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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    791001 8rbq:E (3.32) BS01 FES N/A GO:0005886 ... Q9F5Y1 38890433
    791002 8rbq:G (3.32) BS01 FMN N/A GO:0005886 ... C1DMA4 38890433
    791003 8rbu:A (2.7) BS01 peptide ? GO:0006955 ... Q5S3G3 38742159
    791004 8rbv:A (1.8) BS01 peptide ? GO:0006955 ... Q53Z42 38742159
    791005 8rbx:A (4.1) BS01 rna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38570683
    791006 8rbx:A (4.1) BS02 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38570683
    791007 8rbx:A (4.1) BS03 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38570683
    791008 8rbx:A (4.1) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38570683
    791009 8rbx:B (4.1) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38570683
    791010 8rbx:B (4.1) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38570683
    791011 8rbx:B (4.1) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38570683
    791012 8rbx:C (4.1) BS01 ZN ? GO:0000428 ... I3LCH3 38570683
    791013 8rbx:E (4.1) BS01 dna ? GO:0001054 ... I3LSI7 38570683
    791014 8rbx:I (4.1) BS01 ZN ? GO:0000428 ... P60899 38570683
    791015 8rbx:I (4.1) BS02 ZN ? GO:0000428 ... P60899 38570683
    791016 8rbx:J (4.1) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 38570683
    791017 8rbx:L (4.1) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38570683
    791018 8rbx:M (4.1) BS01 dna ? GO:0000786 ... Q6NXT2 38570683
    791019 8rbx:M (4.1) BS02 dna ? GO:0000786 ... Q6NXT2 38570683
    791020 8rbx:O (4.1) BS01 dna ? GO:0000781 ... P62805 38570683
    791021 8rbx:O (4.1) BS02 dna ? GO:0000781 ... P62805 38570683
    791022 8rbx:Q (4.1) BS01 dna ? GO:0000786 ... P02262 38570683
    791023 8rbx:Q (4.1) BS02 dna ? GO:0000786 ... P02262 38570683
    791024 8rbx:R (4.1) BS01 dna ? GO:0000786 ... P06899 38570683
    791025 8rbx:S (4.1) BS01 dna ? GO:0000786 ... Q6NXT2 38570683
    791026 8rbx:S (4.1) BS02 dna ? GO:0000786 ... Q6NXT2 38570683
    791027 8rbx:U (4.1) BS01 dna ? GO:0000781 ... P62805 38570683
    791028 8rbx:U (4.1) BS02 dna ? GO:0000781 ... P62805 38570683
    791029 8rbx:V (4.1) BS01 dna ? GO:0000786 ... P02262 38570683
    791030 8rbx:V (4.1) BS02 dna ? GO:0000786 ... P02262 38570683
    791031 8rbx:W (4.1) BS01 dna ? GO:0000786 ... P06899 38570683
    791032 8rbx:W (4.1) BS02 dna ? GO:0000786 ... P06899 38570683
    791033 8rbx:Z (4.1) BS01 rna ? GO:0000122 ... O00267 38570683
    791034 8rbx:b (4.1) BS01 peptide ? GO:0005515 ... Q9H0H0 38570683
    791035 8rbx:b (4.1) BS02 peptide ? GO:0005515 ... Q9H0H0 38570683
    791036 8rbx:f (4.1) BS01 peptide ? GO:0004888 ... Q9UL03 38570683
    791037 8rbx:f (4.1) BS02 MN ? GO:0004888 ... Q9UL03 38570683
    791038 8rbx:g (4.1) BS01 peptide ? GO:0000077 ... Q9NVH2 38570683
    791039 8rbx:g (4.1) BS02 peptide ? GO:0000077 ... Q9NVH2 38570683
    791040 8rbx:k (4.1) BS01 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    791041 8rbx:k (4.1) BS02 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    791042 8rbx:q (4.1) BS01 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    791043 8rbx:v (4.1) BS01 peptide ? GO:0003723 ... Q8WX92 38570683
    791044 8rbz:b (3.7) BS01 peptide ? GO:0005515 ... Q9H0H0 38570683
    791045 8rbz:c (3.7) BS01 peptide ? GO:0000724 ... Q68E01 38570683
    791046 8rbz:f (3.7) BS01 peptide ? GO:0004888 ... Q9UL03 38570683
    791047 8rbz:g (3.7) BS01 peptide ? GO:0000077 ... Q9NVH2 38570683
    791048 8rbz:g (3.7) BS02 peptide ? GO:0000077 ... Q9NVH2 38570683
