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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    805401 8ury:K (3.1) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    805402 8ury:K (3.1) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    805403 8ury:M (3.1) BS01 rna ? GO:0000028 ... P02359 39117885
    805404 8ury:M (3.1) BS02 rna ? GO:0000028 ... P02359 39117885
    805405 8ury:N (3.1) BS01 rna ? GO:0000028 ... C3SR12 39117885
    805406 8ury:O (3.1) BS01 rna ? GO:0000028 ... C3SRY2 39117885
    805407 8ury:P (3.1) BS01 rna ? GO:0000049 ... P0A7R5 39117885
    805408 8ury:Q (3.1) BS01 rna ? GO:0002181 ... P0A7R9 39117885
    805409 8ury:R (3.1) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    805410 8ury:T (3.1) BS01 rna ? GO:0000028 ... C3SSQ7 39117885
    805411 8ury:T (3.1) BS02 rna ? GO:0000028 ... C3SSQ7 39117885
    805412 8ury:U (3.1) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    805413 8ury:V (3.1) BS01 rna ? GO:0000028 ... C3SQY7 39117885
    805414 8ury:W (3.1) BS01 rna ? GO:0000028 ... C3SQW2 39117885
    805415 8ury:X (3.1) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    805416 8ury:X (3.1) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    805417 8ury:Y (3.1) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    805418 8ury:b (3.1) BS01 rna ? GO:0003735 ... P0A7M0 39117885
    805419 8ury:b (3.1) BS02 rna ? GO:0003735 ... P0A7M0 39117885
    805420 8ury:c (3.1) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    805421 8ury:e (3.1) BS01 rna ? GO:0005840 ... P0A7M8 39117885
    805422 8ury:f (3.1) BS01 rna ? GO:0005840 ... C3SR32 39117885
    805423 8ury:f (3.1) BS02 rna ? GO:0005840 ... C3SR32 39117885
    805424 8ury:g (3.1) BS01 rna ? GO:0005840 ... P0A7N0 39117885
    805425 8ury:h (3.1) BS01 rna ? GO:0000027 ... P60422 39117885
    805426 8ury:i (3.1) BS01 rna ? GO:0005840 ... C3TE02 39117885
    805427 8ury:j (3.1) BS01 rna ? GO:0000027 ... P60438 39117885
    805428 8ury:k (3.1) BS01 rna ? GO:0003735 ... C3SME7 39117885
    805429 8ury:l (3.1) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    805430 8ury:m (3.1) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    805431 8ury:n (3.1) BS01 rna ? GO:0000049 ... A0A140N5A3 39117885
    805432 8ury:n (3.1) BS02 rna ? GO:0000049 ... A0A140N5A3 39117885
    805433 8ury:n (3.1) BS03 rna ? GO:0000049 ... A0A140N5A3 39117885
    805434 8ury:o (3.1) BS01 rna ? GO:0003735 ... P0A7Q2 39117885
    805435 8ury:p (3.1) BS01 rna ? GO:0002181 ... C3SR17 39117885
    805436 8ury:q (3.1) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    805437 8ury:r (3.1) BS01 rna ? GO:0005840 ... C3SFP2 39117885
    805438 8ury:s (3.1) BS01 rna ? GO:0003729 ... P0AA12 39117885
    805439 8ury:t (3.1) BS01 rna ? GO:0003735 ... S1NW45 39117885
    805440 8ury:t (3.1) BS02 rna ? GO:0003735 ... S1NW45 39117885
    805441 8ury:u (3.1) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    805442 8ury:v (3.1) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    805443 8ury:v (3.1) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    805444 8ury:w (3.1) BS01 rna ? GO:0003735 ... C3SR72 39117885
    805445 8ury:x (3.1) BS01 rna ? GO:0005737 ... A0A828U007 39117885
    805446 8ury:x (3.1) BS02 rna ? GO:0005737 ... A0A828U007 39117885
    805447 8ury:y (3.1) BS01 rna ? GO:0003735 ... P0A7K8 39117885
    805448 8ury:z (3.1) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    805449 8us1:A (2.65) BS01 C8E N/A GO:0009279 ... Q9I0U1 38959031
    805450 8us1:A (2.65) BS02 C8E N/A GO:0009279 ... Q9I0U1 38959031
    805451 8us3:A (3.1) BS01 C8E N/A GO:0009279 ... Q9I0U1 38959031
    805452 8usf:A (1.45) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    805453 8usf:B (1.45) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    805454 8ush:A (1.32) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    805455 8ush:B (1.32) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    805456 8usj:A (1.6) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    805457 8usj:B (1.6) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    805458 8usj:C (1.6) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    805459 8usl:A (1.55) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    805460 8usl:B (1.55) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    805461 8usm:A (1.63) BS01 XC8 ? GO:0007155 ... P77588 38308631
    805462 8usm:B (1.63) BS01 XC8 ? GO:0007155 ... P77588 38308631
    805463 8usr:A (1.83) BS01 XCE ? GO:0002225 ... Q16552 38574366
    805464 8usr:A (1.83) BS02 XCE ? GO:0002225 ... Q16552 38574366
    805465 8usr:B (1.83) BS01 XCE ? GO:0002225 ... Q16552 38574366
    805466 8usr:B (1.83) BS02 XCE ? GO:0002225 ... Q16552 38574366
    805467 8usr:D (1.83) BS01 XCE ? GO:0002225 ... Q16552 38574366
    805468 8usr:D (1.83) BS02 XCE ? GO:0002225 ... Q16552 38574366
    805469 8uss:A (1.47) BS01 XCW ? GO:0002225 ... Q16552 38574366
    805470 8usu:A (2.97) BS01 NAD 1.1.1.316 GO:0000166 ... A0A8B8PVT3 38224521
    805471 8usu:B (2.97) BS01 NAD 1.1.1.316 GO:0000166 ... A0A8B8PVT3 38224521
    805472 8usw:A (4.23) BS01 DQC ? GO:0005216 ... Q05586 38598639
    805473 8usw:C (4.23) BS01 DQC ? GO:0005216 ... Q05586 38598639
    805474 8ut1:A (2.3) BS01 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805475 8ut1:A (2.3) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805476 8ut1:A (2.3) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805477 8ut1:A (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805478 8ut1:B (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805479 8ut1:B (2.3) BS02 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805480 8ut1:B (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805481 8ut1:B (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805482 8ut1:C (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805483 8ut1:C (2.3) BS02 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805484 8ut1:C (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805485 8ut1:C (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805486 8ut1:D (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805487 8ut1:D (2.3) BS02 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805488 8ut1:D (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805489 8ut1:D (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805490 8ut1:E (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805491 8ut1:E (2.3) BS02 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805492 8ut1:E (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805493 8ut1:E (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805494 8utb:A (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805495 8utb:A (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805496 8utb:A (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805497 8utb:A (2.3) BS04 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805498 8utb:A (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805499 8utb:B (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805500 8utb:B (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805501 8utb:B (2.3) BS03 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805502 