233 38472177
    806674 8v6v:A (2.8) BS02 dna ? GO:0000786 ... P84233 38472177
    806675 8v6v:B (2.8) BS01 dna ? GO:0000786 ... P62799 38472177
    806676 8v6v:B (2.8) BS02 dna ? GO:0000786 ... P62799 38472177
    806677 8v6v:C (2.8) BS01 dna ? GO:0000786 ... P06897 38472177
    806678 8v6v:C (2.8) BS02 dna ? GO:0000786 ... P06897 38472177
    806679 8v6v:D (2.8) BS01 dna ? GO:0000786 ... P02281 38472177
    806680 8v6v:D (2.8) BS02 dna ? GO:0000786 ... P02281 38472177
    806681 8v6v:E (2.8) BS01 dna ? GO:0000786 ... P84233 38472177
    806682 8v6v:E (2.8) BS02 dna ? GO:0000786 ... P84233 38472177
    806683 8v6v:F (2.8) BS01 dna ? GO:0000786 ... P62799 38472177
    806684 8v6v:F (2.8) BS02 dna ? GO:0000786 ... P62799 38472177
    806685 8v6v:G (2.8) BS01 dna ? GO:0000786 ... P06897 38472177
    806686 8v6v:G (2.8) BS02 dna ? GO:0000786 ... P06897 38472177
    806687 8v6v:H (2.8) BS01 dna ? GO:0000786 ... P02281 38472177
    806688 8v6v:H (2.8) BS02 dna ? GO:0000786 ... P02281 38472177
    806689 8v6v:W (2.8) BS01 dna 3.6.4.- GO:0000183 ... O60264 38472177
    806690 8v6v:W (2.8) BS02 dna 3.6.4.- GO:0000183 ... O60264 38472177
    806691 8v6v:W (2.8) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    806692 8v6v:X (2.8) BS01 dna 3.6.4.- GO:0000183 ... O60264 38472177
    806693 8v6v:X (2.8) BS02 dna 3.6.4.- GO:0000183 ... O60264 38472177
    806694 8v6v:X (2.8) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    806695 8v7a:A (1.95) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806696 8v7a:A (1.95) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806697 8v7a:A (1.95) BS03 DCP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806698 8v7a:A (1.95) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806699 8v7b:A (1.9) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806700 8v7b:A (1.9) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806701 8v7b:A (1.9) BS03 HF4 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806702 8v7b:A (1.9) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806703 8v7c:A (1.79) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806704 8v7c:A (1.79) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806705 8v7c:A (1.79) BS03 GTF 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806706 8v7c:A (1.79) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806707 8v7d:A (1.95) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806708 8v7d:A (1.95) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806709 8v7d:A (1.95) BS03 CTP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806710 8v7d:A (1.95) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806711 8v7e:A (1.82) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806712 8v7e:A (1.82) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806713 8v7e:A (1.82) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806714 8v7e:A (1.82) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806715 8v7e:A (1.82) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806716 8v7f:A (2.2) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806717 8v7f:A (2.2) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806718 8v7f:A (2.2) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806719 8v7f:A (2.2) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806720 8v7f:A (2.2) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806721 8v7g:A (1.52) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806722 8v7g:A (1.52) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806723 8v7g:A (1.52) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806724 8v7g:A (1.52) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806725 8v7g:A (1.52) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806726 8v7h:A (1.68) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806727 8v7h:A (1.68) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806728 8v7h:A (1.68) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806729 8v7h:A (1.68) BS04 DTP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806730 8v7i:A (1.72) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806731 8v7i:A (1.72) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806732 8v7i:A (1.72) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806733 8v7i:A (1.72) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806734 8v7i:A (1.72) BS05 DTP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806735 8v7j:A (1.66) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806736 8v7j:A (1.66) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806737 8v7j:A (1.66) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806738 8v7j:A (1.66) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806739 8v7j:A (1.66) BS05 DTP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806740 8v7k:A (1.65) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806741 8v7k:A (1.65) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806742 8v7k:A (1.65) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806743 8v7k:A (1.65) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806744 8v7k:A (1.65) BS05 DTP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    806745 8v7l:A (2.9) BS01 dna ? GO:0000786 ... P84233 38472177