    791049 8rbz:k (3.7) BS01 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    791050 8rbz:k (3.7) BS02 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    791051 8rbz:q (3.7) BS01 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    791052 8rbz:q (3.7) BS02 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    791053 8rc0:A (3.2) BS01 rna ? GO:0000244 ... Q6P2Q9 38467877
    791054 8rc0:C (3.2) BS01 GTP ? GO:0000398 ... Q15029 38467877
    791055 8rc0:E (3.2) BS01 rna ? GO:0000244 ... O94906 38467877
    791056 8rc0:h (3.2) BS01 rna ? GO:0000387 ... P14678 38467877
    791057 8rc0:i (3.2) BS01 rna ? GO:0000243 ... P62314 38467877
    791058 8rc0:j (3.2) BS01 rna ? GO:0000245 ... P62316 38467877
    791059 8rc0:m (3.2) BS01 rna ? GO:0000387 ... P62306 38467877
    791060 8rc0:n (3.2) BS01 rna ? GO:0000245 ... P62308 38467877
    791061 8rc1:A (3.7) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38431715
    791062 8rc1:B (3.7) BS01 GDP ? GO:0000226 ... P02554 38431715
    791063 8rc1:C (3.7) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38431715
    791064 8rc1:D (3.7) BS01 GDP ? GO:0000226 ... P02554 38431715
    791065 8rc4:k (3.1) BS01 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    791066 8rc4:k (3.1) BS02 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    791067 8rc4:q (3.1) BS01 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    791068 8rc4:q (3.1) BS02 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    791069 8rc8:A (2.005) BS01 MGD N/A GO:0005515 ... Q72EJ1 39148770
    791070 8rc8:A (2.005) BS02 MGD N/A GO:0005515 ... Q72EJ1 39148770
    791071 8rc8:A (2.005) BS03 SF4 N/A GO:0005515 ... Q72EJ1 39148770
    791072 8rc8:B (2.005) BS01 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    791073 8rc8:B (2.005) BS02 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    791074 8rc8:B (2.005) BS03 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    791075 8rc9:A (2.06) BS01 MGD N/A GO:0005515 ... Q72EJ1 39148770
    791076 8rc9:A (2.06) BS02 MGD N/A GO:0005515 ... Q72EJ1 39148770
    791077 8rc9:A (2.06) BS03 SF4 N/A GO:0005515 ... Q72EJ1 39148770
    791078 8rc9:A (2.06) BS04 OXY N/A GO:0005515 ... Q72EJ1 39148770
    791079 8rc9:B (2.06) BS01 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    791080 8rc9:B (2.06) BS02 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    791081 8rc9:B (2.06) BS03 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    791082 8rca:A (1.664) BS01 MGD N/A GO:0005515 ... Q72EJ1 39148770
    791083 8rca:A (1.664) BS02 MGD N/A GO:0005515 ... Q72EJ1 39148770
    791084 8rca:A (1.664) BS03 SF4 N/A GO:0005515 ... Q72EJ1 39148770
    791085 8rca:B (1.664) BS01 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    791086 8rca:B (1.664) BS02 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    791087 8rca:B (1.664) BS03 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    791088 8rcb:A (2.11) BS01 MGD N/A GO:0005515 ... Q72EJ1 39148770
    791089 8rcb:A (2.11) BS02 MGD N/A GO:0005515 ... Q72EJ1 39148770
    791090 8rcb:A (2.11) BS03 SF4 N/A GO:0005515 ... Q72EJ1 39148770
    791091 8rcb:A (2.11) BS04 OXY N/A GO:0005515 ... Q72EJ1 39148770
    791092 8rcb:B (2.11) BS01 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    791093 8rcb:B (2.11) BS02 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    791094 8rcb:B (2.11) BS03 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    791095 8rcc:A (2.301) BS01 MGD N/A GO:0005515 ... Q72EJ1 39148770
    791096 8rcc:A (2.301) BS02 MGD N/A GO:0005515 ... Q72EJ1 39148770
    791097 8rcc:A (2.301) BS03 SF4 N/A GO:0005515 ... Q72EJ1 39148770
