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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    794601 8sfr:A (3.5) BS01 rna N/A GO:0003677 ... U2UMQ6 N/A
    794602 8sfr:A (3.5) BS02 dna N/A GO:0003677 ... U2UMQ6 N/A
    794603 8sfr:A (3.5) BS03 dna N/A GO:0003677 ... U2UMQ6 N/A
    794604 8sft:A (2.75) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    794605 8sft:A (2.75) BS02 KMP ? GO:0000166 ... T1KUK4 N/A
    794606 8sft:B (2.75) BS01 KMP ? GO:0000166 ... T1KUK4 N/A
    794607 8sft:B (2.75) BS02 UDP ? GO:0000166 ... T1KUK4 N/A
    794608 8sft:C (2.75) BS01 KMP ? GO:0000166 ... T1KUK4 N/A
    794609 8sft:C (2.75) BS02 UDP ? GO:0000166 ... T1KUK4 N/A
    794610 8sft:D (2.75) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    794611 8sfu:A (1.8) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    794612 8sfu:A (1.8) BS02 ZWN ? GO:0000166 ... T1KUK4 N/A
    794613 8sfu:B (1.8) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    794614 8sfu:B (1.8) BS02 ZWN ? GO:0000166 ... T1KUK4 N/A
    794615 8sfw:A (2.75) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    794616 8sfw:A (2.75) BS02 QUE ? GO:0000166 ... T1KUK4 N/A
    794617 8sfy:A (2.35) BS01 UPG ? GO:0000166 ... T1KUK4 N/A
    794618 8sg0:A (1.25) BS01 NAD N/A GO:0047918 ... N/A 38224521
    794619 8sg0:A (1.25) BS02 GDD N/A GO:0047918 ... N/A 38224521
    794620 8sg0:A (1.25) BS03 GDC N/A GO:0047918 ... N/A 38224521
    794621 8sg0:B (1.25) BS01 NAD N/A GO:0047918 ... N/A 38224521
    794622 8sg0:B (1.25) BS02 GDD N/A GO:0047918 ... N/A 38224521
    794623 8sg0:B (1.25) BS03 GDC N/A GO:0047918 ... N/A 38224521
    794624 8sg1:R (2.94) BS01 peptide ? GO:0004930 ... Q99788 38055679
    794625 8sg1:R (2.94) BS02 CLR ? GO:0004930 ... Q99788 38055679
    794626 8sg2:A (-1.00) BS01 peptide 5.2.1.8 GO:0000413 ... Q13526 38687676
    794627 8sg5:A (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    794628 8sg5:A (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794629 8sg5:A (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794630 8sg5:A (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794631 8sg5:B (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    794632 8sg5:B (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794633 8sg5:B (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794634 8sg5:B (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794635 8sg5:C (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    794636 8sg5:C (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794637 8sg5:C (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794638 8sg5:C (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794639 8sg5:D (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    794640 8sg5:D (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794641 8sg5:D (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794642 8sg5:D (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794643 8sg5:E (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    794644 8sg5:E (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794645 8sg5:E (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794646 8sg5:E (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794647 8sg5:F (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    794648 8sg5:F (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794649 8sg5:F (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794650 8sg5:F (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794651 8sg5:G (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    794652 8sg5:G (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794653 8sg5:G (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794654 8sg5:G (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794655 8sg5:H (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    794656 8sg5:H (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794657 8sg5:H (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794658 8sg5:H (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    794659 8sg7:B (2.4) BS01 peptide ? GO:0005737 ... P52293 38441555
    794660 8sg8:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    794661 8sg8:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    794662 8sg8:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    794663 8sg8:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    794664 8sg8:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    794665 8sg8:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    794666 8sg8:E (3.0) BS01 peptide ? GO:0003730 ... P48643 37852256
    794667 8sg8:E (3.0) BS02 ADP ? GO:0003730 ... P48643 37852256
    794668 8sg8:E (3.0) BS03 AF3 ? GO:0003730 ... P48643 37852256
    794669 8sg8:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    794670 8sg8:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    794671 8sg8:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    794672 8sg8:H (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    794673 8sg8:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    794674 8sg8:Q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    794675 8sg8:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    794676 8sg8:Z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    794677 8sg8:a (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    794678 8sg8:a (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    794679 8sg8:b (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    794680 8sg8:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    794681 8sg8:d (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    794682 8sg8:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    794683 8sg8:e (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    794684 8sg8:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    794685 8sg8:g (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    794686 8sg8:g (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    794687 8sg8:h (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    794688 8sg8:h (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    794689 8sg8:q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    794690 8sg8:q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    794691 8sg8:z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    794692 8sg8:z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    794693 8sg9:A (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    794694 8sg9:A (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    794695 8sg9:B (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    794696 8sg9:B (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    794697 8sg9:D (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    794698 8sg9:D (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    794699 8sg9:E (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    794700 8sg9:E (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    794701 8sg9:G (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    794702 8sg9:G (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    794703 8sg9:H (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    794704 8sg9:H (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    794705 8sg9:Q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    794706 8sg9:Q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    794707 8sg9:Z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    794708 8sg9:Z (2.9) BS02 MG ? GO:0003723 ... P40227 37852256
