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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    806401 8uzn:C (2.15) BS01 AMP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    806402 8uzn:D (2.15) BS01 AMP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    806403 8uzo:A (2.1) BS01 ADP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    806404 8uzo:B (2.1) BS01 ADP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    806405 8uzo:C (2.1) BS01 ADP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    806406 8uzo:D (2.1) BS01 ADP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    806407 8uzu:A (1.9) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    806408 8uzu:B (1.9) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    806409 8uzu:C (1.9) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    806410 8uzu:D (1.9) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    806411 8uzx:A (5.4) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    806412 8uzx:B (5.4) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    806413 8uzx:C (5.4) BS01 CA ? GO:0003009 ... P63317 38387550
    806414 8uzx:C (5.4) BS02 CA ? GO:0003009 ... P63317 38387550
    806415 8uzx:C (5.4) BS03 CA ? GO:0003009 ... P63317 38387550
    806416 8uzy:A (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    806417 8uzy:B (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    806418 8uzy:C (5.3) BS01 CA ? GO:0003009 ... P63317 38387550
    806419 8uzy:C (5.3) BS02 CA ? GO:0003009 ... P63317 38387550
    806420 8uzy:C (5.3) BS03 CA ? GO:0003009 ... P63317 38387550
    806421 8v01:A (5.5) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    806422 8v01:B (5.5) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    806423 8v01:C (5.5) BS01 CA ? GO:0003009 ... P63317 38387550
    806424 8v01:C (5.5) BS02 CA ? GO:0003009 ... P63317 38387550
    806425 8v01:C (5.5) BS03 CA ? GO:0003009 ... P63317 38387550
    806426 8v02:D (2.9) BS01 JZ0 N/A GO:0004984 ... Q177X3 38870275
    806427 8v04:B (1.58) BS01 GBS 3.4.21.122 GO:0004252 ... O15393 N/A
    806428 8v05:A (2.08) BS01 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    806429 8v05:A (2.08) BS02 CYS 3.1.16.1 GO:0003824 ... O35405 38537643
    806430 8v06:B (2.73) BS01 BMA 3.1.16.1 GO:0003824 ... O35405 38537643
    806431 8v06:B (2.73) BS02 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    806432 8v07:B (1.99) BS01 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    806433 8v07:B (1.99) BS02 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    806434 8v07:C (1.99) BS01 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    806435 8v08:A (3.0) BS01 dna 3.1.16.1 GO:0003824 ... Q96BZ4 38537643
    806436 8v08:B (3.0) BS01 dna 3.1.16.1 GO:0003824 ... Q96BZ4 38537643
    806437 8v0i:A (5.8) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    806438 8v0i:B (5.8) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    806439 8v0i:C (5.8) BS01 CA ? GO:0003009 ... P63317 38387550
    806440 8v0i:C (5.8) BS02 CA ? GO:0003009 ... P63317 38387550
    806441 8v0i:C (5.8) BS03 CA ? GO:0003009 ... P63317 38387550
    806442 8v0k:A (5.2) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    806443 8v0k:B (5.2) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    806444 8v0k:C (5.2) BS01 CA ? GO:0003009 ... P63317 38387550
    806445 8v0k:C (5.2) BS02 CA ? GO:0003009 ... P63317 38387550
    806446 8v0k:C (5.2) BS03 CA ? GO:0003009 ... P63317 38387550
    806447 8v0y:A (7.0) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    806448 8v0y:B (7.0) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    806449 8v14:A (1.9) BS01 CA ? GO:0046872 ... G5EEF9 38265937
    806450 8v14:B (1.9) BS01 CA ? GO:0046872 ... G5EEF9 38265937
    806451 8v15:A (2.4) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    806452 8v15:A (2.4) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    806453 8v15:A (2.4) BS03 CNA 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    806454 8v15:C (2.4) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    806455 8v15:C (2.4) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    806456 8v15:C (2.4) BS03 Y4T 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    806457 8v15:C (2.4) BS04 CNA 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    806458 8v1f:B (2.19) BS01 7R8 3.4.21.122 GO:0004252 ... O15393 N/A
    806459 8v1f:C (2.19) BS01 FUC 3.4.21.122 GO:0016020 ... O15393 N/A
    806460 8v1f:D (2.19) BS01 7R8 3.4.21.122 GO:0004252 ... O15393 N/A
    806461 8v24:A (3.6) BS01 ZN ? GO:0005506 ... P0AB59 38635633
    806462 8v24:B (3.6) BS01 24G 3.5.1.108 GO:0006796 ... P0A726 38635633
    806463 8v24:B (3.6) BS02 ZN 3.5.1.108 GO:0006796 ... P0A726 38635633
    806464 8v24:C (3.6) BS01 ZN ? GO:0005506 ... P0AB59 38635633
    806465 8v24:D (3.6) BS01 24G 3.5.1.108 GO:0006796 ... P0A726 38635633
    806466 8v24:D (3.6) BS02 ZN 3.5.1.108 GO:0006796 ... P0A726 38635633
    806467 8v2k:A (1.81) BS01 F0G 4.1.99.1 GO:0006520 ... P28796 N/A