    806746 8v7l:A (2.9) BS02 dna ? GO:0000786 ... P84233 38472177
    806747 8v7l:B (2.9) BS01 dna ? GO:0000786 ... P62799 38472177
    806748 8v7l:B (2.9) BS02 dna ? GO:0000786 ... P62799 38472177
    806749 8v7l:C (2.9) BS01 dna ? GO:0000786 ... P06897 38472177
    806750 8v7l:C (2.9) BS02 dna ? GO:0000786 ... P06897 38472177
    806751 8v7l:D (2.9) BS01 dna ? GO:0000786 ... P02281 38472177
    806752 8v7l:D (2.9) BS02 dna ? GO:0000786 ... P02281 38472177
    806753 8v7l:E (2.9) BS01 dna ? GO:0000786 ... P84233 38472177
    806754 8v7l:E (2.9) BS02 dna ? GO:0000786 ... P84233 38472177
    806755 8v7l:F (2.9) BS01 dna ? GO:0000786 ... P62799 38472177
    806756 8v7l:F (2.9) BS02 dna ? GO:0000786 ... P62799 38472177
    806757 8v7l:G (2.9) BS01 dna ? GO:0000786 ... P06897 38472177
    806758 8v7l:G (2.9) BS02 dna ? GO:0000786 ... P06897 38472177
    806759 8v7l:H (2.9) BS01 dna ? GO:0000786 ... P02281 38472177
    806760 8v7l:H (2.9) BS02 dna ? GO:0000786 ... P02281 38472177
    806761 8v7l:W (2.9) BS01 dna 3.6.4.- GO:0000183 ... O60264 38472177
    806762 8v7l:W (2.9) BS02 dna 3.6.4.- GO:0000183 ... O60264 38472177
    806763 8v7l:W (2.9) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    806764 8v7r:A (1.41) BS01 YG9 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004386 ... Q32ZE1 N/A
    806765 8v7r:A (1.41) BS02 YG9 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004386 ... Q32ZE1 N/A
    806766 8v7u:A (1.82) BS01 YDU 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004386 ... Q32ZE1 N/A
    806767 8v7z:A (3.4) BS01 MG N/A GO:0005254 ... P13569 39107303
    806768 8v7z:A (3.4) BS02 MG N/A GO:0005254 ... P13569 39107303
    806769 8v7z:A (3.4) BS03 ATP N/A GO:0005254 ... P13569 39107303
    806770 8v7z:A (3.4) BS04 ATP N/A GO:0005254 ... P13569 39107303
    806771 8v7z:A (3.4) BS05 CLR N/A GO:0005254 ... P13569 39107303
    806772 8v80:A (2.34) BS01 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806773 8v80:A (2.34) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806774 8v80:A (2.34) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806775 8v80:A (2.34) BS04 YLR ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806776 8v80:A (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806777 8v80:A (2.34) BS06 YLR ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806778 8v80:B (2.34) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806779 8v80:B (2.34) BS02 YLR ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806780 8v80:B (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806781 8v80:B (2.34) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806782 8v80:B (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806783 8v80:B (2.34) BS06 YLR ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806784 8v80:C (2.34) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806785 8v80:C (2.34) BS02 YLR ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806786 8v80:C (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806787 8v80:C (2.34) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806788 8v80:C (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806789 8v80:C (2.34) BS06 YLR ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806790 8v80:D (2.34) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806791 8v80:D (2.34) BS02 YLR ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806792 8v80:D (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806793 8v80:D (2.34) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806794 8v80:D (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806795 8v80:D (2.34) BS06 YLR ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806796 8v80:E (2.34) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806797 8v80:E (2.34) BS02 YLR ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806798 8v80:E (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806799 8v80:E (2.34) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    806800 8v80:E (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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