    794709 8sg9:Z (2.9) BS03 AF3 ? GO:0003723 ... P40227 37852256
    794710 8sg9:a (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    794711 8sg9:a (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    794712 8sg9:b (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    794713 8sg9:b (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    794714 8sg9:d (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    794715 8sg9:d (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    794716 8sg9:e (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    794717 8sg9:e (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    794718 8sg9:g (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    794719 8sg9:g (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    794720 8sg9:h (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    794721 8sg9:h (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    794722 8sg9:q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    794723 8sg9:q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    794724 8sg9:z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    794725 8sg9:z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    794726 8sgb:A (2.80002) BS01 FO4 ? GO:0003677 ... P15813 N/A
    794727 8sgc:A (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    794728 8sgc:A (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    794729 8sgc:B (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    794730 8sgc:B (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    794731 8sgc:D (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    794732 8sgc:D (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    794733 8sgc:E (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    794734 8sgc:E (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    794735 8sgc:G (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    794736 8sgc:G (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    794737 8sgc:H (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    794738 8sgc:H (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    794739 8sgc:Q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    794740 8sgc:Q (2.9) BS02 MG ? GO:0002199 ... P50990 37852256
    794741 8sgc:Q (2.9) BS03 AF3 ? GO:0002199 ... P50990 37852256
    794742 8sgc:Z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    794743 8sgc:Z (2.9) BS02 MG ? GO:0003723 ... P40227 37852256
    794744 8sgc:Z (2.9) BS03 AF3 ? GO:0003723 ... P40227 37852256
    794745 8sgc:a (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    794746 8sgc:a (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    794747 8sgc:b (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    794748 8sgc:b (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    794749 8sgc:d (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    794750 8sgc:d (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    794751 8sgc:e (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    794752 8sgc:e (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    794753 8sgc:g (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    794754 8sgc:g (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    794755 8sgc:h (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    794756 8sgc:h (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    794757 8sgc:q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    794758 8sgc:q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    794759 8sgc:z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    794760 8sgc:z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    794761 8sgd:A (2.66) BS01 GDP ? GO:0000144 ... P25342 37315820
    794762 8sgd:A (2.66) BS02 GTP ? GO:0000144 ... P25342 37315820
    794763 8sgd:B (2.66) BS01 GDP ? GO:0005525 ... P32457 37315820
    794764 8sgd:B (2.66) BS02 GTP ? GO:0005525 ... P32457 37315820
    794765 8sgd:C (2.66) BS01 GDP ? GO:0000144 ... P25342 37315820
    794766 8sgd:C (2.66) BS02 GTP ? GO:0000144 ... P25342 37315820
    794767 8sgd:D (2.66) BS01 GDP ? GO:0005525 ... P32457 37315820
    794768 8sgd:D (2.66) BS02 GTP ? GO:0005525 ... P32457 37315820
    794769 8sgh:A (3.17) BS01 peptide ? GO:0003723 ... Q92973 37279758
    794770 8sgi:A (2.9) BS01 EKY ? GO:0005432 ... P32418 N/A
    794771 8sgi:A (2.9) BS02 CA ? GO:0005432 ... P32418 N/A
    794772 8sgi:A (2.9) BS03 CA ? GO:0005432 ... P32418 N/A
    794773 8sgi:A (2.9) BS04 CA ? GO:0005432 ... P32418 N/A
    794774 8sgi:A (2.9) BS05 CA ? GO:0005432 ... P32418 N/A
    794775 8sgi:A (2.9) BS06 CA ? GO:0005432 ... P32418 N/A
    794776 8sgi:A (2.9) BS07 CA ? GO:0005432 ... P32418 N/A
    794777 8sgj:A (3.1) BS01 CA ? GO:0005432 ... P32418 37794011
    794778 8sgj:A (3.1) BS02 CA ? GO:0005432 ... P32418 37794011
    794779 8sgj:A (3.1) BS03 CA ? GO:0005432 ... P32418 37794011
    794780 8sgj:A (3.1) BS04 CA ? GO:0005432 ... P32418 37794011
    794781 8sgj:A (3.1) BS05 CA ? GO:0005432 ... P32418 37794011
    794782 8sgj:A (3.1) BS06 CA ? GO:0005432 ... P32418 37794011
    794783 8sgj:A (3.1) BS07 NA ? GO:0005432 ... P32418 37794011
    794784 8sgj:A (3.1) BS08 NA ? GO:0005432 ... P32418 37794011
    794785 8sgj:A (3.1) BS09 NA ? GO:0005432 ... P32418 37794011
    794786 8sgk:A (3.7) BS01 LBV 2.7.13.3 GO:0000156 ... Q9RZA4 N/A
    794787 8sgk:B (3.7) BS01 LBV 2.7.13.3 GO:0000156 ... Q9RZA4 N/A
    794788 8sgl:A (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    794789 8sgl:A (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    794790 8sgl:B (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    794791 8sgl:B (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    794792 8sgl:D (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    794793 8sgl:D (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    794794 8sgl:E (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    794795 8sgl:E (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    794796 8sgl:G (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    794797 8sgl:G (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    794798 8sgl:H (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    794799 8sgl:H (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    794800 8sgl:Q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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