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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    791401 8rct:i2 (5.32) BS02 rna ? GO:0002181 ... P0A7R1 38409277
    791402 8rct:l2 (5.32) BS01 rna ? GO:0002181 ... P0A7P5 38409277
    791403 8rct:o2 (5.32) BS01 rna ? GO:0002181 ... P02413 38409277
    791404 8rct:o2 (5.32) BS02 MG ? GO:0002181 ... P02413 38409277
    791405 8rct:r2 (5.32) BS01 rna ? GO:0002181 ... P0C018 38409277
    791406 8rct:r2 (5.32) BS02 rna ? GO:0002181 ... P0C018 38409277
    791407 8rct:z2 (5.32) BS01 rna ? GO:0000027 ... P0A7L8 38409277
    791408 8rct:z2 (5.32) BS02 rna ? GO:0000027 ... P0A7L8 38409277
    791409 8rcv:A (1.65) BS01 peptide ? GO:0006955 ... C5IYE8 38742159
    791410 8rd8:A4 (2.62) BS01 rna ? GO:0003735 ... A0A0M4TFJ4 38355796
    791411 8rd8:Af (2.62) BS01 rna ? GO:0003735 ... A0A0M4T1M3 38355796
    791412 8rd8:BQ (2.62) BS01 rna ? GO:0003735 ... A0A0M4U618 38355796
    791413 8rd8:Ba (2.62) BS01 rna ? GO:0003735 ... A0A0M4TEZ6 38355796
    791414 8rd8:C1 (2.62) BS01 rna ? GO:0003735 ... A0A0M3V9E8 38355796
    791415 8rd8:CT (2.62) BS01 rna ? GO:0003676 ... A0A0M4T6V9 38355796
    791416 8rd8:Cl (2.62) BS01 rna ? GO:0002181 ... A0A0M3V8Q0 38355796
    791417 8rd8:D (2.62) BS01 rna ? GO:0005840 ... A0A0M4TFB0 38355796
    791418 8rd8:Dm (2.62) BS01 rna ? GO:0003723 ... A0A0M4TE52 38355796
    791419 8rd8:E5 (2.62) BS01 rna ? GO:0003723 ... A0A0M3V8J0 38355796
    791420 8rd8:E9 (2.62) BS01 rna ? GO:0003735 ... A0A0M4U627 38355796
    791421 8rd8:F (2.62) BS01 rna ? GO:0003723 ... A0A0M4T6M9 38355796
    791422 8rd8:F7 (2.62) BS01 rna ? GO:0000049 ... A0A0M4T1L5 38355796
    791423 8rd8:F7 (2.62) BS02 rna ? GO:0000049 ... A0A0M4T1L5 38355796
    791424 8rd8:FG (2.62) BS01 rna ? GO:0003735 ... A0A0M4U628 38355796
    791425 8rd8:GR (2.62) BS01 rna ? GO:0002181 ... A0A0M5MKV2 38355796
    791426 8rd8:GS (2.62) BS01 rna ? GO:0000028 ... A0A0M3V8N5 38355796
    791427 8rd8:H (2.62) BS01 rna ? GO:0003746 ... A0A0M4U5B4 38355796
    791428 8rd8:HK (2.62) BS01 rna ? GO:0003735 ... A0A0M3V8P8 38355796
    791429 8rd8:IX (2.62) BS01 rna ? GO:0003729 ... A0A0M4TBP4 38355796
    791430 8rd8:JY (2.62) BS01 rna ? GO:0000049 ... A0A0M4TE68 38355796
    791431 8rd8:Je (2.62) BS01 rna ? GO:0003735 ... A0A0M5MJS2 38355796
    791432 8rd8:Je (2.62) BS02 rna ? GO:0003735 ... A0A0M5MJS2 38355796
    791433 8rd8:KU (2.62) BS01 rna ? GO:0003735 ... A0A0M3V8P6 38355796
    791434 8rd8:Kd (2.62) BS01 rna ? GO:0003735 ... A0A0M4T6V1 38355796
    791435 8rd8:L6 (2.62) BS01 rna ? GO:0000049 ... A0A0M4U4C3 38355796
    791436 8rd8:Lg (2.62) BS01 rna ? GO:0000049 ... A0A0M3V8J3 38355796
    791437 8rd8:MB (2.62) BS01 rna ? GO:0003735 ... A0A0M4U611 38355796
    791438 8rd8:MM (2.62) BS01 rna ? GO:0000049 ... A0A0M5MJL8 38355796
    791439 8rd8:NV (2.62) BS01 rna ? GO:0003735 ... A0A0M4SY21 38355796
