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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    794401 8sf7:QG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794402 8sf7:QG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    794403 8sf7:QH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794404 8sf7:QH (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    794405 8sf7:QI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794406 8sf7:QJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794407 8sf7:QK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794408 8sf7:QL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794409 8sf7:QM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794410 8sf7:QN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794411 8sf7:RA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794412 8sf7:RB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794413 8sf7:RC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794414 8sf7:RD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794415 8sf7:RE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794416 8sf7:RF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794417 8sf7:RG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794418 8sf7:RH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794419 8sf7:RI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794420 8sf7:RJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794421 8sf7:RK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794422 8sf7:RL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794423 8sf7:RL (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    794424 8sf7:RM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794425 8sf7:RN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794426 8sf7:SA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794427 8sf7:SB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794428 8sf7:SB (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    794429 8sf7:SC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794430 8sf7:SD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794431 8sf7:SE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794432 8sf7:SF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794433 8sf7:SG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794434 8sf7:SH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794435 8sf7:SI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794436 8sf7:SJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794437 8sf7:SK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794438 8sf7:SL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794439 8sf7:SL (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    794440 8sf7:SM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794441 8sf7:SN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794442 8sf7:TA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794443 8sf7:TB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794444 8sf7:TC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794445 8sf7:TD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794446 8sf7:TE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794447 8sf7:TF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794448 8sf7:TG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794449 8sf7:TH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794450 8sf7:TI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794451 8sf7:TJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794452 8sf7:TK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794453 8sf7:TL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794454 8sf7:TM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794455 8sf7:TN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794456 8sf7:UA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794457 8sf7:UB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794458 8sf7:UC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794459 8sf7:UD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794460 8sf7:UE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794461 8sf7:UF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794462 8sf7:UG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794463 8sf7:UH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794464 8sf7:UI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794465 8sf7:UJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794466 8sf7:UJ (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    