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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    790601 8r57:P (2.55) BS01 rna ? GO:0000028 ... W5D067 38139282
    790602 8r57:P (2.55) BS02 MG ? GO:0000028 ... W5D067 38139282
    790603 8r57:Q (2.55) BS01 rna ? GO:0000462 ... W5DS33 38139282
    790604 8r57:R (2.55) BS01 rna ? GO:0000028 ... A0A3B6LV48 38139282
    790605 8r57:S (2.55) BS01 rna ? GO:0003676 ... Q8L806 38139282
    790606 8r57:T (2.55) BS01 rna ? GO:0003735 ... W5FWF5 38139282
    790607 8r57:U (2.55) BS01 rna ? GO:0003735 ... U5HTD8 38139282
    790608 8r57:Z (2.55) BS01 rna ? GO:0003735 ... W5EP45 38139282
    790609 8r57:c (2.55) BS01 rna ? GO:0000028 ... W5E8X2 38139282
    790610 8r57:d (2.55) BS01 rna ? GO:0002181 ... Q5I7K3 38139282
    790611 8r57:d (2.55) BS02 ZN ? GO:0002181 ... Q5I7K3 38139282
    790612 8r57:f (2.55) BS01 rna ? GO:0003729 ... W5A9E1 38139282
    790613 8r57:f (2.55) BS02 ZN ? GO:0003729 ... W5A9E1 38139282
    790614 8r57:g (2.55) BS01 rna ? GO:0005080 ... W5D4F5 38139282
    790615 8r57:h (2.55) BS01 rna ? GO:0003735 ... A0A3B5XY60 38139282
    790616 8r5h:R (3.44) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38382526
    790617 8r5h:R (3.44) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38382526
    790618 8r5h:R (3.44) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38382526
    790619 8r5k:A (0.89) BS01 Y6Z 5.2.1.8 GO:0003755 ... Q13451 38582133
    790620 8r5o:E (2.49) BS01 ZN 2.7.7.6 GO:0000428 ... A0A6C0M829 38428394
    790621 8r5o:I (2.49) BS01 FE N/A GO:0004784 ... N/A 38428394
    790622 8r5o:N (2.49) BS01 FE N/A GO:0004784 ... N/A 38428394
    790623 8r5q:A (2.62) BS01 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    790624 8r5q:A (2.62) BS02 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    790625 8r5q:A (2.62) BS03 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    790626 8r5q:B (2.62) BS01 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    790627 8r5q:B (2.62) BS02 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    790628 8r5q:B (2.62) BS03 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    790629 8r5q:C (2.62) BS01 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    790630 8r5q:C (2.62) BS02 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    790631 8r5q:C (2.62) BS03 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    790632 8r5q:D (2.62) BS01 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    790633 8r5q:D (2.62) BS02 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    790634 8r5q:D (2.62) BS03 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    790635 8r5r:A (3.078) BS01 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    790636 8r5r:A (3.078) BS02 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    790637 8r5r:A (3.078) BS03 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    790638 8r5r:B (3.078) BS01 