    791440 8rd8:Nc (2.62) BS01 rna ? GO:0003735 ... A0A0M4TUJ2 38355796
    791441 8rd8:Nc (2.62) BS02 rna ? GO:0003735 ... A0A0M4TUJ2 38355796
    791442 8rd8:OL (2.62) BS01 rna ? GO:0003735 ... A0A0M4TF29 38355796
    791443 8rd8:OL (2.62) BS02 rna ? GO:0003735 ... A0A0M4TF29 38355796
    791444 8rd8:Oi (2.62) BS01 rna ? GO:0003735 ... A0A0M4TV08 38355796
    791445 8rd8:Oi (2.62) BS02 rna ? GO:0003735 ... A0A0M4TV08 38355796
    791446 8rd8:PO (2.62) BS01 rna ? GO:0000027 ... A0A0M5MJR6 38355796
    791447 8rd8:Pj (2.62) BS01 rna ? GO:0003735 ... A0A0M4T275 38355796
    791448 8rd8:QZ (2.62) BS01 rna ? GO:0003735 ... A0A0M4U401 38355796
    791449 8rd8:Qb (2.62) BS01 rna ? GO:0003723 ... A0A0M5TIS3 38355796
    791450 8rd8:R3 (2.62) BS01 rna ? GO:0003735 ... A0A0M5MK69 38355796
    791451 8rd8:RF (2.62) BS01 rna ? GO:0003735 ... A0A0M4SWS6 38355796
    791452 8rd8:SP (2.62) BS01 rna ? GO:0000028 ... A0A0M4TUJ8 38355796
    791453 8rd8:Sn (2.62) BS01 rna ? GO:0000027 ... A0A0M5MJH9 38355796
    791454 8rd8:TI (2.62) BS01 rna ? GO:0003723 ... A0A0M4TE60 38355796
    791455 8rd8:To (2.62) BS01 rna ? GO:0003723 ... A0A0M4T3R2 38355796
    791456 8rd8:UC (2.62) BS01 rna ? GO:0003723 ... A0A0M4U726 38355796
    791457 8rd8:UC (2.62) BS02 rna ? GO:0003723 ... A0A0M4U726 38355796
    791458 8rd8:VH (2.62) BS01 rna ? GO:0003735 ... A0A0M4TUE5 38355796
    791459 8rd8:VH (2.62) BS02 rna ? GO:0003735 ... A0A0M4TUE5 38355796
    791460 8rd8:WD (2.62) BS01 rna ? GO:0003735 ... A0A0M4T6Y7 38355796
    791461 8rd8:XE (2.62) BS01 rna ? GO:0003735 ... A0A0M4TBX9 38355796
    791462 8rd8:YW (2.62) BS01 rna ? GO:0003735 ... A0A0M4SWR7 38355796
    791463 8rd8:YW (2.62) BS02 rna ? GO:0003735 ... A0A0M4SWR7 38355796
    791464 8rd8:aA (2.62) BS01 rna ? GO:0003735 ... A0A0M4SWQ6 38355796
    791465 8rd8:bk (2.62) BS01 rna ? GO:0003735 ... A0A0M4SWV1 38355796
    791466 8rd8:dh (2.62) BS01 rna ? GO:0003735 ... A0A0M4U4I0 38355796
    791467 8rd8:ep (2.62) BS01 rna ? GO:0003735 ... A0A0M4U3Z5 38355796
    791468 8rd8:fJ (2.62) BS01 rna ? GO:0003735 ... A0A0M4SX87 38355796
    791469 8rdj:C (2.62) BS01 dna 2.7.7.6 GO:0000428 ... A0A6C0M5W1 38428394
    791470 8rdj:C (2.62) BS02 dna 2.7.7.6 GO:0000428 ... A0A6C0M5W1 38428394
    791471 8rdj:C (2.62) BS03 rna 2.7.7.6 GO:0000428 ... A0A6C0M5W1 38428394
    791472 8rdj:D (2.62) BS01 dna 2.7.7.6 GO:0000287 ... A0A6C0M5W0 38428394
    791473 8rdj:D (2.62) BS02 dna 2.7.7.6 GO:0000287 ... A0A6C0M5W0 38428394
    791474 8rdj:D (2.62) BS03 MG 2.7.7.6 GO:0000287 ... A0A6C0M5W0 38428394
    791475 8rdj:E (2.62) BS01 dna 2.7.7.6 GO:0000428 ... A0A6C0M829 38428394
    791476 8rdj:E (2.62) BS02 ZN 2.7.7.6 GO:0000428 ... A0A6C0M829 38428394
    791477 8rdj:I (2.62) BS01 FE N/A GO:0004784 ... N/A 38428394
    791478 8rdj:N (2.62) BS01 FE N/A GO:0004784 ... N/A 38428394
    791479 8rdk:A (2.0) BS01 ZN 2.7.11.1 GO:0004672 ... Q8TF76 39067440
    791480 8rdk:A (2.0) BS02 YQT 2.7.11.1 GO:0004672 ... Q8TF76 39067440
