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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    791201 8rcm:E1 (3.59) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    791202 8rcm:E2 (3.59) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    791203 8rcm:E2 (3.59) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    791204 8rcm:F1 (3.59) BS01 rna ? GO:0002181 ... P02358 38409277
    791205 8rcm:F2 (3.59) BS01 rna ? GO:0002181 ... P02358 38409277
    791206 8rcm:G1 (3.59) BS01 rna ? GO:0000028 ... P02359 38409277
    791207 8rcm:G1 (3.59) BS02 rna ? GO:0000028 ... P02359 38409277
    791208 8rcm:G2 (3.59) BS01 rna ? GO:0000028 ... P02359 38409277
    791209 8rcm:G2 (3.59) BS02 rna ? GO:0000028 ... P02359 38409277
    791210 8rcm:G2 (3.59) BS03 rna ? GO:0000028 ... P02359 38409277
    791211 8rcm:H1 (3.59) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    791212 8rcm:H2 (3.59) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    791213 8rcm:I1 (3.59) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    791214 8rcm:I1 (3.59) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    791215 8rcm:I2 (3.59) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    791216 8rcm:I2 (3.59) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    791217 8rcm:J1 (3.59) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    791218 8rcm:J2 (3.59) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    791219 8rcm:K1 (3.59) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    791220 8rcm:K2 (3.59) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    791221 8rcm:L1 (3.59) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    791222 8rcm:L2 (3.59) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    791223 8rcm:M1 (3.59) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    791224 8rcm:M2 (3.59) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    791225 8rcm:M2 (3.59) BS02 rna ? GO:0000049 ... P0A7S9 38409277
    791226 8rcm:N1 (3.59) BS01 rna ? GO:0000028 ... P0AG59 38409277
    791227 8rcm:N2 (3.59) BS01 rna ? GO:0000028 ... P0AG59 38409277
    791228 8rcm:O1 (3.59) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    791229 8rcm:O2 (3.59) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    791230 8rcm:O2 (3.59) BS02 rna ? GO:0000028 ... P0ADZ4 38409277
    791231 8rcm:P1 (3.59) BS01 rna ? GO:0000028 ... P0A7T3 38409277
    791232 8rcm:Q1 (3.59) BS01 rna ? GO:0000028 ... P0AG63 38409277
    791233 8rcm:Q2 (3.59) BS01 rna ? GO:0000028 ... P0AG63 38409277
    791234 8rcm:R1 (3.59) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    791235 8rcm:R2 (3.59) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    791236 8rcm:S1 (3.59) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    791237 8rcm:S2 (3.59) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    791238 8rcm:T1 (3.59) BS01 rna ? GO:0000028 ... P0A7U7 38409277
    791239 8rcm:U1 (3.59) BS01 rna ? GO:0000028 ... P68679 38409277
    791240 8rcm:U1 (3.59) BS02 rna ? GO:0000028 ... P68679 38409277
    791241 8rcm:U2 (3.59) BS01 rna ? GO:0000028 ... P68679 38409277
    791242 8rcm:U2 (3.59) BS02 rna ? GO:0000028 ... P68679 38409277
    791243 8rcm:a2 (3.59) BS01 rna ? GO:0000027 ... P0A7L0 38409277
    791244 8rcm:b2 (3.59) BS01 rna ? GO:0000027 ... P60422 38409277
    791245 8rcm:b2 (3.59) BS02 rna ? GO:0000027 ... P60422 38409277
    791246 8rcm:e2 (3.59) BS01 rna ? GO:0000027 ... P62399 38409277
    791247 8rcm:e2 (3.59) BS02 rna ? GO:0000027 ... P62399 38409277
    791248 8rcm:e2 (3.59) BS03 rna ? GO:0000027 ... P62399 38409277
    791249 8rcm:g2 (3.59) BS01 rna ? GO:0000027 ... P0A7N9 38409277
