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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    793201 8rxx:SK (2.97) BS04 MG ? GO:0000462 ... P25204 38722744
    793202 8rxx:SL (2.97) BS01 rna ? GO:0000462 ... Q4Q9A5 38722744
    793203 8rxx:SM (2.97) BS01 rna ? GO:0003735 ... Q4Q8G4 38722744
    793204 8rxx:SN (2.97) BS01 rna ? GO:0003723 ... Q4Q1X7 38722744
    793205 8rxx:SO (2.97) BS01 rna ? GO:0000028 ... Q4Q8H1 38722744
    793206 8rxx:SP (2.97) BS01 rna ? GO:0003735 ... Q4QC89 38722744
    793207 8rxx:SQ (2.97) BS01 rna ? GO:0003735 ... Q4QG97 38722744
    793208 8rxx:SR (2.97) BS01 rna ? GO:0003676 ... Q4Q1Y3 38722744
    793209 8rxx:SS (2.97) BS01 rna ? GO:0002181 ... Q4Q817 38722744
    793210 8rxx:SS (2.97) BS02 ZN ? GO:0002181 ... Q4Q817 38722744
    793211 8rxx:ST (2.97) BS01 rna ? GO:0003735 ... Q4Q3M1 38722744
    793212 8rxx:ST (2.97) BS02 rna ? GO:0003735 ... Q4Q3M1 38722744
    793213 8rxx:ST (2.97) BS03 rna ? GO:0003735 ... Q4Q3M1 38722744
    793214 8rxx:SU (2.97) BS01 rna N/A GO:0003735 ... N/A 38722744
    793215 8rxx:SV (2.97) BS01 rna ? GO:0003735 ... Q4Q806 38722744
    793216 8rxx:SW (2.97) BS01 rna ? GO:0000028 ... Q4QBV0 38722744
    793217 8rxx:SX (2.97) BS01 rna ? GO:0000028 ... E9AEE8 38722744
    793218 8rxx:SY (2.97) BS01 rna ? GO:0000447 ... Q4QH01 38722744
    793219 8rxx:SZ (2.97) BS01 rna ? GO:0003735 ... Q4Q1D2 38722744
    793220 8rxx:Sa (2.97) BS01 rna ? GO:0003735 ... Q4Q9X4 38722744
    793221 8rxx:Sb (2.97) BS01 rna ? GO:0003729 ... Q4Q8L6 38722744
    793222 8rxx:Sb (2.97) BS02 ZN ? GO:0003729 ... Q4Q8L6 38722744
    793223 8rxx:Sc (2.97) BS01 rna ? GO:0000028 ... Q4Q140 38722744
    793224 8rxx:Sd (2.97) BS01 rna ? GO:0000028 ... Q4Q931 38722744
    793225 8rxx:Se (2.97) BS01 rna ? GO:0003735 ... Q4Q7P0 38722744
    793226 8rxx:Sf (2.97) BS01 rna ? GO:0003735 ... Q4QFK7 38722744
    793227 8rxx:Sh (2.97) BS01 rna ? GO:0003676 ... Q4Q5K7 38722744
    793228 8rzc:A (2.35) BS01 A1H4D 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    793229 8rzc:B (2.35) BS01 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0003723 ... P0DTC1 N/A
    793230 8rzc:B (2.35) BS02 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0003723 ... P0DTC1 N/A
    793231 8rzd:A (2.1) BS01 A1H4C 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    793232 8rzd:B (2.1) BS01 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0003723 ... P0DTC1 N/A
    793233 8rzd:B (2.1) BS02 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0003723 ... P0DTC1 N/A
    793234 8rze:A (2.0) BS01 A1H4B 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    793235 8rze:B (2.0) BS01 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0003723 ... P0DTC1 N/A
    793236 8rze:B (2.0) BS02 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0003723 ... P0DTC1 N/A
    793237 8rzv:A (1.51) BS01 dna ? GO:0003676 ... P09651 N/A