    806468 8v2k:B (1.81) BS01 PLI 4.1.99.1 GO:0006520 ... P28796 N/A
    806469 8v2k:C (1.81) BS01 PLI 4.1.99.1 GO:0006520 ... P28796 N/A
    806470 8v2k:D (1.81) BS01 F0G 4.1.99.1 GO:0006520 ... P28796 N/A
    806471 8v2n:A (1.74) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    806472 8v2n:A (1.74) BS02 CNA 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    806473 8v2n:A (1.74) BS03 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    806474 8v2o:A (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    806475 8v2o:B (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    806476 8v2o:C (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    806477 8v2o:D (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    806478 8v2o:E (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    806479 8v2t:A (1.402) BS01 XLR 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    806480 8v2t:A (1.402) BS02 ZN 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    806481 8v2y:A (2.86) BS01 FMN ? GO:0000166 ... Q6N7Y7 38417793
    806482 8v2y:B (2.86) BS01 FMN ? GO:0000166 ... Q6N7Y7 38417793
    806483 8v2z:A (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    806484 8v2z:B (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    806485 8v2z:C (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    806486 8v2z:D (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    806487 8v2z:E (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    806488 8v30:A (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    806489 8v30:A (2.54) BS02 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    806490 8v30:B (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    806491 8v30:B (2.54) BS02 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    806492 8v30:B (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    806493 8v30:C (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    806494 8v30:C (2.54) BS02 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    806495 8v30:C (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    806496 8v30:D (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    806497 8v30:D (2.54) BS02 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    806498 8v30:D (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    806499 8v30:E (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    806500 8v30:E (2.54) BS02 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    806501 8v30:E (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    806502 8v31:A (2.65) BS01 MG N/A GO:0016787 ... A0A1Y3R144 N/A
    806503 8v31:C (2.65) BS01 MG N/A GO:0016787 ... A0A1Y3R144 N/A
    806504 8v3d:D (2.95) BS01 A1AFC N/A GO:0004984 ... A0A1S4GFY3 38870275
    806505 8v3k:A (1.47) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 38420671
    806506 8v3k:A (1.47) BS02 DPO 4.2.3.37 GO:0016829 ... Q9K499 38420671
    806507 8v3k:A (1.47) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 38420671
    806508 8v4a:A (1.96) BS01 YAE 4.1.99.1 GO:0006520 ... P28796 N/A
    806509 8v4a:B (1.96) BS01 YAR 4.1.99.1 GO:0006520 ... P28796 N/A
    806510 8v4a:C (1.96) BS01 YAE 4.1.99.1 GO:0006520 ... P28796 N/A
    806511 8v4a:D (1.96) BS01 YAR 4.1.99.1 GO:0006520 ... P28796 N/A
    806512 8v4g:A (2.0) BS01 NAP ? GO:0000166 ... A0A0U3AP28 38386885
    806513 8v4g:A (2.0) BS02 CDP ? GO:0000166 ... A0A0U3AP28 38386885
    806514 8v4g:B (2.0) BS01 NAP ? GO:0000166 ... A0A0U3AP28 38386885
    806515 8v4g:B (2.0) BS02 CDP ? GO:0000166 ... A0A0U3AP28 38386885
    806516 8v4h:A (2.2) BS01 YCX ? GO:0000166 ... A0A0U3AP28 38386885
    806517 8v4h:B (2.2) BS01 YCX ? GO:0000166 ... A0A0U3AP28 38386885
    806518 8v4h:B (2.2) BS02 PO4 ? GO:0000166 ... A0A0U3AP28 38386885
    806519 8v4j:A (1.31) BS01 J7D 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    806520 8v4j:A (1.31) BS02 ZN 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    806521 8v4k:A (3.1) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    806522 8v4k:B (3.1) BS01 G2P N/A GO:0000226 ... P02554 39020174
    806523 8v4k:C (3.1) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    806524 8v4k:D (3.1) BS01 G2P N/A GO:0000226 ... P02554 39020174
    806525 8v4l:A (2.9) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    806526 8v4l:B (2.9) BS01 G2P N/A GO:0000226 ... P02554 39020174
    806527 8v4l:C (2.9) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    806528 8v4l:D (2.9) BS01 G2P N/A GO:0000226 ... P02554 39020174
    806529 8v4m:A (3.0) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    806530 8v4m:B (3.0) BS01 G2P N/A GO:0000226 ... P02554 39020174
    806531 8v4m:C (3.0) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    806532 8v4m:D (3.0) BS01 G2P N/A GO:0000226 ... P02554 39020174