    791250 8rcm:h2 (3.59) BS01 rna ? GO:0000027 ... P0ADY7 38409277
    791251 8rcm:h2 (3.59) BS02 rna ? GO:0000027 ... P0ADY7 38409277
    791252 8rcm:i2 (3.59) BS01 rna ? GO:0002181 ... P0A7R1 38409277
    791253 8rcm:i2 (3.59) BS02 rna ? GO:0002181 ... P0A7R1 38409277
    791254 8rcm:l2 (3.59) BS01 rna ? GO:0002181 ... P0A7P5 38409277
    791255 8rcm:o2 (3.59) BS01 rna ? GO:0002181 ... P02413 38409277
    791256 8rcm:r2 (3.59) BS01 rna ? GO:0002181 ... P0C018 38409277
    791257 8rcm:r2 (3.59) BS02 rna ? GO:0002181 ... P0C018 38409277
    791258 8rcm:z2 (3.59) BS01 rna ? GO:0000027 ... P0A7L8 38409277
    791259 8rcm:z2 (3.59) BS02 rna ? GO:0000027 ... P0A7L8 38409277
    791260 8rcs:12 (4.46) BS01 rna ? GO:0000027 ... P0A7M2 38409277
    791261 8rcs:12 (4.46) BS02 rna ? GO:0000027 ... P0A7M2 38409277
    791262 8rcs:32 (4.46) BS01 rna ? GO:0000027 ... P0AG51 38409277
    791263 8rcs:4 (4.46) BS01 rna ? GO:0002181 ... P0A7M9 38409277
    791264 8rcs:4 (4.46) BS02 rna ? GO:0002181 ... P0A7M9 38409277
    791265 8rcs:62 (4.46) BS01 rna ? GO:0002181 ... P0A7Q1 38409277
    791266 8rcs:B (4.46) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    791267 8rcs:B (4.46) BS02 rna ? GO:0000028 ... P0A7V0 38409277
    791268 8rcs:B (4.46) BS03 peptide ? GO:0000028 ... P0A7V0 38409277
    791269 8rcs:B (4.46) BS04 ZN ? GO:0000028 ... P0A7V0 38409277
    791270 8rcs:B2 (4.46) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    791271 8rcs:C1 (4.46) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    791272 8rcs:C1 (4.46) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    791273 8rcs:C2 (4.46) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    791274 8rcs:D1 (4.46) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    791275 8rcs:D2 (4.46) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    791276 8rcs:E1 (4.46) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    791277 8rcs:E1 (4.46) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    791278 8rcs:E2 (4.46) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    791279 8rcs:E2 (4.46) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    791280 8rcs:F1 (4.46) BS01 rna ? GO:0002181 ... P02358 38409277
    791281 8rcs:F2 (4.46) BS01 rna ? GO:0002181 ... P02358 38409277
    791282 8rcs:G1 (4.46) BS01 rna ? GO:0000028 ... P02359 38409277
    791283 8rcs:G2 (4.46) BS01 rna ? GO:0000028 ... P02359 38409277
    791284 8rcs:G2 (4.46) BS02 rna ? GO:0000028 ... P02359 38409277
    791285 8rcs:H1 (4.46) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    791286 8rcs:H2 (4.46) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    791287 8rcs:I1 (4.46) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    791288 8rcs:I2 (4.46) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    791289 8rcs:I2 (4.46) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    791290 8rcs:J1 (4.46) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    791291 8rcs:J2 (4.46) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    791292 8rcs:K1 (4.46) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    791293 8rcs:K2 (4.46) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    791294 8rcs:L1 (4.46) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    791295 8rcs:L2 (4.46) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    791296 8rcs:M1 (4.46) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    791297 8rcs:M2 (4.46) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    791298 8rcs:N1 (4.46) BS01 peptide ? GO:0000028 ... P0AG59 38409277
    791299 8rcs:N1 (4.46) BS02 rna ? GO:0000028 ... P0AG59 38409277