    793238 8rzw:A (2.02) BS01 A1H4N 3.1.3.48 GO:0004725 ... Q06124 38462716
    793239 8rzw:B (2.02) BS01 A1H4N 3.1.3.48 GO:0004725 ... Q06124 38462716
    793240 8rzy:A (1.91) BS01 A1H4L 3.1.3.48 GO:0004725 ... Q06124 38462716
    793241 8rzy:B (1.91) BS01 A1H4L 3.1.3.48 GO:0004725 ... Q06124 38462716
    793242 8s01:A (2.17) BS01 A1H4J 3.1.3.48 GO:0004725 ... Q06124 38462716
    793243 8s01:B (2.17) BS01 A1H4J 3.1.3.48 GO:0004725 ... Q06124 38462716
    793244 8s04:A (1.89) BS01 A1H4I 3.1.3.48 GO:0004725 ... Q06124 38462716
    793245 8s04:B (1.89) BS01 A1H4I 3.1.3.48 GO:0004725 ... Q06124 38462716
    793246 8s06:A (2.19) BS01 A1H4M 3.1.3.48 GO:0004725 ... Q06124 38462716
    793247 8s06:B (2.19) BS01 A1H4M 3.1.3.48 GO:0004725 ... Q06124 38462716
    793248 8s07:A (1.83) BS01 A1H4K 3.1.3.48 GO:0004725 ... Q06124 38462716
    793249 8s07:B (1.83) BS01 A1H4K 3.1.3.48 GO:0004725 ... Q06124 38462716
    793250 8s0h:A (1.99) BS01 A1H4Q 3.1.3.48 GO:0004725 ... Q06124 38462716
    793251 8s0h:B (1.99) BS01 A1H4Q 3.1.3.48 GO:0004725 ... Q06124 38462716
    793252 8s0i:A (1.929) BS01 A1H4P 3.1.3.48 GO:0004725 ... Q06124 38462716
    793253 8s0i:B (1.929) BS01 A1H4P 3.1.3.48 GO:0004725 ... Q06124 38462716
    793254 8s0j:A (1.89) BS01 A1H4R 3.1.3.48 GO:0004725 ... Q06124 38462716
    793255 8s0j:B (1.89) BS01 A1H4R 3.1.3.48 GO:0004725 ... Q06124 38462716
    793256 8s0k:A (1.84) BS01 A1H4S 3.1.3.48 GO:0004725 ... Q06124 38462716
    793257 8s0k:B (1.84) BS01 A1H4S 3.1.3.48 GO:0004725 ... Q06124 38462716
    793258 8s0o:A (1.834) BS01 A1H4G 3.1.3.48 GO:0004725 ... Q06124 38462716
    793259 8s0o:B (1.834) BS01 A1H4G 3.1.3.48 GO:0004725 ... Q06124 38462716
    793260 8s0p:A (2.0) BS01 A1H4O 3.1.3.48 GO:0004725 ... Q06124 38462716
    793261 8s0p:B (2.0) BS01 A1H4O 3.1.3.48 GO:0004725 ... Q06124 38462716
    793262 8s0q:A (1.872) BS01 A1H4T 3.1.3.48 GO:0004725 ... Q06124 38462716
    793263 8s0q:B (1.872) BS01 A1H4T 3.1.3.48 GO:0004725 ... Q06124 38462716
    793264 8s0s:A (1.94) BS01 A1H4H 3.1.3.48 GO:0004725 ... Q06124 38462716
    793265 8s0s:B (1.94) BS01 A1H4H 3.1.3.48 GO:0004725 ... Q06124 38462716
    793266 8s1k:A (1.22) BS01 A1H4Y ? GO:0005324 ... P15090 N/A
    793267 8s1p:0 (1.96) BS01 rna ? GO:0003735 ... O34687 38811035
    793268 8s1p:0 (1.96) BS02 ZN ? GO:0003735 ... O34687 38811035
    793269 8s1p:1 (1.96) BS01 rna ? GO:0005737 ... P56849 38811035
    793270 8s1p:1 (1.96) BS02 ZN ? GO:0005737 ... P56849 38811035
    793271 8s1p:2 (1.96) BS01 rna ? GO:0005840 ... P05647 38811035
    793272 8s1p:3 (1.96) BS01 rna ? GO:0003735 ... P55874 38811035
    793273 8s1p:4 (1.96) BS01 rna ? GO:0005737 ... P20278 38811035
    793274 8s1p:4 (1.96) BS02 ZN ? GO:0005737 ... P20278 38811035
    793275 8s1p:6 (1.96) BS01 rna ? GO:0005840 ... Q03223 38811035
    793276 8s1p:6 (1.96) BS02 ZN ? GO:0005840 ... Q03223 38811035
