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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    791601 8rdw:OL (2.74) BS01 rna ? GO:0003735 ... A0A0M4TF29 38355796
    791602 8rdw:OL (2.74) BS02 rna ? GO:0003735 ... A0A0M4TF29 38355796
    791603 8rdw:Oi (2.74) BS01 rna ? GO:0003735 ... A0A0M4TV08 38355796
    791604 8rdw:Oi (2.74) BS02 rna ? GO:0003735 ... A0A0M4TV08 38355796
    791605 8rdw:PO (2.74) BS01 rna ? GO:0000027 ... A0A0M5MJR6 38355796
    791606 8rdw:Pj (2.74) BS01 rna ? GO:0003735 ... A0A0M4T275 38355796
    791607 8rdw:QZ (2.74) BS01 rna ? GO:0003735 ... A0A0M4U401 38355796
    791608 8rdw:Qb (2.74) BS01 rna ? GO:0003723 ... A0A0M5TIS3 38355796
    791609 8rdw:R3 (2.74) BS01 rna ? GO:0003735 ... A0A0M5MK69 38355796
    791610 8rdw:RF (2.74) BS01 rna ? GO:0003735 ... A0A0M4SWS6 38355796
    791611 8rdw:SP (2.74) BS01 rna ? GO:0000028 ... A0A0M4TUJ8 38355796
    791612 8rdw:Sn (2.74) BS01 rna ? GO:0000027 ... A0A0M5MJH9 38355796
    791613 8rdw:TI (2.74) BS01 rna ? GO:0003723 ... A0A0M4TE60 38355796
    791614 8rdw:To (2.74) BS01 rna ? GO:0003723 ... A0A0M4T3R2 38355796
    791615 8rdw:UC (2.74) BS01 rna ? GO:0003723 ... A0A0M4U726 38355796
    791616 8rdw:UC (2.74) BS02 rna ? GO:0003723 ... A0A0M4U726 38355796
    791617 8rdw:VH (2.74) BS01 rna ? GO:0003735 ... A0A0M4TUE5 38355796
    791618 8rdw:VH (2.74) BS02 rna ? GO:0003735 ... A0A0M4TUE5 38355796
    791619 8rdw:WD (2.74) BS01 rna ? GO:0003735 ... A0A0M4T6Y7 38355796
    791620 8rdw:XE (2.74) BS01 rna ? GO:0003735 ... A0A0M4TBX9 38355796
    791621 8rdw:YW (2.74) BS01 rna ? GO:0003735 ... A0A0M4SWR7 38355796
    791622 8rdw:YW (2.74) BS02 rna ? GO:0003735 ... A0A0M4SWR7 38355796
    791623 8rdw:aA (2.74) BS01 rna ? GO:0003735 ... A0A0M4SWQ6 38355796
    791624 8rdw:bk (2.74) BS01 rna ? GO:0003735 ... A0A0M4SWV1 38355796
    791625 8rdw:dh (2.74) BS01 rna ? GO:0003735 ... A0A0M4U4I0 38355796
    791626 8rdw:ep (2.74) BS01 rna ? GO:0003735 ... A0A0M4U3Z5 38355796
    791627 8rdw:fJ (2.74) BS01 rna ? GO:0003735 ... A0A0M4SX87 38355796
    791628 8rdx:B (3.67) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 38537632
    791629 8rdx:B (3.67) BS02 A1HZ4 2.5.1.59 GO:0003824 ... P53610 38537632
    791630 8rdx:D (3.67) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 38537632
    791631 8rdx:D (3.67) BS02 A1HZ4 2.5.1.59 GO:0003824 ... P53610 38537632
    791632 8rdx:F (3.67) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 38537632
    791633 8rdx:F (3.67) BS02 A1HZ4 2.5.1.59 GO:0003824 ... P53610 38537632
    791634 8rdx:H (3.67) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 38537632
    791635 8rdx:H (3.67) BS02 A1HZ4 2.5.1.59 GO:0003824 ... P53610 38537632
    791636 8rdx:J (3.67) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 38537632
    791637 8rdx:J (3.67) BS02 A1HZ4 2.5.1.59 GO:0003824 ... P53610 38537632
    791638 8rdx:L (3.67) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 38537632
    791639 8rdx:L (3.67) BS02 A1HZ4 2.5.1.59 GO:0003824 ... P53610 38537632
    791640 8rdz:A (2.02) BS01 MG 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    791641 8rdz:A (2.02) BS02 A1H14 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    791642 8rdz:A (2.02) BS03 MG 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    791643 8rdz:A (2.02) BS04 A1H14 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    791644 8rdz:B (2.02) BS01 MG 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    791645 8rdz:B (2.02) BS02 A1H14 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    791646 8rdz:B (2.02) BS03 MG 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    791647 8rdz:B (2.02) BS04 A1H14 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    791648 8rdz:C (2.02) BS01 A1H14 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    791649 8rdz:C (2.02) BS02 MG 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    791650 8rdz:C (2.02) BS03 A1H14 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    791651 8rdz:C (2.02) BS04 MG 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    791652 8rdz:D (2.02) BS01 A1H14 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    791653 8rdz:D (2.02) BS02 A1H14 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    791654 8rdz:D (2.02) BS03 MG 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    791655 8rdz:D (2.02) BS04 MG 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    791656 8re0:A (1.56) BS01 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    791657 8re0:A (1.56) BS02 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    791658 8re0:A (1.56) BS03 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    791659 8re0:A (1.56) BS04 A1H0D 1.1.5.2 GO:0008876 ... P13650 38687614
    791660 8re0:B (1.56) BS01 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    791661 8re0:B (1.56) BS02 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    791662 8re0:B (1.56) BS03 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    791663 8re0:B (1.56) BS04 A1H0D 1.1.5.2 GO:0008876 ... P13650 38687614