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    790639 8r5r:B (3.078) BS02 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    790640 8r5r:B (3.078) BS03 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    790641 8r5r:C (3.078) BS01 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    790642 8r5r:C (3.078) BS02 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    790643 8r5r:C (3.078) BS03 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    790644 8r5r:D (3.078) BS01 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    790645 8r5r:D (3.078) BS02 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    790646 8r5r:D (3.078) BS03 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    790647 8r5t:A (1.58) BS01 Y4E 3.5.2.6 GO:0008270 ... C7C422 38373290
    790648 8r5t:A (1.58) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 38373290
    790649 8r5t:A (1.58) BS03 ZN 3.5.2.6 GO:0008270 ... C7C422 38373290
    790650 8r5t:B (1.58) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 38373290
    790651 8r5t:B (1.58) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 38373290
    790652 8r5u:A (1.56) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 38373290
    790653 8r5u:A (1.56) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 38373290
    790654 8r5u:A (1.56) BS03 Y4E 3.5.2.6 GO:0016787 ... Q9K2N0 38373290
    790655 8r5u:B (1.56) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 38373290
    790656 8r5u:B (1.56) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 38373290
    790657 8r5u:B (1.56) BS03 Y4E 3.5.2.6 GO:0016787 ... Q9K2N0 38373290
    790658 8r5v:A (1.8) BS01 Y4I 4.6.1.18 GO:0003676 ... P61823 N/A
    790659 8r5v:A (1.8) BS02 TF4 4.6.1.18 GO:0003676 ... P61823 N/A
    790660 8r5v:B (1.8) BS01 TF4 4.6.1.18 GO:0003676 ... P61823 N/A
    790661 8r60:A (3.23) BS01 rna 3.1.-.- GO:0003723 ... Q3HM39 N/A
    790662 8r60:A (3.23) BS02 rna 3.1.-.- GO:0003723 ... Q3HM39 N/A
    790663 8r60:A (3.23) BS03 peptide 3.1.-.- GO:0003723 ... Q3HM39 N/A
    790664 8r60:B (3.23) BS01 rna 2.7.7.48 GO:0000166 ... Q3HM40 N/A
    790665 8r60:B (3.23) BS02 rna 2.7.7.48 GO:0000166 ... Q3HM40 N/A
    790666 8r60:C (3.23) BS01 rna ? GO:0001172 ... Q3HM41 N/A
    790667 8r65:A (4.23) BS01 rna 3.1.-.- GO:0003723 ... Q3HM39 N/A
    790668 8r65:A (4.23) BS02 rna 3.1.-.- GO:0003723 ... Q3HM39 N/A
    790669 8r65:A (4.23) BS03 peptide 3.1.-.- GO:0003723 ... Q3HM39 N/A
    790670 8r65:B (4.23) BS01 rna 2.7.7.48 GO:0000166 ... Q3HM40 N/A
    790671 8r65:B (4.23) BS02 rna 2.7.7.48 GO:0000166 ... Q3HM40 N/A
    790672 8r65:C (4.23) BS01 rna ? GO:0001172 ... Q3HM41 N/A
    790673 8r67:A (2.2) BS01 GTP 3.6.5.- GO:0000226 ... P81947 38735475
    790674 8r67:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 38735475
    790675 8r67:B (2.2) BS01 GDP ? GO:0000226 ... Q6B856 38735475
    790676 8r67:B (2.2) BS02 CA ? GO:0000226 ... Q6B856 38735475
