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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    805201 8ur0:m (3.4) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    805202 8ur0:o (3.4) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    805203 8ur0:p (3.4) BS01 rna ? GO:0002181 ... C3SR17 39117885
    805204 8ur0:q (3.4) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    805205 8ur0:t (3.4) BS01 rna ? GO:0003735 ... S1NW45 39117885
    805206 8ur0:t (3.4) BS02 rna ? GO:0003735 ... S1NW45 39117885
    805207 8ur0:u (3.4) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    805208 8ur0:v (3.4) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    805209 8ur0:v (3.4) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    805210 8ur0:z (3.4) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    805211 8ur2:B (1.9) BS01 PYR 5.3.2.1
    5.3.3.12    		 GO:0005125 ... A2DXT4 N/A
    805212 8ur9:A (2.3) BS01 XEK 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38621119
    805213 8urb:A (3.4) BS01 rna 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0003723 ... U6BRU0 36993498
    805214 8urb:A (3.4) BS02 rna 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0003723 ... U6BRU0 36993498
    805215 8urb:A (3.4) BS03 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0003723 ... U6BRU0 36993498
    805216 8urb:A (3.4) BS04 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0003723 ... U6BRU0 36993498
    805217 8urh:1 (5.7) BS01 rna ? GO:0002181 ... P61175 39117885
    805218 8urh:9 (5.7) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    805219 8urh:AA (5.7) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    805220 8urh:AA (5.7) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    805221 8urh:AA (5.7) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    805222 8urh:AB (5.7) BS01 dna ? GO:0001073 ... C3SK02 39117885
    805223 8urh:AE (5.7) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805224 8urh:AE (5.7) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805225 8urh:AE (5.7) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805226 8urh:AE (5.7) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805227 8urh:AE (5.7) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805228 8urh:AE (5.7) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805229 8urh:AF (5.7) BS01 rna 2.7.7.6 GO:0000345 ... P0A800 39117885
    805230 8urh:C (5.7) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    805231 8urh:E (5.7) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    805232 8urh:F (5.7) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    805233 8urh:G (5.7) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    805234 8urh:I (5.7) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    805235 8urh:I (5.7) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    805236 8urh:J (5.7) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    805237 8urh:K (5.7) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    805238 8urh:K (5.7) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    805239 8urh:L (5.7) BS01 rna ? GO:0002181 ... P02358 39117885
    805240 8urh:M (5.7) BS01 rna ? GO:0000028 ... P02359 39117885
    805241 8urh:M (5.7) BS02 rna ? GO:0000028 ... P02359 39117885
    805242 8urh:Q (5.7) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    805243 8urh:R (5.7) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    805244 8urh:U (5.7) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    805245 8urh:X (5.7) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    805246 8urh:X (5.7) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    805247 8urh:Y (5.7) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    805248 8urh:b (5.7) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    805249 8urh:b (5.7) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    805250 8urh:c (5.7) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    805251 8urh:g (5.7) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    805252 8urh:h (5.7) BS01 rna ? GO:0000027 ... P60422 39117885
    805253 8urh:j (5.7) BS01 rna ? GO:0000027 ... P60438 39117885
    805254 8urh:l (5.7) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    805255 8urh:m (5.7) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    805256 8urh:o (5.7) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    805257 8urh:p (5.7) BS01 rna ? GO:0002181 ... C3SR17 39117885
    805258 8urh:q (5.7) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    805259 8urh:t (5.7) BS01 rna ? GO:0003735 ... S1NW45 39117885
    805260 8urh:t (5.7) BS02 rna ? GO:0003735 ... S1NW45 39117885
    805261 8urh:u (5.7) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    805262 8urh:v (5.7) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    805263 8urh:v (5.7) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    805264 8urh:z (5.7) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    805265 8uri:1 (5.3) BS01 rna ? GO:0002181 ... P61175 39117885