    791481 8rdp:A (1.76) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    791482 8rdp:A (1.76) BS02 A1HZ7 ? GO:0046872 ... A4TVL0 38552426
    791483 8rdp:B (1.76) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    791484 8rdp:B (1.76) BS02 A1HZ7 ? GO:0046872 ... A4TVL0 38552426
    791485 8rdp:C (1.76) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    791486 8rdp:C (1.76) BS02 A1HZ7 ? GO:0046872 ... A4TVL0 38552426
    791487 8rdq:A (2.03) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    791488 8rdq:A (2.03) BS02 YQO ? GO:0046872 ... A4TVL0 38552426
    791489 8rdq:B (2.03) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    791490 8rdq:B (2.03) BS02 YQO ? GO:0046872 ... A4TVL0 38552426
    791491 8rdq:C (2.03) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    791492 8rdr:A (1.58) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    791493 8rdr:A (1.58) BS02 A1HZ3 ? GO:0046872 ... A4TVL0 38552426
    791494 8rdr:B (1.58) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    791495 8rdr:B (1.58) BS02 A1HZ3 ? GO:0046872 ... A4TVL0 38552426
    791496 8rdr:C (1.58) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    791497 8rdr:C (1.58) BS02 A1HZ3 ? GO:0046872 ... A4TVL0 38552426
    791498 8rds:A (2.0) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    791499 8rds:A (2.0) BS02 A1HZ6 ? GO:0046872 ... A4TVL0 38552426
    791500 8rds:B (2.0) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    791501 8rds:B (2.0) BS02 A1HZ6 ? GO:0046872 ... A4TVL0 38552426
    791502 8rds:C (2.0) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    791503 8rdt:A (1.95) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    791504 8rdt:A (1.95) BS02 A1HZ2 ? GO:0046872 ... A4TVL0 38552426
    791505 8rdt:B (1.95) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    791506 8rdt:B (1.95) BS02 A1HZ2 ? GO:0046872 ... A4TVL0 38552426
    791507 8rdt:C (1.95) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    791508 8rdu:B (2.3) BS01 rna N/A GO:0005737 ... A0A139X9A4 38834066
    791509 8rdv:A4 (2.6) BS01 rna ? GO:0003735 ... A0A0M4TFJ4 38355796
    791510 8rdv:Af (2.6) BS01 rna ? GO:0003735 ... A0A0M4T1M3 38355796
    791511 8rdv:BQ (2.6) BS01 rna ? GO:0003735 ... A0A0M4U618 38355796
    791512 8rdv:Ba (2.6) BS01 rna ? GO:0003735 ... A0A0M4TEZ6 38355796
    791513 8rdv:C1 (2.6) BS01 rna ? GO:0003735 ... A0A0M3V9E8 38355796
    791514 8rdv:CT (2.6) BS01 rna ? GO:0003676 ... A0A0M4T6V9 38355796
    791515 8rdv:Cl (2.6) BS01 rna ? GO:0002181 ... A0A0M3V8Q0 38355796
    791516 8rdv:Dm (2.6) BS01 rna ? GO:0003723 ... A0A0M4TE52 38355796
    791517 8rdv:E5 (2.6) BS01 rna ? GO:0003723 ... A0A0M3V8J0 38355796
    791518 8rdv:E9 (2.6) BS01 rna ? GO:0003735 ... A0A0M4U627 38355796
    791519 8rdv:F (2.6) BS01 rna ? GO:0003723 ... A0A0M4T6M9 38355796
    791520 8rdv:F (2.6) BS02 rna ? GO:0003723 ... A0A0M4T6M9 38355796
