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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    47001 1sox:A (1.9) BS02 HEM 1.8.3.1 GO:0005739 ... P07850 9428520
    47002 1sox:B (1.9) BS01 SO4 1.8.3.1 GO:0005739 ... P07850 9428520
    47003 1sox:B (1.9) BS02 MO 1.8.3.1 GO:0005739 ... P07850 9428520
    47004 1sox:B (1.9) BS03 HEM 1.8.3.1 GO:0005739 ... P07850 9428520
    47005 1soz:A (2.4) BS01 peptide 3.4.21.107 GO:0004252 ... P0AEE3 15137941
    47006 1soz:B (2.4) BS01 peptide 3.4.21.107 GO:0004252 ... P0AEE3 15137941
    47007 1sp3:A (2.2) BS01 HEC ? GO:0016491 ... Q8E9W8 15361860
    47008 1sp3:A (2.2) BS02 HEC ? GO:0016491 ... Q8E9W8 15361860
    47009 1sp3:A (2.2) BS03 HEC ? GO:0016491 ... Q8E9W8 15361860
    47010 1sp3:A (2.2) BS04 HEC ? GO:0016491 ... Q8E9W8 15361860
    47011 1sp3:A (2.2) BS05 HEC ? GO:0016491 ... Q8E9W8 15361860
    47012 1sp3:A (2.2) BS06 HEC ? GO:0016491 ... Q8E9W8 15361860
    47013 1sp3:A (2.2) BS07 HEC ? GO:0016491 ... Q8E9W8 15361860
    47014 1sp3:A (2.2) BS08 HEC ? GO:0016491 ... Q8E9W8 15361860
    47015 1sp4:A (2.2) BS01 EP2 3.4.22.1 GO:0006508 ... P07688 15084146
    47016 1sp4:B (2.2) BS01 EP2 3.4.22.1 GO:0006508 ... P07688 15084146
    47017 1sp5:A (1.8) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03367 N/A
    47018 1sp5:B (1.8) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03367 N/A
    47019 1sp8:A (2.0) BS01 FE2 N/A GO:0003868 ... N/A 15084729
    47020 1sp8:B (2.0) BS01 FE2 N/A GO:0003868 ... N/A 15084729
    47021 1sp8:C (2.0) BS01 FE2 N/A GO:0003868 ... N/A 15084729
    47022 1sp8:D (2.0) BS01 FE2 N/A GO:0003868 ... N/A 15084729
    47023 1sp9:A (3.0) BS01 FE2 1.13.11.27 GO:0003868 ... P93836 15084729
    47024 1sp9:B (3.0) BS01 FE2 1.13.11.27 GO:0003868 ... P93836 15084729
    47025 1spa:A (2.0) BS01 NPL 2.6.1.1 GO:0003824 ... P00509 1610831
    47026 1spd:A (2.4) BS01 CU 1.15.1.1 GO:0000302 ... P00441 8351519
    47027 1spd:A (2.4) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 8351519
    47028 1spd:B (2.4) BS01 CU 1.15.1.1 GO:0000302 ... P00441 8351519
    47029 1spd:B (2.4) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 8351519
    47030 1spe:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 8642596
    47031 1spg:A (1.95) BS01 HEM ? GO:0004601 ... P56250 8605630
    47032 1spg:B (1.95) BS01 HEM ? GO:0004601 ... P56251 8605630
    47033 1spj:A (1.7) BS01 CA 3.4.21.35 GO:0003073 ... P06870 15651049
    47034 1spu:A (2.0) BS01 CU 1.4.3.21 GO:0005507 ... P46883 9048544
    47035 1spu:A (2.0) BS02 CA 1.4.3.21 GO:0005507 ... P46883 9048544
    47036 1spu:A (2.0) BS03 CA 1.4.3.21 GO:0005507 ... P46883 9048544
    47037 1spu:B (2.0) BS01 CU 1.4.3.21 GO:0005507 ... P46883 9048544
    47038 1spu:B (2.0) BS02 CA 1.4.3.21 GO:0005507 ... P46883 9048544
    47039 1spu:B (2.0) BS03 CA 1.4.3.21 GO:0005507 ... P46883 9048544
    47040 1sq3:A (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    47041 1sq3:A (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    47042 1sq3:A (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    47043 1sq3:B (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    47044 1sq3:B (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    47045 1sq3:B (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    47046 1sq3:C (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    47047 1sq3:C (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    47048 1sq3:C (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    47049 1sq3:D (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    47050 1sq3:D (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    47051 1sq3:D (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    47052 1sq3:E (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    47053 1sq3:E (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    47054 1sq3:E (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    47055 1sq3:F (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    47056 1sq3:F (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    47057 1sq3:F (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    47058 1sq3:G (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    47059 1sq3:G (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    47060 1sq3:G (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    47061 1sq3:H (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    47062 1sq3:H (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    47063 1sq3:H (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    47064 1sq3:I (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    47065 