    791664 8re2:A (2.2) BS01 HEM ? GO:0004601 ... Q9RZ08 38257271
    791665 8re2:A (2.2) BS02 MG ? GO:0004601 ... Q9RZ08 38257271
    791666 8re2:A (2.2) BS03 MG ? GO:0004601 ... Q9RZ08 38257271
    791667 8re2:A (2.2) BS04 MG ? GO:0004601 ... Q9RZ08 38257271
    791668 8re3:A (1.51) BS01 HEM ? GO:0004601 ... Q9RZ08 38257271
    791669 8re3:B (1.51) BS01 HEM ? GO:0004601 ... Q9RZ08 38257271
    791670 8re4:C (2.8) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    791671 8re4:C (2.8) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    791672 8re4:C (2.8) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    791673 8re4:D (2.8) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791674 8re4:D (2.8) BS02 rna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791675 8re4:D (2.8) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791676 8re4:D (2.8) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791677 8re4:D (2.8) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791678 8re4:M (2.8) BS01 dna ? GO:0001216 ... P06223 38170755
    791679 8re4:M (2.8) BS02 dna ? GO:0001216 ... P06223 38170755
    791680 8rea:C (3.4) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    791681 8rea:C (3.4) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    791682 8rea:C (3.4) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    791683 8rea:D (3.4) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791684 8rea:D (3.4) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791685 8rea:D (3.4) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791686 8rea:D (3.4) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791687 8rea:D (3.4) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791688 8rea:M (3.4) BS01 dna ? GO:0001216 ... P06223 38170755
    791689 8rea:M (3.4) BS02 dna ? GO:0001216 ... P06223 38170755
    791690 8reb:C (3.4) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    791691 8reb:C (3.4) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    791692 8reb:C (3.4) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    791693 8reb:D (3.4) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791694 8reb:D (3.4) BS02 rna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791695 8reb:D (3.4) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791696 8reb:D (3.4) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791697 8reb:D (3.4) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791698 8reb:M (3.4) BS01 dna ? GO:0001216 ... P06223 38170755
    791699 8reb:M (3.4) BS02 dna ? GO:0001216 ... P06223 38170755
    791700 8rec:C (3.5) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    791701 8rec:C (3.5) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    791702 8rec:C (3.5) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    791703 8rec:D (3.5) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791704 8rec:D (3.5) BS02 rna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791705 8rec:D (3.5) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791706 8rec:D (3.5) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791707 8rec:D (3.5) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791708 8rec:M (3.5) BS01 dna ? GO:0001216 ... P06223 38170755
    791709 8rec:M (3.5) BS02 rna ? GO:0001216 ... P06223 38170755
    791710 8rec:M (3.5) BS03 dna ? GO:0001216 ... P06223 38170755
    791711 8red:C (3.9) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    791712 8red:C (3.9) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    791713 8red:C (3.9) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    791714 8red:D (3.9) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791715 8red:D (3.9) BS02 rna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791716 8red:D (3.9) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791717 8red:D (3.9) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791718 8red:M (3.9) BS01 dna ? GO:0001216 ... P06223 38170755
    791719 8red:M (3.9) BS02 dna ? GO:0001216 ... P06223 38170755
    791720 8ree:C (3.8) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    791721 8ree:C (3.8) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    791722 8ree:C (3.8) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    791723 8ree:D (3.8) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791724 8ree:D (3.8) BS02 rna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791725 8ree:D (3.8) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791726 8ree:D (3.8) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791727 8ree:D (3.8) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    791728 8ree:M (3.8) BS01 dna ? GO:0001216 ... P06223 38170755
    791729 8ree:M (3.8) BS02 dna ? GO:0001216 ... P06223 38170755
    791730 8ref:A (1.9) BS01 peptide ? GO:0006955 ... C5IYE8 38742159
    791731 8rev:A (3.1) BS01 dna 3.6.4.12 GO:0003677 ... G0RZH0 38806694
    791732 8rev:A (3.1) BS02 dna 3.6.4.12 GO:0003677 ... G0RZH0 38806694