    790677 8r67:C (2.2) BS01 GTP 3.6.5.- GO:0000226 ... P81947 38735475
    790678 8r67:C (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 38735475
    790679 8r67:D (2.2) BS01 GDP ? GO:0000226 ... Q6B856 38735475
    790680 8r67:D (2.2) BS02 Y74 ? GO:0000226 ... Q6B856 38735475
    790681 8r67:D (2.2) BS03 Y74 ? GO:0000226 ... Q6B856 38735475
    790682 8r67:F (2.2) BS01 ACP 6.3.2.25 GO:0046872 ... A0A8V0Z8P0 38735475
    790683 8r6c:0 (2.2) BS01 rna N/A GO:0000027 ... P0A7N9 38826346
    790684 8r6c:1 (2.2) BS01 rna N/A GO:0002181 ... P0A7P5 38826346
    790685 8r6c:2 (2.2) BS01 rna N/A GO:0002181 ... P0A7Q1 38826346
    790686 8r6c:3 (2.2) BS01 rna N/A GO:0002181 ... P0A7Q6 38826346
    790687 8r6c:3 (2.2) BS02 ZN N/A GO:0002181 ... P0A7Q6 38826346
    790688 8r6c:4 (2.2) BS01 rna N/A GO:0002181 ... P0A7M9 38826346
    790689 8r6c:4 (2.2) BS02 ZN N/A GO:0002181 ... P0A7M9 38826346
    790690 8r6c:B (2.2) BS01 rna N/A GO:0000028 ... P0A7V0 38826346
    790691 8r6c:C (2.2) BS01 rna N/A GO:0000028 ... P0A7V3 38826346
    790692 8r6c:D (2.2) BS01 rna N/A GO:0000028 ... P0A7V8 38826346
    790693 8r6c:E (2.2) BS01 rna N/A GO:0000028 ... P0A7W1 38826346
    790694 8r6c:F (2.2) BS01 rna N/A GO:0002181 ... P02358 38826346
    790695 8r6c:G (2.2) BS01 rna N/A GO:0000028 ... P02359 38826346
    790696 8r6c:H (2.2) BS01 rna N/A GO:0000028 ... P0A7W7 38826346
    790697 8r6c:I (2.2) BS01 rna N/A GO:0000049 ... P0A7X3 38826346
    790698 8r6c:I (2.2) BS02 rna N/A GO:0000049 ... P0A7X3 38826346
    790699 8r6c:J (2.2) BS01 rna N/A GO:0000049 ... P0A7R5 38826346
    790700 8r6c:K (2.2) BS01 rna N/A GO:0002181 ... P0A7R9 38826346
    790701 8r6c:L (2.2) BS01 rna N/A GO:0000049 ... P0A7S3 38826346
    790702 8r6c:M (2.2) BS01 rna N/A GO:0000049 ... P0A7S9 38826346
    790703 8r6c:M (2.2) BS02 rna N/A GO:0000049 ... P0A7S9 38826346
    790704 8r6c:N (2.2) BS01 rna N/A GO:0000028 ... P0AG59 38826346
    790705 8r6c:O (2.2) BS01 rna N/A GO:0000028 ... P0ADZ4 38826346
    790706 8r6c:O (2.2) BS02 rna N/A GO:0000028 ... P0ADZ4 38826346
    790707 8r6c:P (2.2) BS01 rna N/A GO:0000028 ... P0A7T3 38826346
    790708 8r6c:Q (2.2) BS01 rna N/A GO:0000028 ... P0AG63 38826346
    790709 8r6c:R (2.2) BS01 rna N/A GO:0002181 ... P0A7T7 38826346
    790710 8r6c:S (2.2) BS01 rna N/A GO:0000028 ... P0A7U3 38826346
    790711 8r6c:T (2.2) BS01 rna N/A GO:0000028 ... P0A7U7 38826346
    790712 8r6c:U (2.2) BS01 rna N/A GO:0000028 ... P68679 38826346
    790713 8r6c:c (2.2) BS01 rna N/A GO:0000027 ... P60422 38826346
    790714 8r6c:c (2.2) BS02 rna N/A GO:0000027 ... P60422 38826346
    790715 8r6c:d (2.2) BS01 rna N/A GO:0000027 ... P60438 38826346
    790716 8r6c:e (2.2) BS01 rna N/A GO:0001070 ... P60723 38826346
    790717 8r6c:f (2.2) BS01 rna N/A GO:0000027 ... P62399 38826346
    790718 8r6c:f (2.2) BS02 rna N/A GO:0000027 ... P62399 38826346
    790719 8r6c:f (2.2) BS03 rna N/A GO:0000027 ... P62399 38826346