8utb:B (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805503 8utb:B (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805504 8utb:C (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805505 8utb:C (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805506 8utb:C (2.3) BS03 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805507 8utb:C (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805508 8utb:C (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805509 8utb:D (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805510 8utb:D (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805511 8utb:D (2.3) BS03 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805512 8utb:D (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805513 8utb:D (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805514 8utb:E (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805515 8utb:E (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805516 8utb:E (2.3) BS03 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805517 8utb:E (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805518 8utb:E (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    805519 8ute:A (1.45) BS01 XKQ 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38365209
    805520 8utl:A (1.56) BS01 peptide 3.4.21.4 GO:0004175 ... P00760 38306609
    805521 8utl:A (1.56) BS02 CA 3.4.21.4 GO:0004175 ... P00760 38306609
    805522 8utn:A (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805523 8utn:B (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    805524 8utn:B (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    805525 8utn:E (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805526 8utn:I (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    805527 8utn:I (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    805528 8utn:S (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805529 8uto:A (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805530 8uto:B (3.2) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    805531 8uto:B (3.2) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    805532 8uto:E (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805533 8uto:I (3.2) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    805534 8uto:I (3.2) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    805535 8uto:S (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805536 8utp:A (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805537 8utp:B (3.2) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    805538 8utp:B (3.2) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    805539 8utp:E (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805540 8utp:I (3.2) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    805541 8utp:I (3.2) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    805542 8utp:S (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805543 8utq:A (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805544 8utq:B (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    805545 8utq:B (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    805546 8utq:E (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805547 8utq:I (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    805548 8utq:I (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    805549 8utr:A (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805550 8utr:A (3.3) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805551 8utr:B (3.3) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    805552 8utr:B (3.3) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    805553 8uts:A (2.7) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805554 8uts:B (2.7) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    805555 8uts:B (2.7) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    805556 8utt:A (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805557 8utt:B (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    805558 8utt:B (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    805559 8utt:E (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805560 8utt:I (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    805561 8utt:I (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    805562 8utt:S (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805563 8utu:A (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805564 8utu:B (3.0) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    805565 8utu:B (3.0) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    805566 8utu:E (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805567 8utv:A (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805568 8utv:A (3.0) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805569 8utv:B (3.0) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    805570 8utv:B (3.0) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    805571 8utv:E (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805572 8utv:E (3.0) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805573 8utw:A (3.4) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805574 8utw:A (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805575 8utw:B (3.4) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    805576 8utw:B (3.4) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    805577 8uty:A (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805578 8uty:B (3.3) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    805579 8uty:B (3.3) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    805580 8uty:E (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805581 8uty:I (3.3) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    805582 8uty:I (3.3) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    805583 8uty:S (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    805584 8uu4:1 (3.0) BS01 rna ? GO:0003735 ... A0A0U5AGL9 38407413
    805585 8uu4:2 (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    805586 8uu4:3 (3.0) BS01 rna ? GO:0003735 ... A0A0U4MT39 38407413
    805587 8uu4:4 (3.0) BS01 rna ? GO:0003735 ... A0A660JNN0 38407413
    805588 8uu4:4 (3.0) BS02 ZN ? GO:0003735 ... A0A660JNN0 38407413
    805589 8uu4:5 (3.0) BS01 rna ? GO:0003735 ... A0A660JRA4 38407413
    805590 8uu4:5 (3.0) BS02 ZN ? GO:0003735 ... A0A660JRA4 38407413
    805591 8uu4:6 (3.0) BS01 rna ? GO:0003735 ... A0A660JKZ6 38407413
    805592 8uu4:7 (3.0) BS01 rna ? GO:0003735 ... A0A660JIB9 38407413
    805593 8uu4:8 (3.0) BS01 rna ? GO:0003735 ... A0A0U5AM58 38407413
    805594 8uu4:8 (3.0) BS02 ZN ? GO:0003735 ... A0A0U5AM58 38407413
    805595 8uu4:C (3.0) BS01 rna ? GO:0002181 ... A0A0U5A742 38407413
    805596 8uu4:D (3.0) BS01 rna ? GO:0003735 ... A0A0U5ADD0 38407413
    805597 8uu4:E (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSH7 38407413
    805598 8uu4:F (3.0) BS01 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    805599 8uu4:F (3.0) BS02 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    805600 8uu4:G (3.0) BS01 rna ? GO:0002181 ... A0A0U5ALU0 38407413
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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