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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    792201 8rjc:Y (2.90061) BS01 rna ? GO:0002181 ... G1SQH0 38896445
    792202 8rjc:Y (2.90061) BS02 rna ? GO:0002181 ... G1SQH0 38896445
    792203 8rjc:Z (2.90061) BS01 rna ? GO:0003735 ... G1TXF6 38896445
    792204 8rjc:a (2.90061) BS01 rna ? GO:0003735 ... G1SNY0 38896445
    792205 8rjc:b (2.90061) BS01 rna ? GO:0002181 ... G1SGR6 38896445
    792206 8rjc:c (2.90061) BS01 rna ? GO:0002181 ... G1TDL2 38896445
    792207 8rjc:d (2.90061) BS01 rna ? GO:0002181 ... G1SHG0 38896445
    792208 8rjc:e (2.90061) BS01 rna ? GO:0003735 ... G1TUN8 38896445
    792209 8rjc:f (2.90061) BS01 rna ? GO:0000049 ... G1SF08 38896445
    792210 8rjc:g (2.90061) BS01 rna ? GO:0003735 ... G1TXG5 38896445
    792211 8rjc:g (2.90061) BS02 MG ? GO:0003735 ... G1TXG5 38896445
    792212 8rjc:g (2.90061) BS03 ZN ? GO:0003735 ... G1TXG5 38896445
    792213 8rjc:h (2.90061) BS01 rna ? GO:0000463 ... G1SIT5 38896445
    792214 8rjc:h (2.90061) BS02 rna ? GO:0000463 ... G1SIT5 38896445
    792215 8rjc:i (2.90061) BS01 rna ? GO:0002181 ... G1TTQ5 38896445
    792216 8rjc:j (2.90061) BS01 rna ? GO:0003723 ... U3KPD5 38896445
    792217 8rjc:j (2.90061) BS02 rna ? GO:0003723 ... U3KPD5 38896445
    792218 8rjc:j (2.90061) BS03 ZN ? GO:0003723 ... U3KPD5 38896445
    792219 8rjc:k (2.90061) BS01 rna ? GO:0003735 ... G1U001 38896445
    792220 8rjc:l (2.90061) BS01 rna ? GO:0003735 ... G1TTN1 38896445
    792221 8rjc:l (2.90061) BS02 rna ? GO:0003735 ... G1TTN1 38896445
    792222 8rjc:m (2.90061) BS01 rna N/A GO:0003735 ... N/A 38896445
    792223 8rjc:m (2.90061) BS02 ZN N/A GO:0003735 ... N/A 38896445
    792224 8rjc:o (2.90061) BS01 rna ? GO:0003735 ... G1T040 38896445
    792225 8rjc:o (2.90061) BS02 ZN ? GO:0003735 ... G1T040 38896445
    792226 8rjc:p (2.90061) BS01 rna ? GO:0003735 ... G1SY53 38896445
    792227 8rjc:p (2.90061) BS02 ZN ? GO:0003735 ... G1SY53 38896445
    792228 8rjc:r (2.90061) BS01 rna ? GO:0003735 ... G1U7L1 38896445
    792229 8rjc:w (2.90061) BS01 rna ? GO:0003723 ... G1TL06 38896445
    792230 8rjd:1 (2.78574) BS01 rna ? GO:0005048 ... P38377 38896445
    792231 8rjd:4 (2.78574) BS01 rna ? GO:0001501 ... A0A8C0RGL8 38896445
    792232 8rjd:5 (2.78574) BS01 rna ? GO:0005789 ... P16967 38896445
    792233 8rjd:7 (2.78574) BS01 rna ? GO:0005783 ... A0A8C0T6I4 38896445
    792234 8rjd:A (2.78574) BS01 rna ? GO:0002181 ... G1TT27 38896445
    792235 8rjd:B (2.78574) BS01 rna N/A GO:0003779 ... N/A 38896445
    792236 8rjd:C (2.78574) BS01 rna ? GO:0003723 ... A0A5F9C3C5 38896445
    792237 8rjd:C (2.78574) BS02 rna ? GO:0003723 ... A0A5F9C3C5 38896445
    792238 8rjd:D (2.78574) BS01 rna ? GO:0000027 ... P19949 38896445
    792239 8rjd:D (2.78574) BS02 rna ? GO:0000027 ... P19949 38896445