    790720 8r6c:g (2.2) BS01 rna N/A GO:0000027 ... P0AG55 38826346
    790721 8r6c:h (2.2) BS01 rna N/A GO:0002181 ... P0A7R1 38826346
    790722 8r6c:i (2.2) BS01 rna N/A GO:0002181 ... P0AA10 38826346
    790723 8r6c:j (2.2) BS01 rna N/A GO:0002181 ... P0ADY3 38826346
    790724 8r6c:j (2.2) BS02 rna N/A GO:0002181 ... P0ADY3 38826346
    790725 8r6c:k (2.2) BS01 rna N/A GO:0002181 ... P02413 38826346
    790726 8r6c:l (2.2) BS01 rna N/A GO:0000027 ... P0ADY7 38826346
    790727 8r6c:l (2.2) BS02 rna N/A GO:0000027 ... P0ADY7 38826346
    790728 8r6c:l (2.2) BS03 rna N/A GO:0000027 ... P0ADY7 38826346
    790729 8r6c:m (2.2) BS01 rna N/A GO:0000027 ... P0AG44 38826346
    790730 8r6c:n (2.2) BS01 rna N/A GO:0002181 ... P0C018 38826346
    790731 8r6c:n (2.2) BS02 rna N/A GO:0002181 ... P0C018 38826346
    790732 8r6c:o (2.2) BS01 rna N/A GO:0000027 ... P0A7K6 38826346
    790733 8r6c:o (2.2) BS02 rna N/A GO:0000027 ... P0A7K6 38826346
    790734 8r6c:p (2.2) BS01 rna N/A GO:0000027 ... P0A7L3 38826346
    790735 8r6c:q (2.2) BS01 rna N/A GO:0002181 ... P0AG48 38826346
    790736 8r6c:r (2.2) BS01 rna N/A GO:0002181 ... P61175 38826346
    790737 8r6c:s (2.2) BS01 rna N/A GO:0000027 ... P0ADZ0 38826346
    790738 8r6c:t (2.2) BS01 rna N/A GO:0000027 ... P60624 38826346
    790739 8r6c:u (2.2) BS01 rna N/A GO:0000027 ... P68919 38826346
    790740 8r6c:u (2.2) BS02 rna N/A GO:0000027 ... P68919 38826346
    790741 8r6c:v (2.2) BS01 rna N/A GO:0000027 ... P0A7L8 38826346
    790742 8r6c:v (2.2) BS02 rna N/A GO:0000027 ... P0A7L8 38826346
    790743 8r6c:v (2.2) BS03 rna N/A GO:0000027 ... P0A7L8 38826346
    790744 8r6c:w (2.2) BS01 rna N/A GO:0000027 ... P0A7M2 38826346
    790745 8r6c:w (2.2) BS02 rna N/A GO:0000027 ... P0A7M2 38826346
    790746 8r6c:x (2.2) BS01 rna N/A GO:0000027 ... P0A7M6 38826346
    790747 8r6c:y (2.2) BS01 rna N/A GO:0000027 ... P0AG51 38826346
    790748 8r6c:y (2.2) BS02 rna N/A GO:0000027 ... P0AG51 38826346
    790749 8r6c:z (2.2) BS01 rna N/A GO:0000027 ... P0A7N4 38826346
    790750 8r6f:B (2.34) BS01 rna ? GO:0003735 ... A0A3B6IU74 38139282
    790751 8r6f:C (2.34) BS01 rna ? GO:0003723 ... A0A3B6KRQ3 38139282
    790752 8r6f:E (2.34) BS01 rna ? GO:0003723 ... A0A1D5SLI4 38139282
    790753 8r6f:G (2.34) BS01 rna ? GO:0003735 ... W5C8N6 38139282
    790754 8r6f:H (2.34) BS01 rna ? GO:0003735 ... Q5I7K2 38139282
    790755 8r6f:I (2.34) BS01 rna ? GO:0000462 ... A0A1D5UKZ4 38139282
    790756 8r6f:J (2.34) BS01 rna ? GO:0003723 ... W5FPA7 38139282
    790757 8r6f:L (2.34) BS01 rna ? GO:0003735 ... W5BFB7 38139282
    790758 8r6f:N (2.34) BS01 rna ? GO:0003735 ... W5I035 38139282
    790759 8r6f:O (2.34) BS01 rna ? GO:0000028 ... A0A3B6SS17 38139282
    790760 8r6f:V (2.34) BS01 rna ? GO:0000447 ... A0A0C4BJ86 38139282
    790761 8r6f:W (2.34) BS01 rna ? GO:0003735 ... E2F3W4 38139282
    790762 8r6f:X (2.34) BS01 rna ? GO:0003735 ... W5FV77 38139282