    791300 8rcs:N2 (4.46) BS01 rna ? GO:0000028 ... P0AG59 38409277
    791301 8rcs:O1 (4.46) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    791302 8rcs:O2 (4.46) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    791303 8rcs:O2 (4.46) BS02 rna ? GO:0000028 ... P0ADZ4 38409277
    791304 8rcs:P1 (4.46) BS01 rna ? GO:0000028 ... P0A7T3 38409277
    791305 8rcs:Q1 (4.46) BS01 rna ? GO:0000028 ... P0AG63 38409277
    791306 8rcs:Q2 (4.46) BS01 rna ? GO:0000028 ... P0AG63 38409277
    791307 8rcs:R1 (4.46) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    791308 8rcs:R2 (4.46) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    791309 8rcs:S1 (4.46) BS01 peptide ? GO:0000028 ... P0A7U3 38409277
    791310 8rcs:S1 (4.46) BS02 rna ? GO:0000028 ... P0A7U3 38409277
    791311 8rcs:S2 (4.46) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    791312 8rcs:T1 (4.46) BS01 rna ? GO:0000028 ... P0A7U7 38409277
    791313 8rcs:U1 (4.46) BS01 rna ? GO:0000028 ... P68679 38409277
    791314 8rcs:U1 (4.46) BS02 rna ? GO:0000028 ... P68679 38409277
    791315 8rcs:U2 (4.46) BS01 rna ? GO:0000028 ... P68679 38409277
    791316 8rcs:U2 (4.46) BS02 rna ? GO:0000028 ... P68679 38409277
    791317 8rcs:a2 (4.46) BS01 rna ? GO:0000027 ... P0A7L0 38409277
    791318 8rcs:b2 (4.46) BS01 rna ? GO:0000027 ... P60422 38409277
    791319 8rcs:b2 (4.46) BS02 rna ? GO:0000027 ... P60422 38409277
    791320 8rcs:e2 (4.46) BS01 rna ? GO:0000027 ... P62399 38409277
    791321 8rcs:e2 (4.46) BS02 rna ? GO:0000027 ... P62399 38409277
    791322 8rcs:g2 (4.46) BS01 rna ? GO:0000027 ... P0A7N9 38409277
    791323 8rcs:h2 (4.46) BS01 rna ? GO:0000027 ... P0ADY7 38409277
    791324 8rcs:h2 (4.46) BS02 rna ? GO:0000027 ... P0ADY7 38409277
    791325 8rcs:i2 (4.46) BS01 rna ? GO:0002181 ... P0A7R1 38409277
    791326 8rcs:i2 (4.46) BS02 rna ? GO:0002181 ... P0A7R1 38409277
    791327 8rcs:l2 (4.46) BS01 rna ? GO:0002181 ... P0A7P5 38409277
    791328 8rcs:o2 (4.46) BS01 rna ? GO:0002181 ... P02413 38409277
    791329 8rcs:o2 (4.46) BS02 MG ? GO:0002181 ... P02413 38409277
    791330 8rcs:r2 (4.46) BS01 rna ? GO:0002181 ... P0C018 38409277
    791331 8rcs:r2 (4.46) BS02 rna ? GO:0002181 ... P0C018 38409277
    791332 8rcs:z2 (4.46) BS01 rna ? GO:0000027 ... P0A7L8 38409277
    791333 8rcs:z2 (4.46) BS02 rna ? GO:0000027 ... P0A7L8 38409277
    791334 8rct:12 (5.32) BS01 rna ? GO:0000027 ... P0A7M2 38409277
    791335 8rct:12 (5.32) BS02 rna ? GO:0000027 ... P0A7M2 38409277
    791336 8rct:32 (5.32) BS01 rna ? GO:0000027 ... P0AG51 38409277
    791337 8rct:32 (5.32) BS02 rna ? GO:0000027 ... P0AG51 38409277
    791338 8rct:4 (5.32) BS01 rna ? GO:0002181 ... P0A7M9 38409277
    791339 8rct:4 (5.32) BS02 rna ? GO:0002181 ... P0A7M9 38409277
    791340 8rct:4 (5.32) BS03 ZN ? GO:0002181 ... P0A7M9 38409277
    791341 8rct:62 (5.32) BS01 rna ? GO:0002181 ... P0A7Q1 38409277
    791342 8rct:B (5.32) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    791343 8rct:B (5.32) BS02 peptide ? GO:0000028 ... P0A7V0 38409277
    791344 8rct:B (5.32) BS03 ZN ? GO:0000028 ... P0A7V0 38409277
    791345 8rct:B2 (5.32) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    791346 8rct:C1 (5.32) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    791347 8rct:C1 (5.32) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    791348 8rct:C2 (5.32) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    791349 8rct:D1 (5.32) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    791350 8rct:D2 (5.32) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    791351 8rct:E1 (5.32) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    791352 8rct:E1 (5.32) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    791353 8rct:E2 (5.32) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    791354 8rct:E2 (5.32) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    791355 8rct:F1 (5.32) BS01 rna ? GO:0002181 ... P02358 38409277