    791098 8rcc:B (2.301) BS01 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    791099 8rcc:B (2.301) BS02 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    791100 8rcc:B (2.301) BS03 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    791101 8rcg:A (2.005) BS01 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 38699971
    791102 8rcg:A (2.005) BS02 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 38699971
    791103 8rcg:A (2.005) BS03 SF4 1.2.1.2 GO:0005515 ... Q72EJ1 38699971
    791104 8rcg:B (2.005) BS01 SF4 ? GO:0046872 ... Q72EJ0 38699971
    791105 8rcg:B (2.005) BS02 SF4 ? GO:0046872 ... Q72EJ0 38699971
    791106 8rcg:B (2.005) BS03 SF4 ? GO:0046872 ... Q72EJ0 38699971
    791107 8rcl:12 (3.49) BS01 rna ? GO:0000027 ... P0A7M2 38409277
    791108 8rcl:32 (3.49) BS01 rna ? GO:0000027 ... P0AG51 38409277
    791109 8rcl:32 (3.49) BS02 rna ? GO:0000027 ... P0AG51 38409277
    791110 8rcl:4 (3.49) BS01 rna ? GO:0002181 ... P0A7M9 38409277
    791111 8rcl:4 (3.49) BS02 rna ? GO:0002181 ... P0A7M9 38409277
    791112 8rcl:4 (3.49) BS03 ZN ? GO:0002181 ... P0A7M9 38409277
    791113 8rcl:62 (3.49) BS01 rna ? GO:0002181 ... P0A7Q1 38409277
    791114 8rcl:B (3.49) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    791115 8rcl:B (3.49) BS02 peptide ? GO:0000028 ... P0A7V0 38409277
    791116 8rcl:B (3.49) BS03 ZN ? GO:0000028 ... P0A7V0 38409277
    791117 8rcl:B2 (3.49) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    791118 8rcl:C1 (3.49) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    791119 8rcl:C1 (3.49) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    791120 8rcl:C2 (3.49) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    791121 8rcl:C2 (3.49) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    791122 8rcl:D1 (3.49) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    791123 8rcl:D2 (3.49) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    791124 8rcl:E1 (3.49) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    791125 8rcl:E1 (3.49) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    791126 8rcl:E2 (3.49) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    791127 8rcl:E2 (3.49) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    791128 8rcl:F1 (3.49) BS01 rna ? GO:0002181 ... P02358 38409277
    791129 8rcl:F2 (3.49) BS01 rna ? GO:0002181 ... P02358 38409277
    791130 8rcl:G1 (3.49) BS01 rna ? GO:0000028 ... P02359 38409277
    791131 8rcl:G1 (3.49) BS02 rna ? GO:0000028 ... P02359 38409277
    791132 8rcl:G2 (3.49) BS01 rna ? GO:0000028 ... P02359 38409277
    791133 8rcl:G2 (3.49) BS02 rna ? GO:0000028 ... P02359 38409277
    791134 8rcl:G2 (3.49) BS03 rna ? GO:0000028 ... P02359 38409277
    791135 8rcl:H1 (3.49) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    791136 8rcl:H2 (3.49) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    791137 8rcl:I1 (3.49) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    791138 8rcl:I1 (3.49) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    791139 8rcl:I2 (3.49) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    791140 8rcl:I2 (3.49) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    791141 8rcl:J1 (3.49) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    791142 8rcl:J2 (3.49) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    791143 8rcl:K1 (3.49) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    791144 8rcl:K2 (3.49) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    791145 8rcl:L1 (3.49) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    791146 8rcl:L2 (3.49) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    791147 8rcl:M1 (3.49) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    791148 8rcl:M2 (3.49) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    791149 8rcl:M2 (3.49) BS02 rna ? GO:0000049 ... P0A7S9 38409277