    790763 8r6f:Y (2.34) BS01 rna ? GO:0003735 ... A0A3B6RHV8 38139282
    790764 8r6f:a (2.34) BS01 rna ? GO:0003729 ... A0A3B6KQB8 38139282
    790765 8r6f:a (2.34) BS02 ZN ? GO:0003729 ... A0A3B6KQB8 38139282
    790766 8r6f:b (2.34) BS01 rna ? GO:0000028 ... A0A341UET3 38139282
    790767 8r6f:e (2.34) BS01 rna ? GO:0003735 ... A0A3B6S9M7 38139282
    790768 8r6f:k (2.34) BS01 peptide ? GO:0000028 ... W5E2W7 38139282
    790769 8r6f:k (2.34) BS02 rna ? GO:0000028 ... W5E2W7 38139282
    790770 8r6s:E (2.49) BS01 ZN 2.7.7.6 GO:0000428 ... A0A6C0M829 38428394
    790771 8r6s:I (2.49) BS01 FE N/A GO:0004784 ... N/A 38428394
    790772 8r6s:N (2.49) BS01 FE N/A GO:0004784 ... N/A 38428394
    790773 8r6u:A (2.98) BS01 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    790774 8r6u:A (2.98) BS02 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    790775 8r6u:A (2.98) BS03 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    790776 8r6u:A (2.98) BS04 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    790777 8r6u:A (2.98) BS05 MG 2.7.7.48 GO:0001172 ... I0DF35 38709882
    790778 8r6w:A (3.35) BS01 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    790779 8r6w:A (3.35) BS02 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    790780 8r6w:A (3.35) BS03 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    790781 8r6w:A (3.35) BS04 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    790782 8r6y:A (3.4) BS01 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    790783 8r6y:A (3.4) BS02 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    790784 8r6y:A (3.4) BS03 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    790785 8r6y:A (3.4) BS04 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    790786 8r6y:A (3.4) BS05 2KH 2.7.7.48 GO:0001172 ... I0DF35 38709882
    790787 8r6y:A (3.4) BS06 MG 2.7.7.48 GO:0001172 ... I0DF35 38709882
    790788 8r74:A (1.54) BS01 YBC ? GO:0002317 ... P09382 38804039
    790789 8r74:B (1.54) BS01 YBC ? GO:0002317 ... P09382 38804039
    790790 8r7g:A (2.09) BS01 YEE 2.7.11.30 GO:0004672 ... Q04771 32369358
    790791 8r7g:B (2.09) BS01 YEE 2.7.11.30 GO:0004672 ... Q04771 32369358
    790792 8r7g:C (2.09) BS01 YEE 2.7.11.30 GO:0004672 ... Q04771 32369358
    790793 8r7g:D (2.09) BS01 YEE 2.7.11.30 GO:0004672 ... Q04771 32369358
    790794 8r7m:A (1.0) BS01 BO3 3.5.2.6 GO:0008800 ... A0A2S1JJX2 38969718
    790795 8r7m:A (1.0) BS02 YCH 3.5.2.6 GO:0008800 ... A0A2S1JJX2 38969718
    790796 8r7q:C (2.78) BS01 QI9 N/A GO:0005243 ... Q9UKL4 38890333
    790797 8r7q:F (2.78) BS01 QI9 N/A GO:0005243 ... Q9UKL4 38890333
    790798 8r7y:A (3.7) BS01 dna N/A GO:0003677 ... P39140 38842936
    790799 8r7y:A (3.7) BS02 dna N/A GO:0003677 ... P39140 38842936
    790800 8r7y:B (3.7) BS01 dna N/A GO:0003677 ... P39140 38842936
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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