    791521 8rdv:F7 (2.6) BS01 rna ? GO:0000049 ... A0A0M4T1L5 38355796
    791522 8rdv:F7 (2.6) BS02 rna ? GO:0000049 ... A0A0M4T1L5 38355796
    791523 8rdv:F7 (2.6) BS03 rna ? GO:0000049 ... A0A0M4T1L5 38355796
    791524 8rdv:FG (2.6) BS01 rna ? GO:0003735 ... A0A0M4U628 38355796
    791525 8rdv:GR (2.6) BS01 rna ? GO:0002181 ... A0A0M5MKV2 38355796
    791526 8rdv:GS (2.6) BS01 rna ? GO:0000028 ... A0A0M3V8N5 38355796
    791527 8rdv:HK (2.6) BS01 rna ? GO:0003735 ... A0A0M3V8P8 38355796
    791528 8rdv:IX (2.6) BS01 rna ? GO:0003729 ... A0A0M4TBP4 38355796
    791529 8rdv:JY (2.6) BS01 rna ? GO:0000049 ... A0A0M4TE68 38355796
    791530 8rdv:Je (2.6) BS01 rna ? GO:0003735 ... A0A0M5MJS2 38355796
    791531 8rdv:Je (2.6) BS02 rna ? GO:0003735 ... A0A0M5MJS2 38355796
    791532 8rdv:KU (2.6) BS01 rna ? GO:0003735 ... A0A0M3V8P6 38355796
    791533 8rdv:Kd (2.6) BS01 rna ? GO:0003735 ... A0A0M4T6V1 38355796
    791534 8rdv:L6 (2.6) BS01 rna ? GO:0000049 ... A0A0M4U4C3 38355796
    791535 8rdv:Lg (2.6) BS01 rna ? GO:0000049 ... A0A0M3V8J3 38355796
    791536 8rdv:Lg (2.6) BS02 rna ? GO:0000049 ... A0A0M3V8J3 38355796
    791537 8rdv:MB (2.6) BS01 rna ? GO:0003735 ... A0A0M4U611 38355796
    791538 8rdv:MM (2.6) BS01 rna ? GO:0000049 ... A0A0M5MJL8 38355796
    791539 8rdv:NV (2.6) BS01 rna ? GO:0003735 ... A0A0M4SY21 38355796
    791540 8rdv:Nc (2.6) BS01 rna ? GO:0003735 ... A0A0M4TUJ2 38355796
    791541 8rdv:Nc (2.6) BS02 rna ? GO:0003735 ... A0A0M4TUJ2 38355796
    791542 8rdv:OL (2.6) BS01 rna ? GO:0003735 ... A0A0M4TF29 38355796
    791543 8rdv:OL (2.6) BS02 rna ? GO:0003735 ... A0A0M4TF29 38355796
    791544 8rdv:Oi (2.6) BS01 rna ? GO:0003735 ... A0A0M4TV08 38355796
    791545 8rdv:Oi (2.6) BS02 rna ? GO:0003735 ... A0A0M4TV08 38355796
    791546 8rdv:PO (2.6) BS01 rna ? GO:0000027 ... A0A0M5MJR6 38355796
    791547 8rdv:Pj (2.6) BS01 rna ? GO:0003735 ... A0A0M4T275 38355796
    791548 8rdv:QZ (2.6) BS01 rna ? GO:0003735 ... A0A0M4U401 38355796
    791549 8rdv:Qb (2.6) BS01 rna ? GO:0003723 ... A0A0M5TIS3 38355796
    791550 8rdv:R3 (2.6) BS01 rna ? GO:0003735 ... A0A0M5MK69 38355796
    791551 8rdv:RF (2.6) BS01 rna ? GO:0003735 ... A0A0M4SWS6 38355796
    791552 8rdv:SP (2.6) BS01 rna ? GO:0000028 ... A0A0M4TUJ8 38355796
    791553 8rdv:Sn (2.6) BS01 rna ? GO:0000027 ... A0A0M5MJH9 38355796
    791554 8rdv:TI (2.6) BS01 rna ? GO:0003723 ... A0A0M4TE60 38355796
    791555 8rdv:To (2.6) BS01 rna ? GO:0003723 ... A0A0M4T3R2 38355796
    791556 8rdv:UC (2.6) BS01 rna ? GO:0003723 ... A0A0M4U726 38355796
    791557 8rdv:UC (2.6) BS02 rna ? GO:0003723 ... A0A0M4U726 38355796
    791558 8rdv:VH (2.6) BS01 rna ? GO:0003735 ... A0A0M4TUE5 38355796
    791559 8rdv:VH (2.6) BS02 rna ? GO:0003735 ... A0A0M4TUE5 38355796
    791560 8rdv:WD (2.6) BS01 rna ? GO:0003735 ... A0A0M4T6Y7 38355796
    791561 8rdv:XE (2.6) BS01 rna ? GO:0003735 ... A0A0M4TBX9 38355796