    805266 8uri:9 (5.3) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    805267 8uri:AA (5.3) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    805268 8uri:AA (5.3) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    805269 8uri:AA (5.3) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    805270 8uri:AB (5.3) BS01 dna ? GO:0001073 ... C3SK02 39117885
    805271 8uri:AE (5.3) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805272 8uri:AE (5.3) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805273 8uri:AE (5.3) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805274 8uri:AE (5.3) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805275 8uri:AE (5.3) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805276 8uri:AE (5.3) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805277 8uri:C (5.3) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    805278 8uri:E (5.3) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    805279 8uri:F (5.3) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    805280 8uri:G (5.3) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    805281 8uri:I (5.3) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    805282 8uri:I (5.3) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    805283 8uri:J (5.3) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    805284 8uri:K (5.3) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    805285 8uri:K (5.3) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    805286 8uri:L (5.3) BS01 rna ? GO:0002181 ... P02358 39117885
    805287 8uri:M (5.3) BS01 rna ? GO:0000028 ... P02359 39117885
    805288 8uri:M (5.3) BS02 rna ? GO:0000028 ... P02359 39117885
    805289 8uri:Q (5.3) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    805290 8uri:R (5.3) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    805291 8uri:U (5.3) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    805292 8uri:X (5.3) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    805293 8uri:X (5.3) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    805294 8uri:Y (5.3) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    805295 8uri:b (5.3) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    805296 8uri:b (5.3) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    805297 8uri:c (5.3) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    805298 8uri:g (5.3) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    805299 8uri:h (5.3) BS01 rna ? GO:0000027 ... P60422 39117885
    805300 8uri:j (5.3) BS01 rna ? GO:0000027 ... P60438 39117885
    805301 8uri:l (5.3) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    805302 8uri:m (5.3) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    805303 8uri:o (5.3) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    805304 8uri:p (5.3) BS01 rna ? GO:0002181 ... C3SR17 39117885
    805305 8uri:q (5.3) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    805306 8uri:t (5.3) BS01 rna ? GO:0003735 ... S1NW45 39117885
    805307 8uri:t (5.3) BS02 rna ? GO:0003735 ... S1NW45 39117885
    805308 8uri:u (5.3) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    805309 8uri:v (5.3) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    805310 8uri:v (5.3) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    805311 8uri:z (5.3) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    805312 8urq:A (3.3) BS01 dna N/A GO:0000228 ... P23179 N/A
    805313 8urq:A (3.3) BS02 MG N/A GO:0000228 ... P23179 N/A
    805314 8urq:B (3.3) BS01 dna N/A GO:0000794 ... Q02721 N/A
    805315 8urq:F (3.3) BS01 dna N/A GO:0000794 ... P33323 N/A
    805316 8uru:A (3.7) BS01 dna N/A GO:0000228 ... P23179 N/A
    805317 8uru:A (3.7) BS02 MG N/A GO:0000228 ... P23179 N/A
    805318 8uru:F (3.7) BS01 dna N/A GO:0000794 ... P33323 N/A
    805319 8urw:C (2.79) BS01 dna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    805320 8urw:C (2.79) BS02 dna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    805321 8urw:C (2.79) BS03 rna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    805322 8urw:D (2.79) BS01 dna 2.7.7.6 GO:0000287 ... P42079 38354263
    805323 8urw:D (2.79) BS02 dna 2.7.7.6 GO:0000287 ... P42079 38354263
    805324 8urw:D (2.79) BS03 rna 2.7.7.6 GO:0000287 ... P42079 38354263
    805325 8urw:D (2.79) BS04 MG 2.7.7.6 GO:0000287 ... P42079 38354263
    805326 8urw:D (2.79) BS05 ZN 2.7.7.6 GO:0000287 ... P42079 38354263
    805327 8urw:G (2.79) BS01 dna ? GO:0005829 ... Q31QK2 38354263
    805328 8urw:Z (2.79) BS01 dna 2.7.7.6 GO:0000428 ... Q31N15 38354263
    805329 8urw:Z (2.79) BS02 ZN 2.7.7.6 GO:0000428 ... Q31N15 38354263
    805330 8urw:Z (2.79) BS03 CTP 2.7.7.6 GO:0000428 ... Q31N15 38354263
    805331 8urx:1 (6.6) BS01 rna ? GO:0002181 ... P61175 39117885