    792240 8rjd:E (2.78574) BS01 rna ? GO:0000027 ... G1SKF7 38896445
    792241 8rjd:F (2.78574) BS01 rna ? GO:0000463 ... G1TUB1 38896445
    792242 8rjd:F (2.78574) BS02 rna ? GO:0000463 ... G1TUB1 38896445
    792243 8rjd:G (2.78574) BS01 rna ? GO:0000470 ... G1STW0 38896445
    792244 8rjd:G (2.78574) BS02 rna ? GO:0000470 ... G1STW0 38896445
    792245 8rjd:H (2.78574) BS01 rna ? GO:0002181 ... G1SWI6 38896445
    792246 8rjd:I (2.78574) BS01 rna ? GO:0000027 ... B7NZQ2 38896445
    792247 8rjd:I (2.78574) BS02 rna ? GO:0000027 ... B7NZQ2 38896445
    792248 8rjd:J (2.78574) BS01 rna ? GO:0003723 ... G1TUB8 38896445
    792249 8rjd:J (2.78574) BS02 rna ? GO:0003723 ... G1TUB8 38896445
    792250 8rjd:J (2.78574) BS03 rna ? GO:0003723 ... G1TUB8 38896445
    792251 8rjd:L (2.78574) BS01 rna ? GO:0003735 ... G1TPV0 38896445
    792252 8rjd:L (2.78574) BS02 rna ? GO:0003735 ... G1TPV0 38896445
    792253 8rjd:M (2.78574) BS01 rna ? GO:0003723 ... G1SZ12 38896445
    792254 8rjd:N (2.78574) BS01 rna ? GO:0002181 ... G1T0C1 38896445
    792255 8rjd:N (2.78574) BS02 rna ? GO:0002181 ... G1T0C1 38896445
    792256 8rjd:O (2.78574) BS01 rna ? GO:0003729 ... A0A0N8ETI8 38896445
    792257 8rjd:P (2.78574) BS01 rna ? GO:0002181 ... G1SCJ6 38896445
    792258 8rjd:P (2.78574) BS02 rna ? GO:0002181 ... G1SCJ6 38896445
    792259 8rjd:Q (2.78574) BS01 rna ? GO:0002181 ... F6QKI9 38896445
    792260 8rjd:R (2.78574) BS01 rna ? GO:0003723 ... G1TYL6 38896445
    792261 8rjd:S (2.78574) BS01 rna ? GO:0003735 ... A0A287APR1 38896445
    792262 8rjd:S (2.78574) BS02 rna ? GO:0003735 ... A0A287APR1 38896445
    792263 8rjd:T (2.78574) BS01 rna ? GO:0003735 ... G1SHQ2 38896445
    792264 8rjd:T (2.78574) BS02 rna ? GO:0003735 ... G1SHQ2 38896445
    792265 8rjd:U (2.78574) BS01 rna ? GO:0002181 ... Q4R5I3 38896445
    792266 8rjd:V (2.78574) BS01 rna ? GO:0000122 ... G1T6D1 38896445
    792267 8rjd:W (2.78574) BS01 rna ? GO:0000027 ... G1SE28 38896445
    792268 8rjd:X (2.78574) BS01 rna ? GO:0000027 ... G1SE76 38896445
    792269 8rjd:X (2.78574) BS02 rna ? GO:0000027 ... G1SE76 38896445
    792270 8rjd:Y (2.78574) BS01 rna ? GO:0002181 ... G1SQH0 38896445
    792271 8rjd:Y (2.78574) BS02 rna ? GO:0002181 ... G1SQH0 38896445
    792272 8rjd:Z (2.78574) BS01 rna ? GO:0003735 ... G1TXF6 38896445
    792273 8rjd:a (2.78574) BS01 rna ? GO:0003735 ... G1SNY0 38896445
    792274 8rjd:b (2.78574) BS01 rna ? GO:0002181 ... G1SGR6 38896445
    792275 8rjd:c (2.78574) BS01 rna ? GO:0002181 ... G1TDL2 38896445
    792276 8rjd:d (2.78574) BS01 rna ? GO:0002181 ... G1SHG0 38896445
    792277 8rjd:e (2.78574) BS01 rna ? GO:0003735 ... G1TUN8 38896445
    792278 8rjd:f (2.78574) BS01 rna ? GO:0000049 ... G1SF08 38896445
    792279 8rjd:g (2.78574) BS01 rna ? GO:0003735 ... G1TXG5 38896445