794467 8sf7:UK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794468 8sf7:UL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794469 8sf7:UL (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    794470 8sf7:UM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794471 8sf7:UN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794472 8sf7:VA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794473 8sf7:VB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794474 8sf7:VC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794475 8sf7:VD (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    794476 8sf7:VD (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    794477 8sf7:VE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794478 8sf7:VF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794479 8sf7:VG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794480 8sf7:VH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794481 8sf7:VI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794482 8sf7:VJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794483 8sf7:VK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794484 8sf7:VK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    794485 8sf7:VL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794486 8sf7:VM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794487 8sf7:VM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    794488 8sf7:VN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794489 8sf7:WA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794490 8sf7:WB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794491 8sf7:WC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794492 8sf7:WC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    794493 8sf7:WD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794494 8sf7:WE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794495 8sf7:WF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794496 8sf7:WG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794497 8sf7:WH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794498 8sf7:WI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794499 8sf7:WJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794500 8sf7:WK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794501 8sf7:WL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794502 8sf7:WM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794503 8sf7:WN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794504 8sf8:A (1.7) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 38330278
    794505 8sf8:A (1.7) BS02 ZWG 2.7.11.11 GO:0001669 ... P00517 38330278
    794506 8sf9:D (1.8) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794507 8sf9:D (1.8) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794508 8sfa:D (2.32) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794509 8sfa:D (2.32) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794510 8sfa:S (2.32) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794511 8sfa:S (2.32) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794512 8sfa:b (2.32) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794513 8sfa:b (2.32) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794514 8sfa:t (2.32) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794515 8sfa:t (2.32) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794516 8sfb:D (1.4) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794517 8sfb:D (1.4) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794518 8sfc:D (1.4) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794519 8sfc:D (1.4) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794520 8sfd:D (1.5) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794521 8sfd:D (1.5) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794522 8sfe:A (3.36) BS01 ADP ? GO:0000242 ... P17987 37852256
    794523 8sfe:B (3.36) BS01 ADP ? GO:0002199 ... P78371 37852256
    794524 8sfe:D (3.36) BS01 ADP ? GO:0002199 ... P50991 37852256
    794525 8sfe:E (3.36) BS01 ADP ? GO:0003730 ... P48643 37852256
    794526 8sfe:G (3.36) BS01 ADP ? GO:0002199 ... P49368 37852256
    794527 8sfe:H (3.36) BS01 ADP ? GO:0005515 ... Q99832 37852256
    794528 8sfe:Q (3.36) BS01 ADP ? GO:0002199 ... P50990 37852256
    794529 8sfe:Z (3.36) BS01 ADP ? GO:0003723 ... P40227 37852256
    794530 8sfe:a (3.36) BS01 ADP ? GO:0000242 ... P17987 37852256
    794531 8sfe:b (3.36) BS01 ADP ? GO:0002199 ... P78371 37852256
    794532 8sfe:d (3.36) BS01 ADP ? GO:0002199 ... P50991 37852256