    791562 8rdv:YW (2.6) BS01 rna ? GO:0003735 ... A0A0M4SWR7 38355796
    791563 8rdv:YW (2.6) BS02 rna ? GO:0003735 ... A0A0M4SWR7 38355796
    791564 8rdv:aA (2.6) BS01 rna ? GO:0003735 ... A0A0M4SWQ6 38355796
    791565 8rdv:bk (2.6) BS01 rna ? GO:0003735 ... A0A0M4SWV1 38355796
    791566 8rdv:dh (2.6) BS01 rna ? GO:0003735 ... A0A0M4U4I0 38355796
    791567 8rdv:ep (2.6) BS01 rna ? GO:0003735 ... A0A0M4U3Z5 38355796
    791568 8rdv:fJ (2.6) BS01 rna ? GO:0003735 ... A0A0M4SX87 38355796
    791569 8rdw:A4 (2.74) BS01 rna ? GO:0003735 ... A0A0M4TFJ4 38355796
    791570 8rdw:Af (2.74) BS01 rna ? GO:0003735 ... A0A0M4T1M3 38355796
    791571 8rdw:BQ (2.74) BS01 rna ? GO:0003735 ... A0A0M4U618 38355796
    791572 8rdw:Ba (2.74) BS01 rna ? GO:0003735 ... A0A0M4TEZ6 38355796
    791573 8rdw:C1 (2.74) BS01 rna ? GO:0003735 ... A0A0M3V9E8 38355796
    791574 8rdw:CT (2.74) BS01 rna ? GO:0003676 ... A0A0M4T6V9 38355796
    791575 8rdw:Cl (2.74) BS01 rna ? GO:0002181 ... A0A0M3V8Q0 38355796
    791576 8rdw:Dm (2.74) BS01 rna ? GO:0003723 ... A0A0M4TE52 38355796
    791577 8rdw:E5 (2.74) BS01 rna ? GO:0003723 ... A0A0M3V8J0 38355796
    791578 8rdw:E9 (2.74) BS01 rna ? GO:0003735 ... A0A0M4U627 38355796
    791579 8rdw:F (2.74) BS01 rna ? GO:0003723 ... A0A0M4T6M9 38355796
    791580 8rdw:F7 (2.74) BS01 rna ? GO:0000049 ... A0A0M4T1L5 38355796
    791581 8rdw:F7 (2.74) BS02 rna ? GO:0000049 ... A0A0M4T1L5 38355796
    791582 8rdw:FG (2.74) BS01 rna ? GO:0003735 ... A0A0M4U628 38355796
    791583 8rdw:GR (2.74) BS01 rna ? GO:0002181 ... A0A0M5MKV2 38355796
    791584 8rdw:GS (2.74) BS01 rna ? GO:0000028 ... A0A0M3V8N5 38355796
    791585 8rdw:H (2.74) BS01 rna ? GO:0003746 ... A0A0M4U5B4 38355796
    791586 8rdw:H (2.74) BS02 GDP ? GO:0003746 ... A0A0M4U5B4 38355796
    791587 8rdw:HK (2.74) BS01 rna ? GO:0003735 ... A0A0M3V8P8 38355796
    791588 8rdw:IX (2.74) BS01 rna ? GO:0003729 ... A0A0M4TBP4 38355796
    791589 8rdw:JY (2.74) BS01 rna ? GO:0000049 ... A0A0M4TE68 38355796
    791590 8rdw:Je (2.74) BS01 rna ? GO:0003735 ... A0A0M5MJS2 38355796
    791591 8rdw:KU (2.74) BS01 rna ? GO:0003735 ... A0A0M3V8P6 38355796
    791592 8rdw:Kd (2.74) BS01 rna ? GO:0003735 ... A0A0M4T6V1 38355796
    791593 8rdw:L6 (2.74) BS01 rna ? GO:0000049 ... A0A0M4U4C3 38355796
    791594 8rdw:Lg (2.74) BS01 rna ? GO:0000049 ... A0A0M3V8J3 38355796
    791595 8rdw:Lg (2.74) BS02 rna ? GO:0000049 ... A0A0M3V8J3 38355796
    791596 8rdw:MB (2.74) BS01 rna ? GO:0003735 ... A0A0M4U611 38355796
    791597 8rdw:MM (2.74) BS01 rna ? GO:0000049 ... A0A0M5MJL8 38355796
    791598 8rdw:NV (2.74) BS01 rna ? GO:0003735 ... A0A0M4SY21 38355796
    791599 8rdw:Nc (2.74) BS01 rna ? GO:0003735 ... A0A0M4TUJ2 38355796
    791600 8rdw:Nc (2.74) BS02 rna ? GO:0003735 ... A0A0M4TUJ2 38355796
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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