    792280 8rjd:g (2.78574) BS02 MG ? GO:0003735 ... G1TXG5 38896445
    792281 8rjd:g (2.78574) BS03 ZN ? GO:0003735 ... G1TXG5 38896445
    792282 8rjd:h (2.78574) BS01 rna ? GO:0000463 ... G1SIT5 38896445
    792283 8rjd:h (2.78574) BS02 rna ? GO:0000463 ... G1SIT5 38896445
    792284 8rjd:i (2.78574) BS01 rna ? GO:0002181 ... G1TTQ5 38896445
    792285 8rjd:j (2.78574) BS01 rna ? GO:0003723 ... U3KPD5 38896445
    792286 8rjd:j (2.78574) BS02 rna ? GO:0003723 ... U3KPD5 38896445
    792287 8rjd:j (2.78574) BS03 ZN ? GO:0003723 ... U3KPD5 38896445
    792288 8rjd:k (2.78574) BS01 rna ? GO:0003735 ... G1U001 38896445
    792289 8rjd:l (2.78574) BS01 rna ? GO:0003735 ... G1TTN1 38896445
    792290 8rjd:l (2.78574) BS02 rna ? GO:0003735 ... G1TTN1 38896445
    792291 8rjd:m (2.78574) BS01 rna N/A GO:0003735 ... N/A 38896445
    792292 8rjd:m (2.78574) BS02 ZN N/A GO:0003735 ... N/A 38896445
    792293 8rjd:o (2.78574) BS01 rna ? GO:0003735 ... G1T040 38896445
    792294 8rjd:o (2.78574) BS02 ZN ? GO:0003735 ... G1T040 38896445
    792295 8rjd:p (2.78574) BS01 rna ? GO:0003735 ... G1SY53 38896445
    792296 8rjd:p (2.78574) BS02 ZN ? GO:0003735 ... G1SY53 38896445
    792297 8rjd:r (2.78574) BS01 rna ? GO:0003735 ... G1U7L1 38896445
    792298 8rjd:w (2.78574) BS01 rna ? GO:0003723 ... G1TL06 38896445
    792299 8rjw:B (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    792300 8rjw:C (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    792301 8rjw:D (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    792302 8rjw:E (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    792303 8rjw:F (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    792304 8rjw:G (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    792305 8rk1:A (2.095) BS01 FE ? GO:0006826 ... Q7V0T9 38489389
    792306 8rkq:A (2.6) BS01 9SZ 1.2.1.88 GO:0003842 ... P30038 38675584
    792307 8rkq:D (2.6) BS01 9SZ 1.2.1.88 GO:0003842 ... P30038 38675584
    792308 8rkr:A (1.2) BS01 A1H1O 1.2.1.88 GO:0003842 ... P30038 38675584
    792309 8rks:A (3.1) BS01 peptide ? GO:0005515 ... Q9UBQ0 38607248
    792310 8rks:C (3.1) BS01 peptide ? GO:0005515 ... Q9UBQ0 38607248
    792311 8rks:E (3.1) BS01 peptide ? GO:0005515 ... Q9UBQ0 38607248
    792312 8rks:G (3.1) BS01 peptide ? GO:0005515 ... Q9UBQ0 38607248
    792313 8rkt:B (2.35) BS01 rna N/A GO:0005737 ... A0A139X9A4 38834066
    792314 8rln:A (2.43) BS01 CLR N/A GO:0042597 ... P0ABE7
    P29274    		 38751633
    792315 8rln:A (2.43) BS02 CLR N/A GO:0042597 ... P0ABE7
    P29274    		 38751633
    792316 8rln:A (2.43) BS03 CLR N/A GO:0042597 ... P0ABE7
    P29274    		 38751633
    792317 8rln:A (2.43) BS04 A1H1S N/A GO:0042597 ... P0ABE7
    P29274    		 38751633
    792318 8rm5:21 (6.9) BS01 rna ? GO:0000243 ... P62314 38778104