    793277 8s1p:C (1.96) BS01 rna ? GO:0002181 ... P42919 38811035
    793278 8s1p:D (1.96) BS01 rna ? GO:0003735 ... P42920 38811035
    793279 8s1p:E (1.96) BS01 rna ? GO:0003735 ... P42921 38811035
    793280 8s1p:F (1.96) BS01 rna ? GO:0000049 ... P12877 38811035
    793281 8s1p:F (1.96) BS02 rna ? GO:0000049 ... P12877 38811035
    793282 8s1p:F (1.96) BS03 rna ? GO:0000049 ... P12877 38811035
    793283 8s1p:G (1.96) BS01 rna ? GO:0002181 ... P46898 38811035
    793284 8s1p:J (1.96) BS01 rna ? GO:0003729 ... P70974 38811035
    793285 8s1p:K (1.96) BS01 rna ? GO:0003735 ... P12875 38811035
    793286 8s1p:L (1.96) BS01 rna ? GO:0003735 ... P19946 38811035
    793287 8s1p:M (1.96) BS01 rna ? GO:0000049 ... P14577 38811035
    793288 8s1p:M (1.96) BS02 rna ? GO:0000049 ... P14577 38811035
    793289 8s1p:N (1.96) BS01 rna ? GO:0003735 ... P20277 38811035
    793290 8s1p:N (1.96) BS02 MG ? GO:0003735 ... P20277 38811035
    793291 8s1p:O (1.96) BS01 rna ? GO:0005737 ... P46899 38811035
    793292 8s1p:O (1.96) BS02 rna ? GO:0005737 ... P46899 38811035
    793293 8s1p:P (1.96) BS01 rna ? GO:0003735 ... O31742 38811035
    793294 8s1p:Q (1.96) BS01 rna ? GO:0000027 ... P55873 38811035
    793295 8s1p:R (1.96) BS01 rna ? GO:0003735 ... P26908 38811035
    793296 8s1p:S (1.96) BS01 rna ? GO:0003735 ... P42060 38811035
    793297 8s1p:T (1.96) BS01 rna ? GO:0000027 ... P42924 38811035
    793298 8s1p:U (1.96) BS01 rna ? GO:0003677 ... P0CI78 38811035
    793299 8s1p:V (1.96) BS01 rna ? GO:0003723 ... P71020 38811035
    793300 8s1p:W (1.96) BS01 rna ? GO:0003735 ... P05657 38811035
    793301 8s1p:W (1.96) BS02 rna ? GO:0003735 ... P05657 38811035
    793302 8s1p:X (1.96) BS01 rna ? GO:0005840 ... P37807 38811035
    793303 8s1p:Y (1.96) BS01 rna ? GO:0005840 ... P12873 38811035
    793304 8s1p:Z (1.96) BS01 rna ? GO:0005840 ... P19947 38811035
    793305 8s1p:Z (1.96) BS02 rna ? GO:0005840 ... P19947 38811035
    793306 8s1u:0 (3.4) BS01 rna ? GO:0003735 ... O34687 38811035
    793307 8s1u:1 (3.4) BS01 rna ? GO:0005737 ... P56849 38811035
    793308 8s1u:2 (3.4) BS01 rna ? GO:0005840 ... P05647 38811035
    793309 8s1u:3 (3.4) BS01 rna ? GO:0003735 ... P55874 38811035
    793310 8s1u:4 (3.4) BS01 rna ? GO:0005737 ... P20278 38811035
    793311 8s1u:6 (3.4) BS01 rna ? GO:0005840 ... Q03223 38811035
    793312 8s1u:C (3.4) BS01 rna ? GO:0002181 ... P42919 38811035
    793313 8s1u:D (3.4) BS01 rna ? GO:0003735 ... P42920 38811035
    793314 8s1u:E (3.4) BS01 rna ? GO:0003735 ... P42921 38811035
    793315 8s1u:F (3.4) BS01 rna ? GO:0000049 ... P12877 38811035
    793316 8s1u:F (3.4) BS02 rna ? GO:0000049 ... P12877 38811035
    793317 8s1u:F (3.4) BS03 rna ? GO:0000049 ... P12877 38811035
    793318 8s1u:G (3.4) BS01 rna ? GO:0002181 ... P46898 38811035
    793319 8s1u:H (3.4) BS01 rna ? GO:0000049 ... O34693 38811035
    793320 8s1u:J (3.4) BS01 rna ? GO:0003729 ... P70974 38811035