    791150 8rcl:N1 (3.49) BS01 rna ? GO:0000028 ... P0AG59 38409277
    791151 8rcl:N2 (3.49) BS01 rna ? GO:0000028 ... P0AG59 38409277
    791152 8rcl:O1 (3.49) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    791153 8rcl:O2 (3.49) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    791154 8rcl:O2 (3.49) BS02 rna ? GO:0000028 ... P0ADZ4 38409277
    791155 8rcl:P1 (3.49) BS01 rna ? GO:0000028 ... P0A7T3 38409277
    791156 8rcl:Q1 (3.49) BS01 rna ? GO:0000028 ... P0AG63 38409277
    791157 8rcl:Q2 (3.49) BS01 rna ? GO:0000028 ... P0AG63 38409277
    791158 8rcl:R1 (3.49) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    791159 8rcl:R2 (3.49) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    791160 8rcl:S1 (3.49) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    791161 8rcl:S2 (3.49) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    791162 8rcl:T1 (3.49) BS01 rna ? GO:0000028 ... P0A7U7 38409277
    791163 8rcl:U1 (3.49) BS01 rna ? GO:0000028 ... P68679 38409277
    791164 8rcl:U1 (3.49) BS02 rna ? GO:0000028 ... P68679 38409277
    791165 8rcl:U2 (3.49) BS01 rna ? GO:0000028 ... P68679 38409277
    791166 8rcl:U2 (3.49) BS02 rna ? GO:0000028 ... P68679 38409277
    791167 8rcl:a2 (3.49) BS01 rna ? GO:0000027 ... P0A7L0 38409277
    791168 8rcl:b2 (3.49) BS01 rna ? GO:0000027 ... P60422 38409277
    791169 8rcl:b2 (3.49) BS02 rna ? GO:0000027 ... P60422 38409277
    791170 8rcl:e2 (3.49) BS01 rna ? GO:0000027 ... P62399 38409277
    791171 8rcl:e2 (3.49) BS02 rna ? GO:0000027 ... P62399 38409277
    791172 8rcl:e2 (3.49) BS03 rna ? GO:0000027 ... P62399 38409277
    791173 8rcl:g2 (3.49) BS01 rna ? GO:0000027 ... P0A7N9 38409277
    791174 8rcl:h2 (3.49) BS01 rna ? GO:0000027 ... P0ADY7 38409277
    791175 8rcl:h2 (3.49) BS02 rna ? GO:0000027 ... P0ADY7 38409277
    791176 8rcl:i2 (3.49) BS01 rna ? GO:0002181 ... P0A7R1 38409277
    791177 8rcl:i2 (3.49) BS02 rna ? GO:0002181 ... P0A7R1 38409277
    791178 8rcl:l2 (3.49) BS01 rna ? GO:0002181 ... P0A7P5 38409277
    791179 8rcl:o2 (3.49) BS01 rna ? GO:0002181 ... P02413 38409277
    791180 8rcl:o2 (3.49) BS02 MG ? GO:0002181 ... P02413 38409277
    791181 8rcl:r2 (3.49) BS01 rna ? GO:0002181 ... P0C018 38409277
    791182 8rcl:r2 (3.49) BS02 rna ? GO:0002181 ... P0C018 38409277
    791183 8rcl:z2 (3.49) BS01 rna ? GO:0000027 ... P0A7L8 38409277
    791184 8rcm:12 (3.59) BS01 rna ? GO:0000027 ... P0A7M2 38409277
    791185 8rcm:32 (3.59) BS01 rna ? GO:0000027 ... P0AG51 38409277
    791186 8rcm:32 (3.59) BS02 rna ? GO:0000027 ... P0AG51 38409277
    791187 8rcm:4 (3.59) BS01 rna ? GO:0002181 ... P0A7M9 38409277
    791188 8rcm:4 (3.59) BS02 rna ? GO:0002181 ... P0A7M9 38409277
    791189 8rcm:4 (3.59) BS03 ZN ? GO:0002181 ... P0A7M9 38409277
    791190 8rcm:62 (3.59) BS01 rna ? GO:0002181 ... P0A7Q1 38409277
    791191 8rcm:B (3.59) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    791192 8rcm:B2 (3.59) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    791193 8rcm:C1 (3.59) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    791194 8rcm:C1 (3.59) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    791195 8rcm:C2 (3.59) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    791196 8rcm:C2 (3.59) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    791197 8rcm:D1 (3.59) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    791198 8rcm:D1 (3.59) BS02 rna ? GO:0000028 ... P0A7V8 38409277
    791199 8rcm:D2 (3.59) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    791200 8rcm:E1 (3.59) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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