    791733 8rev:A (3.1) BS03 SF4 3.6.4.12 GO:0003677 ... G0RZH0 38806694
    791734 8rev:A (3.1) BS04 ADP 3.6.4.12 GO:0003677 ... G0RZH0 38806694
    791735 8rf0:A (3.4) BS01 BGC N/A GO:0003824 ... N/A 38418509
    791736 8rf0:A (3.4) BS02 BGC N/A GO:0003824 ... N/A 38418509
    791737 8rf0:A (3.4) BS03 BGC N/A GO:0003824 ... N/A 38418509
    791738 8rf0:A (3.4) BS04 BGC N/A GO:0003824 ... N/A 38418509
    791739 8rf0:A (3.4) BS05 UPG N/A GO:0003824 ... N/A 38418509
    791740 8rfe:A (3.8) BS01 BGC N/A GO:0003824 ... N/A 38418509
    791741 8rfe:A (3.8) BS02 BGC N/A GO:0003824 ... N/A 38418509
    791742 8rfe:A (3.8) BS03 BGC N/A GO:0003824 ... N/A 38418509
    791743 8rfe:A (3.8) BS04 BGC N/A GO:0003824 ... N/A 38418509
    791744 8rfe:A (3.8) BS05 UPG N/A GO:0003824 ... N/A 38418509
    791745 8rfe:A (3.8) BS06 UPG N/A GO:0003824 ... N/A 38418509
    791746 8rfg:A (3.35) BS01 BGC N/A GO:0003824 ... N/A 38418509
    791747 8rfg:A (3.35) BS02 BGC N/A GO:0003824 ... N/A 38418509
    791748 8rfg:A (3.35) BS03 BGC N/A GO:0003824 ... N/A 38418509
    791749 8rfg:A (3.35) BS04 BGC N/A GO:0003824 ... N/A 38418509
    791750 8rfg:A (3.35) BS05 BGC N/A GO:0003824 ... N/A 38418509
    791751 8rfg:A (3.35) BS06 BGC N/A GO:0003824 ... N/A 38418509
    791752 8rfg:A (3.35) BS07 BGC N/A GO:0003824 ... N/A 38418509
    791753 8rfg:A (3.35) BS08 BGC N/A GO:0003824 ... N/A 38418509
    791754 8rfg:A (3.35) BS09 BGC N/A GO:0003824 ... N/A 38418509
    791755 8rfg:A (3.35) BS10 BGC N/A GO:0003824 ... N/A 38418509
    791756 8rfh:A (3.9) BS01 ADP ? GO:0006952 ... A0A0S3ANR1 N/A
    791757 8rfh:B (3.9) BS01 ADP ? GO:0006952 ... A0A0S3ANR1 N/A
    791758 8rfk:A (1.56) BS01 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    791759 8rfk:A (1.56) BS02 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    791760 8rfk:A (1.56) BS03 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    791761 8rfk:A (1.56) BS04 A1H0D 1.1.5.2 GO:0008876 ... P13650 38687614
    791762 8rfk:B (1.56) BS01 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    791763 8rfk:B (1.56) BS02 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    791764 8rfk:B (1.56) BS03 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    791765 8rfk:B (1.56) BS04 A1H0D 1.1.5.2 GO:0008876 ... P13650 38687614
    791766 8rfl:A (1.16) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    791767 8rfl:A (1.16) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    791768 8rfl:A (1.16) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    791769 8rfl:A (1.16) BS04 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    791770 8rfl:A (1.16) BS05 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    791771 8rfm:A (2.7) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    791772 8rfm:A (2.7) BS02 NAD 1.6.5.2 GO:0000209 ... P15559 38501509
    791773 8rfm:B (2.7) BS01 NAD 1.6.5.2 GO:0000209 ... P15559 38501509
    791774 8rfm:B (2.7) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    791775 8rfm:C (2.7) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    791776 8rfm:C (2.7) BS02 NAD 1.6.5.2 GO:0000209 ... P15559 38501509
    791777 8rfm:C (2.7) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    791778 8rfm:D (2.7) BS01 NAD 1.6.5.2 GO:0000209 ... P15559 38501509
    791779 8rfm:D (2.7) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    791780 8rfn:A (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    791781 8rfn:B (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    791782 8rfn:C (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    791783 8rfn:C (2.5) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    791784 8rfn:D (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    791785 8rfo:A (1.19) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    791786 8rfo:A (1.19) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    791787 8rfo:A (1.19) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    791788 8rfo:A (1.19) BS04 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    791789 8rfo:A (1.19) BS05 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    791790 8rfp:A (1.23) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    791791 8rfp:A (1.23) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    791792 8rfp:A (1.23) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    791793 8rfp:A (1.23) BS04 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    791794 8rfp:A (1.23) BS05 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    791795 8rfp:A (1.23) BS06 NO N/A GO:0016491 ... Q89EJ6 39002715
    791796 8rfq:A (1.32) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    791797 8rfq:A (1.32) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    791798 8rfq:A (1.32) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    791799 8rfq:A (1.32) BS04 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    791800 8rfq:A (1.32) BS05 NO N/A GO:0016491 ... Q89EJ6 39002715
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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