    794533 8sfe:e (3.36) BS01 ADP ? GO:0003730 ... P48643 37852256
    794534 8sfe:g (3.36) BS01 ADP ? GO:0002199 ... P49368 37852256
    794535 8sfe:h (3.36) BS01 ADP ? GO:0005515 ... Q99832 37852256
    794536 8sfe:q (3.36) BS01 ADP ? GO:0002199 ... P50990 37852256
    794537 8sfe:z (3.36) BS01 ADP ? GO:0003723 ... P40227 37852256
    794538 8sff:A (3.2) BS01 ADP ? GO:0000242 ... P17987 37852256
    794539 8sff:A (3.2) BS02 AF3 ? GO:0000242 ... P17987 37852256
    794540 8sff:B (3.2) BS01 ADP ? GO:0002199 ... P78371 37852256
    794541 8sff:B (3.2) BS02 AF3 ? GO:0002199 ... P78371 37852256
    794542 8sff:D (3.2) BS01 ADP ? GO:0002199 ... P50991 37852256
    794543 8sff:D (3.2) BS02 AF3 ? GO:0002199 ... P50991 37852256
    794544 8sff:E (3.2) BS01 ADP ? GO:0003730 ... P48643 37852256
    794545 8sff:E (3.2) BS02 AF3 ? GO:0003730 ... P48643 37852256
    794546 8sff:G (3.2) BS01 ADP ? GO:0002199 ... P49368 37852256
    794547 8sff:G (3.2) BS02 AF3 ? GO:0002199 ... P49368 37852256
    794548 8sff:H (3.2) BS01 ADP ? GO:0005515 ... Q99832 37852256
    794549 8sff:H (3.2) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    794550 8sff:Q (3.2) BS01 ADP ? GO:0002199 ... P50990 37852256
    794551 8sff:Q (3.2) BS02 MG ? GO:0002199 ... P50990 37852256
    794552 8sff:Q (3.2) BS03 AF3 ? GO:0002199 ... P50990 37852256
    794553 8sff:Z (3.2) BS01 ADP ? GO:0003723 ... P40227 37852256
    794554 8sff:Z (3.2) BS02 AF3 ? GO:0003723 ... P40227 37852256
    794555 8sff:a (3.2) BS01 ADP ? GO:0000242 ... P17987 37852256
    794556 8sff:a (3.2) BS02 AF3 ? GO:0000242 ... P17987 37852256
    794557 8sff:b (3.2) BS01 ADP ? GO:0002199 ... P78371 37852256
    794558 8sff:b (3.2) BS02 AF3 ? GO:0002199 ... P78371 37852256
    794559 8sff:d (3.2) BS01 ADP ? GO:0002199 ... P50991 37852256
    794560 8sff:d (3.2) BS02 AF3 ? GO:0002199 ... P50991 37852256
    794561 8sff:e (3.2) BS01 ADP ? GO:0003730 ... P48643 37852256
    794562 8sff:e (3.2) BS02 AF3 ? GO:0003730 ... P48643 37852256
    794563 8sff:g (3.2) BS01 ADP ? GO:0002199 ... P49368 37852256
    794564 8sff:g (3.2) BS02 AF3 ? GO:0002199 ... P49368 37852256
    794565 8sff:h (3.2) BS01 ADP ? GO:0005515 ... Q99832 37852256
    794566 8sff:h (3.2) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    794567 8sff:q (3.2) BS01 ADP ? GO:0002199 ... P50990 37852256
    794568 8sff:q (3.2) BS02 AF3 ? GO:0002199 ... P50990 37852256
    794569 8sff:z (3.2) BS01 ADP ? GO:0003723 ... P40227 37852256
    794570 8sff:z (3.2) BS02 AF3 ? GO:0003723 ... P40227 37852256
    794571 8sfh:A (3.4) BS01 rna N/A GO:0003677 ... U2UMQ6 N/A
    794572 8sfh:A (3.4) BS02 dna N/A GO:0003677 ... U2UMQ6 N/A
    794573 8sfh:A (3.4) BS03 dna N/A GO:0003677 ... U2UMQ6 N/A
    794574 8sfi:A (3.5) BS01 rna N/A GO:0003677 ... U2UMQ6 N/A
    794575 8sfi:A (3.5) BS02 dna N/A GO:0003677 ... U2UMQ6 N/A
    794576 8sfi:A (3.5) BS03 dna N/A GO:0003677 ... U2UMQ6 N/A
    794577 8sfj:A (3.6) BS01 rna N/A GO:0003677 ... U2UMQ6 N/A
    794578 8sfj:A (3.6) BS02 dna N/A GO:0003677 ... U2UMQ6 N/A
    794579 8sfj:A (3.6) BS03 dna N/A GO:0003677 ... U2UMQ6 N/A
    794580 8sfk:D (1.4) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794581 8sfk:D (1.4) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794582 8sfl:A (3.3) BS01 rna N/A GO:0003677 ... U2UMQ6 N/A
    794583 8sfl:A (3.3) BS02 dna N/A GO:0003677 ... U2UMQ6 N/A
    794584 8sfl:A (3.3) BS03 dna N/A GO:0003677 ... U2UMQ6 N/A
    794585 8sfm:D (1.5) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794586 8sfm:D (1.5) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794587 8sfn:A (3.3) BS01 rna N/A GO:0003677 ... U2UMQ6 N/A
    794588 8sfn:A (3.3) BS02 dna N/A GO:0003677 ... U2UMQ6 N/A
    794589 8sfn:A (3.3) BS03 dna N/A GO:0003677 ... U2UMQ6 N/A
    794590 8sfo:A (3.3) BS01 rna N/A GO:0003677 ... U2UMQ6 N/A
    794591 8sfo:A (3.3) BS02 dna N/A GO:0003677 ... U2UMQ6 N/A
    794592 8sfo:A (3.3) BS03 dna N/A GO:0003677 ... U2UMQ6 N/A
    794593 8sfo:A (3.3) BS04 MG N/A GO:0003677 ... U2UMQ6 N/A
    794594 8sfo:A (3.3) BS05 MG N/A GO:0003677 ... U2UMQ6 N/A
    794595 8sfp:A (3.8) BS01 rna N/A GO:0003677 ... U2UMQ6 N/A
    794596 8sfp:A (3.8) BS02 dna N/A GO:0003677 ... U2UMQ6 N/A
    794597 8sfp:A (3.8) BS03 dna N/A GO:0003677 ... U2UMQ6 N/A
    794598 8sfq:A (3.5) BS01 rna N/A GO:0003677 ... U2UMQ6 N/A
    794599 8sfq:A (3.5) BS02 dna N/A GO:0003677 ... U2UMQ6 N/A
    794600 8sfq:A (3.5) BS03 dna N/A GO:0003677 ... U2UMQ6 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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