    793321 8s1u:K (3.4) BS01 rna ? GO:0003735 ... P12875 38811035
    793322 8s1u:L (3.4) BS01 rna ? GO:0003735 ... P19946 38811035
    793323 8s1u:M (3.4) BS01 rna ? GO:0000049 ... P14577 38811035
    793324 8s1u:M (3.4) BS02 rna ? GO:0000049 ... P14577 38811035
    793325 8s1u:N (3.4) BS01 rna ? GO:0003735 ... P20277 38811035
    793326 8s1u:O (3.4) BS01 rna ? GO:0005737 ... P46899 38811035
    793327 8s1u:O (3.4) BS02 rna ? GO:0005737 ... P46899 38811035
    793328 8s1u:P (3.4) BS01 rna ? GO:0003735 ... O31742 38811035
    793329 8s1u:Q (3.4) BS01 rna ? GO:0000027 ... P55873 38811035
    793330 8s1u:R (3.4) BS01 rna ? GO:0003735 ... P26908 38811035
    793331 8s1u:S (3.4) BS01 rna ? GO:0003735 ... P42060 38811035
    793332 8s1u:T (3.4) BS01 rna ? GO:0000027 ... P42924 38811035
    793333 8s1u:U (3.4) BS01 rna ? GO:0003677 ... P0CI78 38811035
    793334 8s1u:V (3.4) BS01 rna ? GO:0003723 ... P71020 38811035
    793335 8s1u:V (3.4) BS02 rna ? GO:0003723 ... P71020 38811035
    793336 8s1u:W (3.4) BS01 rna ? GO:0003735 ... P05657 38811035
    793337 8s1u:W (3.4) BS02 rna ? GO:0003735 ... P05657 38811035
    793338 8s1u:X (3.4) BS01 rna ? GO:0005840 ... P37807 38811035
    793339 8s1u:Y (3.4) BS01 rna ? GO:0005840 ... P12873 38811035
    793340 8s1u:Z (3.4) BS01 rna ? GO:0005840 ... P19947 38811035
    793341 8s1u:Z (3.4) BS02 rna ? GO:0005840 ... P19947 38811035
    793342 8s32:A (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    793343 8s32:B (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    793344 8s32:C (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    793345 8s32:D (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    793346 8s32:E (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    793347 8s32:F (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    793348 8s32:G (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    793349 8s32:H (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    793350 8s32:I (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    793351 8s32:J (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    793352 8s32:K (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    793353 8s32:L (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    793354 8s32:M (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    793355 8s32:N (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    793356 8s3e:A (2.39) BS01 CLR ? GO:0005216 ... Q9BG98 38553946
    793357 8s3e:A (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    793358 8s3e:A (2.39) BS03 CA ? GO:0005216 ... Q9BG98 38553946
    793359 8s3e:A (2.39) BS04 CA ? GO:0005216 ... Q9BG98 38553946
    793360 8s3e:A (2.39) BS05 MG ? GO:0005216 ... Q9BG98 38553946
    793361 8s3e:B (2.39) BS01 MG ? GO:0005216 ... Q9BG98 38553946