    805332 8urx:9 (6.6) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    805333 8urx:AA (6.6) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    805334 8urx:AA (6.6) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    805335 8urx:AA (6.6) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    805336 8urx:AB (6.6) BS01 dna ? GO:0001073 ... C3SK02 39117885
    805337 8urx:AE (6.6) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805338 8urx:AE (6.6) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805339 8urx:AE (6.6) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805340 8urx:AE (6.6) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805341 8urx:AE (6.6) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805342 8urx:AE (6.6) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805343 8urx:C (6.6) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    805344 8urx:E (6.6) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    805345 8urx:F (6.6) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    805346 8urx:G (6.6) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    805347 8urx:I (6.6) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    805348 8urx:I (6.6) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    805349 8urx:J (6.6) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    805350 8urx:K (6.6) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    805351 8urx:K (6.6) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    805352 8urx:L (6.6) BS01 rna ? GO:0002181 ... P02358 39117885
    805353 8urx:M (6.6) BS01 rna ? GO:0000028 ... P02359 39117885
    805354 8urx:M (6.6) BS02 rna ? GO:0000028 ... P02359 39117885
    805355 8urx:Q (6.6) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    805356 8urx:R (6.6) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    805357 8urx:U (6.6) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    805358 8urx:X (6.6) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    805359 8urx:X (6.6) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    805360 8urx:Y (6.6) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    805361 8urx:b (6.6) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    805362 8urx:b (6.6) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    805363 8urx:c (6.6) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    805364 8urx:g (6.6) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    805365 8urx:h (6.6) BS01 rna ? GO:0000027 ... P60422 39117885
    805366 8urx:j (6.6) BS01 rna ? GO:0000027 ... P60438 39117885
    805367 8urx:l (6.6) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    805368 8urx:m (6.6) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    805369 8urx:o (6.6) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    805370 8urx:p (6.6) BS01 rna ? GO:0002181 ... C3SR17 39117885
    805371 8urx:q (6.6) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    805372 8urx:t (6.6) BS01 rna ? GO:0003735 ... S1NW45 39117885
    805373 8urx:t (6.6) BS02 rna ? GO:0003735 ... S1NW45 39117885
    805374 8urx:u (6.6) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    805375 8urx:v (6.6) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    805376 8urx:v (6.6) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    805377 8urx:z (6.6) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    805378 8ury:0 (3.1) BS01 rna ? GO:0003735 ... C3SSG2 39117885
    805379 8ury:1 (3.1) BS01 rna ? GO:0002181 ... P61175 39117885
    805380 8ury:2 (3.1) BS01 rna ? GO:0000027 ... C3SQV2 39117885
    805381 8ury:3 (3.1) BS01 rna ? GO:0005829 ... C3SQZ7 39117885
    805382 8ury:4 (3.1) BS01 rna ? GO:0000027 ... P68919 39117885
    805383 8ury:9 (3.1) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    805384 8ury:AA (3.1) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    805385 8ury:AA (3.1) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    805386 8ury:AA (3.1) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    805387 8ury:AB (3.1) BS01 dna ? GO:0001073 ... C3SK02 39117885
    805388 8ury:AE (3.1) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805389 8ury:AE (3.1) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805390 8ury:AE (3.1) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805391 8ury:AE (3.1) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805392 8ury:AE (3.1) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805393 8ury:AE (3.1) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    805394 8ury:C (3.1) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    805395 8ury:E (3.1) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    805396 8ury:F (3.1) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    805397 8ury:G (3.1) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    805398 8ury:I (3.1) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    805399 8ury:I (3.1) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    805400 8ury:J (3.1) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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