    791356 8rct:F2 (5.32) BS01 rna ? GO:0002181 ... P02358 38409277
    791357 8rct:G1 (5.32) BS01 rna ? GO:0000028 ... P02359 38409277
    791358 8rct:G2 (5.32) BS01 rna ? GO:0000028 ... P02359 38409277
    791359 8rct:G2 (5.32) BS02 rna ? GO:0000028 ... P02359 38409277
    791360 8rct:H1 (5.32) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    791361 8rct:H2 (5.32) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    791362 8rct:I1 (5.32) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    791363 8rct:I2 (5.32) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    791364 8rct:I2 (5.32) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    791365 8rct:J1 (5.32) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    791366 8rct:J2 (5.32) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    791367 8rct:K1 (5.32) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    791368 8rct:K2 (5.32) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    791369 8rct:L1 (5.32) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    791370 8rct:L2 (5.32) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    791371 8rct:M1 (5.32) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    791372 8rct:M2 (5.32) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    791373 8rct:N1 (5.32) BS01 peptide ? GO:0000028 ... P0AG59 38409277
    791374 8rct:N1 (5.32) BS02 rna ? GO:0000028 ... P0AG59 38409277
    791375 8rct:N2 (5.32) BS01 rna ? GO:0000028 ... P0AG59 38409277
    791376 8rct:O1 (5.32) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    791377 8rct:O2 (5.32) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    791378 8rct:O2 (5.32) BS02 rna ? GO:0000028 ... P0ADZ4 38409277
    791379 8rct:P1 (5.32) BS01 rna ? GO:0000028 ... P0A7T3 38409277
    791380 8rct:Q1 (5.32) BS01 rna ? GO:0000028 ... P0AG63 38409277
    791381 8rct:Q2 (5.32) BS01 rna ? GO:0000028 ... P0AG63 38409277
    791382 8rct:R1 (5.32) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    791383 8rct:R2 (5.32) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    791384 8rct:S1 (5.32) BS01 peptide ? GO:0000028 ... P0A7U3 38409277
    791385 8rct:S1 (5.32) BS02 rna ? GO:0000028 ... P0A7U3 38409277
    791386 8rct:S2 (5.32) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    791387 8rct:T1 (5.32) BS01 rna ? GO:0000028 ... P0A7U7 38409277
    791388 8rct:U1 (5.32) BS01 rna ? GO:0000028 ... P68679 38409277
    791389 8rct:U1 (5.32) BS02 rna ? GO:0000028 ... P68679 38409277
    791390 8rct:U2 (5.32) BS01 rna ? GO:0000028 ... P68679 38409277
    791391 8rct:U2 (5.32) BS02 rna ? GO:0000028 ... P68679 38409277
    791392 8rct:a2 (5.32) BS01 rna ? GO:0000027 ... P0A7L0 38409277
    791393 8rct:b2 (5.32) BS01 rna ? GO:0000027 ... P60422 38409277
    791394 8rct:b2 (5.32) BS02 rna ? GO:0000027 ... P60422 38409277
    791395 8rct:e2 (5.32) BS01 rna ? GO:0000027 ... P62399 38409277
    791396 8rct:e2 (5.32) BS02 rna ? GO:0000027 ... P62399 38409277
    791397 8rct:g2 (5.32) BS01 rna ? GO:0000027 ... P0A7N9 38409277
    791398 8rct:h2 (5.32) BS01 rna ? GO:0000027 ... P0ADY7 38409277
    791399 8rct:h2 (5.32) BS02 rna ? GO:0000027 ... P0ADY7 38409277
    791400 8rct:i2 (5.32) BS01 rna ? GO:0002181 ... P0A7R1 38409277
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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