    793362 8s3e:B (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    793363 8s3e:B (2.39) BS03 CLR ? GO:0005216 ... Q9BG98 38553946
    793364 8s3e:B (2.39) BS04 CA ? GO:0005216 ... Q9BG98 38553946
    793365 8s3e:B (2.39) BS05 CA ? GO:0005216 ... Q9BG98 38553946
    793366 8s3e:C (2.39) BS01 MG ? GO:0005216 ... Q9BG98 38553946
    793367 8s3e:C (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    793368 8s3e:C (2.39) BS03 CLR ? GO:0005216 ... Q9BG98 38553946
    793369 8s3e:C (2.39) BS04 CA ? GO:0005216 ... Q9BG98 38553946
    793370 8s3e:C (2.39) BS05 CA ? GO:0005216 ... Q9BG98 38553946
    793371 8s3e:D (2.39) BS01 MG ? GO:0005216 ... Q9BG98 38553946
    793372 8s3e:D (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    793373 8s3e:D (2.39) BS03 CLR ? GO:0005216 ... Q9BG98 38553946
    793374 8s3e:D (2.39) BS04 CA ? GO:0005216 ... Q9BG98 38553946
    793375 8s3e:D (2.39) BS05 CA ? GO:0005216 ... Q9BG98 38553946
    793376 8s3r:A (2.28) BS01 A1H48 N/A GO:0001779 ... O00329 38907711
    793377 8s3x:A (2.59) BS01 A1H41 2.7.11.1 GO:0004672 ... P53671 38669909
    793378 8s3x:B (2.59) BS01 A1H41 2.7.11.1 GO:0004672 ... P53671 38669909
    793379 8s3x:C (2.59) BS01 A1H41 2.7.11.1 GO:0004672 ... P53671 38669909
    793380 8s3x:D (2.59) BS01 A1H41 2.7.11.1 GO:0004672 ... P53671 38669909
    793381 8s51:A (3.1) BS01 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    793382 8s51:A (3.1) BS02 rna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    793383 8s51:A (3.1) BS03 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    793384 8s51:A (3.1) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    793385 8s51:A (3.1) BS05 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    793386 8s51:A (3.1) BS06 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    793387 8s51:B (3.1) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    793388 8s51:B (3.1) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    793389 8s51:B (3.1) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    793390 8s51:C (3.1) BS01 ZN ? GO:0000428 ... I3LCH3 38604172
    793391 8s51:E (3.1) BS01 dna ? GO:0001054 ... I3LSI7 38604172
    793392 8s51:I (3.1) BS01 ZN ? GO:0000428 ... P60899 38604172
    793393 8s51:I (3.1) BS02 ZN ? GO:0000428 ... P60899 38604172
    793394 8s51:J (3.1) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 38604172
    793395 8s51:L (3.1) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38604172
    793396 8s51:M (3.1) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    793397 8s51:M (3.1) BS02 rna 2.3.1.48 GO:0000776 ... Q00403 38604172
    793398 8s51:M (3.1) BS03 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    793399 8s51:M (3.1) BS04 ZN 2.3.1.48 GO:0000776 ... Q00403 38604172
    793400 8s51:O (3.1) BS01 dna ? GO:0000785 ... P20226 38604172
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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