    792319 8rm5:22 (6.9) BS01 rna ? GO:0000245 ... P62316 38778104
    792320 8rm5:23 (6.9) BS01 rna ? GO:0000243 ... P62318 38778104
    792321 8rm5:2B (6.9) BS01 rna ? GO:0000398 ... P08579 38778104
    792322 8rm5:2b (6.9) BS01 rna ? GO:0000387 ... P14678 38778104
    792323 8rm5:2e (6.9) BS01 rna ? GO:0000245 ... P62304 38778104
    792324 8rm5:2f (6.9) BS01 rna ? GO:0000387 ... P62306 38778104
    792325 8rm5:2g (6.9) BS01 rna ? GO:0000245 ... P62308 38778104
    792326 8rm5:41 (6.9) BS01 rna ? GO:0000243 ... P62314 38778104
    792327 8rm5:42 (6.9) BS01 rna ? GO:0000245 ... P62316 38778104
    792328 8rm5:43 (6.9) BS01 rna ? GO:0000243 ... P62318 38778104
    792329 8rm5:4e (6.9) BS01 rna ? GO:0000245 ... P62304 38778104
    792330 8rm5:4f (6.9) BS01 rna ? GO:0000387 ... P62306 38778104
    792331 8rm5:4g (6.9) BS01 rna ? GO:0000245 ... P62308 38778104
    792332 8rm5:51 (6.9) BS01 rna ? GO:0000243 ... P62314 38778104
    792333 8rm5:52 (6.9) BS01 rna ? GO:0000245 ... P62316 38778104
    792334 8rm5:5b (6.9) BS01 rna ? GO:0000387 ... P14678 38778104
    792335 8rm5:5e (6.9) BS01 rna ? GO:0000245 ... P62304 38778104
    792336 8rm5:5f (6.9) BS01 rna ? GO:0000387 ... P62306 38778104
    792337 8rm5:5g (6.9) BS01 rna ? GO:0000245 ... P62308 38778104
    792338 8rm5:63 (6.9) BS01 rna ? GO:0000398 ... P62310 38778104
    792339 8rm5:68 (6.9) BS01 rna ? GO:0000398 ... O95777 38778104
    792340 8rm5:7 (6.9) BS01 rna ? GO:0000389 ... Q15459 38778104
    792341 8rm5:8 (6.9) BS01 rna ? GO:0000245 ... Q15428 38778104
    792342 8rm5:9 (6.9) BS01 rna ? GO:0000375 ... Q12874 38778104
    792343 8rm5:A (6.9) BS01 rna ? GO:0000244 ... Q6P2Q9 38778104
    792344 8rm5:A (6.9) BS02 rna ? GO:0000244 ... Q6P2Q9 38778104
    792345 8rm5:A (6.9) BS03 rna ? GO:0000244 ... Q6P2Q9 38778104
    792346 8rm5:B1 (6.9) BS01 rna ? GO:0000245 ... O75533 38778104
    792347 8rm5:B1 (6.9) BS02 rna ? GO:0000245 ... O75533 38778104
    792348 8rm5:B6 (6.9) BS01 rna ? GO:0000398 ... Q9Y3B4 38778104
    792349 8rm5:D (6.9) BS01 rna ? GO:0000245 ... P83876 38778104
    792350 8rm5:E (6.9) BS01 rna ? GO:0000375 ... Q96DI7 38778104
    792351 8rm5:F (6.9) BS01 rna ? GO:0000375 ... O43172 38778104
    792352 8rm5:J (6.9) BS01 rna ? GO:0000244 ... O43395 38778104
    792353 8rm5:L (6.9) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    792354 8rm5:L (6.9) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    792355 8rm5:M (6.9) BS01 rna ? GO:0000398 ... P55769 38778104
    792356 8rm5:N (6.9) BS01 rna ? GO:0000244 ... O94906 38778104
    792357 8rm6:A (2.05) BS01 dna ? GO:0003700 ... P10275 38604378
    792358 8rm6:A (2.05) BS02 dna ? GO:0003700 ... P10275 38604378
    792359 8rm6:A (2.05) BS03 ZN ? GO:0003700 ... P10275 38604378
    792360 8rm6:A (2.05) BS04 ZN ? GO:0003700 ... P10275 38604378