    806533 8v4o:A (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    806534 8v4o:B (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    806535 8v4o:C (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    806536 8v4p:A (2.3) BS01 WPO 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    806537 8v4p:A (2.3) BS02 WPO 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    806538 8v4p:B (2.3) BS01 WPO 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    806539 8v4p:C (2.3) BS01 WPO 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    806540 8v4p:C (2.3) BS02 WPO 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    806541 8v4r:A (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    806542 8v4r:A (2.7) BS02 COA 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    806543 8v4r:B (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    806544 8v4r:B (2.7) BS02 COA 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    806545 8v4r:C (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    806546 8v4r:C (2.7) BS02 COA 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    806547 8v4u:A (1.819) BS01 YDL 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38687966
    806548 8v4u:B (1.819) BS01 YDL 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38687966
    806549 8v4x:A (2.486) BS01 peptide 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    806550 8v4x:A (2.486) BS02 peptide 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    806551 8v4x:A (2.486) BS03 peptide 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    806552 8v4x:A (2.486) BS04 A1AAB 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    806553 8v4x:B (2.486) BS01 peptide 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    806554 8v4x:B (2.486) BS02 A1AAB 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    806555 8v4x:C (2.486) BS01 peptide 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    806556 8v4x:C (2.486) BS02 A1AAB 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    806557 8v4x:D (2.486) BS01 peptide 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    806558 8v4x:D (2.486) BS02 A1AAB 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    806559 8v4x:E (2.486) BS01 peptide 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    806560 8v4x:F (2.486) BS01 peptide 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    806561 8v4y:A (2.8) BS01 dna ? GO:0000786 ... P84233 38472177
    806562 8v4y:A (2.8) BS02 dna ? GO:0000786 ... P84233 38472177
    806563 8v4y:B (2.8) BS01 dna ? GO:0000786 ... P62799 38472177
    806564 8v4y:B (2.8) BS02 dna ? GO:0000786 ... P62799 38472177
    806565 8v4y:C (2.8) BS01 dna ? GO:0000786 ... P06897 38472177
    806566 8v4y:C (2.8) BS02 dna ? GO:0000786 ... P06897 38472177
    806567 8v4y:D (2.8) BS01 dna ? GO:0000786 ... P02281 38472177
    806568 8v4y:D (2.8) BS02 dna ? GO:0000786 ... P02281 38472177
    806569 8v4y:E (2.8) BS01 dna ? GO:0000786 ... P84233 38472177
    806570 8v4y:E (2.8) BS02 dna ? GO:0000786 ... P84233 38472177
    806571 8v4y:F (2.8) BS01 dna ? GO:0000786 ... P62799 38472177
    806572 8v4y:G (2.8) BS01 dna ? GO:0000786 ... P06897 38472177
    806573 8v4y:G (2.8) BS02 dna ? GO:0000786 ... P06897 38472177
    806574 8v4y:H (2.8) BS01 dna ? GO:0000786 ... P02281 38472177
    806575 8v4y:H (2.8) BS02 dna ? GO:0000786 ... P02281 38472177
    806576 8v4y:W (2.8) BS01 dna 3.6.4.- GO:0000183 ... O60264 38472177
    806577 8v4y:W (2.8) BS02 dna 3.6.4.- GO:0000183 ... O60264 38472177
    806578 8v4y:W (2.8) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    806579 8v4y:W (2.8) BS04 BEF 3.6.4.- GO:0000183 ... O60264 38472177
    806580 8v54:A (4.1) BS01 dna N/A GO:0000262 ... P54098 38932681
    806581 8v54:A (4.1) BS02 dna N/A GO:0000262 ... P54098 38932681
    806582 8v55:A (4.2) BS01 dna N/A GO:0000262 ... P54098 38932681
    806583 8v55:A (4.2) BS02 dna N/A GO:0000262 ... P54098 38932681
    806584 8v5g:A (2.5) BS01 YDO 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    806585 8v5g:B (2.5) BS01 YDO 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    806586 8v5m:A (9.22) BS01 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806587 8v5m:A (9.22) BS02 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806588 8v5m:D (9.22) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    806589 8v5n:A (8.56) BS01 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806590 8v5n:A (8.56) BS02 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806591 8v5n:D (8.56) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    806592 8v5o:A (8.99) BS01 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806593 8v5o:A (8.99) BS02 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    806594 8v5o:D (8.99) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    806595 8v5r:A (3.0) BS01 dna N/A GO:0000262 ... P54098 38932681
    806596 8v5r:A (3.0) BS02 dna N/A GO:0000262 ... P54098 38932681
    806597 8v5r:A (3.0) BS03 MG N/A GO:0000262 ... P54098 38932681
    806598 8v5r:A (3.0) BS04 D3T N/A GO:0000262 ... P54098 38932681
    806599 8v5y:A (2.059) BS01 peptide ? GO:0003779 ... A0A1B2YLJ4 38662449
    806600 8v5y:B (2.059) BS01 peptide ? GO:0003779 ... A0A1B2YLJ4 38662449
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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