    792361 8rm6:B (2.05) BS01 dna ? GO:0003700 ... P10275 38604378
    792362 8rm6:B (2.05) BS02 dna ? GO:0003700 ... P10275 38604378
    792363 8rm6:B (2.05) BS03 ZN ? GO:0003700 ... P10275 38604378
    792364 8rm6:B (2.05) BS04 ZN ? GO:0003700 ... P10275 38604378
    792365 8rm7:A (2.25) BS01 dna ? GO:0003700 ... P10275 38604378
    792366 8rm7:A (2.25) BS02 dna ? GO:0003700 ... P10275 38604378
    792367 8rm7:A (2.25) BS03 ZN ? GO:0003700 ... P10275 38604378
    792368 8rm7:A (2.25) BS04 ZN ? GO:0003700 ... P10275 38604378
    792369 8rm7:B (2.25) BS01 dna ? GO:0003700 ... P10275 38604378
    792370 8rm7:B (2.25) BS02 dna ? GO:0003700 ... P10275 38604378
    792371 8rm7:B (2.25) BS03 ZN ? GO:0003700 ... P10275 38604378
    792372 8rm7:B (2.25) BS04 ZN ? GO:0003700 ... P10275 38604378
    792373 8rng:B (1.45) BS01 MG ? GO:0000139 ... P61769 N/A
    792374 8rom:A (1.69) BS01 FAD 2.7.7.2 GO:0003824 ... Q8NFF5 38688286
    792375 8rox:A (3.3) BS01 A1H17 ? GO:0000209 ... Q66K64 38513086
    792376 8roy:A (3.1) BS01 A1H18 ? GO:0000209 ... Q66K64 38513086
    792377 8rpk:A (2.615) BS01 MG N/A GO:0003987 ... A0A535FEC2 39019872
    792378 8rpk:B (2.615) BS01 MG N/A GO:0003987 ... A0A535FEC2 39019872
    792379 8rpk:C (2.615) BS01 MG N/A GO:0003987 ... A0A535FEC2 39019872
    792380 8rpk:D (2.615) BS01 MG N/A GO:0003987 ... A0A535FEC2 39019872
    792381 8rpl:A (2.37) BS01 6R9 N/A GO:0003987 ... A0A535FEC2 39019872
    792382 8rpl:A (2.37) BS02 MG N/A GO:0003987 ... A0A535FEC2 39019872
    792383 8rpl:B (2.37) BS01 6R9 N/A GO:0003987 ... A0A535FEC2 39019872
    792384 8rpl:B (2.37) BS02 MG N/A GO:0003987 ... A0A535FEC2 39019872
    792385 8rpl:C (2.37) BS01 6R9 N/A GO:0003987 ... A0A535FEC2 39019872
    792386 8rpl:C (2.37) BS02 MG N/A GO:0003987 ... A0A535FEC2 39019872
    792387 8rpl:D (2.37) BS01 6R9 N/A GO:0003987 ... A0A535FEC2 39019872
    792388 8rpr:A (2.14) BS01 COI N/A GO:0008168 ... R9UTR3 38887142
    792389 8rpr:A (2.14) BS02 MG N/A GO:0008168 ... R9UTR3 38887142
    792390 8rpr:A (2.14) BS03 MG N/A GO:0008168 ... R9UTR3 38887142
    792391 8rpr:A (2.14) BS04 ZN N/A GO:0008168 ... R9UTR3 38887142
    792392 8rpy:0 (2.64) BS01 rna ? GO:0000027 ... P0A7N4 38730238
    792393 8rpy:1 (2.64) BS01 rna ? GO:0000027 ... P0A7N9 38730238
    792394 8rpy:2 (2.64) BS01 rna ? GO:0002181 ... P0A7P5 38730238
    792395 8rpy:3 (2.64) BS01 rna ? GO:0002181 ... P0A7Q1 38730238
    792396 8rpy:4 (2.64) BS01 rna ? GO:0002181 ... P0A7Q6 38730238
    792397 8rpy:6 (2.64) BS01 rna ? GO:0002181 ... P0A7M9 38730238
    792398 8rpy:C (2.64) BS01 rna ? GO:0000027 ... P60422 38730238
    792399 8rpy:D (2.64) BS01 rna ? GO:0000027 ... P60438 38730238
    792400 8rpy:E (2.64) BS01 rna ? GO:0001070 ... P60723 38730238
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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