1sq3:I (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    47066 1sq3:I (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    47067 1sq3:J (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    47068 1sq3:J (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    47069 1sq3:J (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    47070 1sq3:K (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    47071 1sq3:K (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    47072 1sq3:K (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    47073 1sq3:L (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    47074 1sq3:L (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    47075 1sq3:L (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    47076 1sq5:A (2.2) BS01 PAU 2.7.1.33 GO:0004594 ... P0A6I3 15136582
    47077 1sq5:A (2.2) BS02 ADP 2.7.1.33 GO:0004594 ... P0A6I3 15136582
    47078 1sq5:B (2.2) BS01 PAU 2.7.1.33 GO:0004594 ... P0A6I3 15136582
    47079 1sq5:B (2.2) BS02 ADP 2.7.1.33 GO:0004594 ... P0A6I3 15136582
    47080 1sq5:C (2.2) BS01 PAU 2.7.1.33 GO:0004594 ... P0A6I3 15136582
    47081 1sq5:C (2.2) BS02 ADP 2.7.1.33 GO:0004594 ... P0A6I3 15136582
    47082 1sq5:D (2.2) BS01 PAU 2.7.1.33 GO:0004594 ... P0A6I3 15136582
    47083 1sq5:D (2.2) BS02 ADP 2.7.1.33 GO:0004594 ... P0A6I3 15136582
    47084 1sq6:A (2.4) BS01 SO4 2.4.2.1
    2.4.2.44
    GO:0003824 ... Q8I3X4 16131758
    47085 1sqa:A (2.0) BS01 UI1 3.4.21.73 GO:0004252 ... P00749 15149645 MOAD: Ki=0.00062uM
    PDBbind: -logKd/Ki=9.21, Ki=0.62nM
    BindingDB: IC50=620nM, Ki=0.620000nM
    47086 1sqb:C (2.69) BS01 HEM 1.10.2.2 GO:0005739 ... P00157 15312779
    47087 1sqb:C (2.69) BS02 HEM 1.10.2.2 GO:0005739 ... P00157 15312779
    47088 1sqb:C (2.69) BS03 AZO 1.10.2.2 GO:0005739 ... P00157 15312779 PDBbind: -logKd/Ki=7.95, IC50=11.2nM
    47089 1sqb:D (2.69) BS01 HEM 7.1.1.8 GO:0009055 ... P00125 15312779
    47090 1sqb:E (2.69) BS01 FES 7.1.1.8 GO:0008121 ... P13272 15312779
    47091 1sqd:A (1.8) BS01 FE 1.13.11.27 GO:0003868 ... P93836 15301540
    47092 1sqf:A (2.1) BS01 SAM 2.1.1.176 GO:0001510 ... P36929 14656444
    47093 1sqi:A (2.15) BS01 FE 1.13.11.27 GO:0000139 ... P32755 15301540
    47094 1sqi:A (2.15) BS02 869 1.13.11.27 GO:0000139 ... P32755 15301540 MOAD: ic50<20nM
    PDBbind: -logKd/Ki=7.70, IC50<20nM
    47095 1sqi:B (2.15) BS01 FE 1.13.11.27 GO:0000139 ... P32755 15301540
    47096 1sqi:B (2.15) BS02 869 1.13.11.27 GO:0000139 ... P32755 15301540 MOAD: ic50<20nM
    47097 1sqk:A (2.5) BS01 peptide 3.6.4.- GO:0000287 ... P68135 15163409
    47098 1sqk:A (2.5) BS02 ADP 3.6.4.- GO:0000287 ... P68135 15163409
    47099 1sqk:A (2.5) BS03 LAR 3.6.4.- GO:0000287 ... P68135 15163409
    47100 1sqm:A (2.3) BS01 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 15078870
    47101 1sqo:A (1.84) BS01 UI2 3.4.21.73 GO:0004252 ... P00749 15149645 MOAD: Ki=0.035uM
    PDBbind: -logKd/Ki=7.46, Ki=0.035uM
    BindingDB: Ki=32nM
    47102 1sqp:C (2.7) BS01 HEC ? GO:0005739 ... P00157 15312779
    47103 1sqp:C (2.7) BS02 HEC ? GO:0005739 ... P00157 15312779
    47104 1sqp:C (2.7) BS03 MYX ? GO:0005739 ... P00157 15312779 PDBbind: -logKd/Ki=8.20, IC50=6.3nM
    47105 1sqp:D (2.7) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 15312779
    47106 1sqp:E (2.7) BS01 FES 7.1.1.8 GO:0008121 ... P13272 15312779
    47107 1sqp:E (2.7) BS02 PLX 7.1.1.8 GO:0008121 ... P13272 15312779
    47108 1sqp:J (2.7) BS01 PLX 1.10.2.2 GO:0005739 ... P00130 15312779
    47109 1sqq:C (3.0) BS01 HEC ? GO:0005739 ... P00157 15312779
    47110 1sqq:C (3.0) BS02 HEC ? GO:0005739 ... P00157 15312779
    47111 1sqq:C (3.0) BS03 UQ2 ? GO:0005739 ... P00157 15312779
    47112 1sqq:C (3.0) BS04 OST ? GO:0005739 ... P00157 15312779 PDBbind: -logKd/Ki=7.82, Kd=15nM
    47113 1sqq:D (3.0) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 15312779
    47114 1sqq:E (3.0) BS01 FES 7.1.1.8 GO:0008121 ... P13272 15312779
    47115 1sqt:A (1.9) BS01 UI3 3.4.21.73 GO:0004252 ... P00749 15149645 MOAD: Ki=0.63uM
    PDBbind: -logKd/Ki=6.20, Ki=0.63uM
    BindingDB: Ki=630nM
    47116 1sqv:C (2.85) BS01 HEC 1.10.2.2 GO:0005739 ... P00157 15312779
    47117 1sqv:C (2.85) BS02 HEC 1.10.2.2 GO:0005739 ... P00157 15312779
    47118 1sqv:C (2.85) BS03 UHD 1.10.2.2 GO:0005739 ... P00157 15312779
    47119 1sqv:C (2.85) BS04 UQ2 1.10.2.2 GO:0005739 ... P00157 15312779
    47120 1sqv:D (2.85) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 15312779
    47121 1sqv:E (2.85) BS01 FES 7.1.1.8 GO:0008121 ... P13272 15312779
    47122 1sqx:C (2.6) BS01 UQ2 ? GO:0005739 ... P00157 15312779
    47123 1sqx:C (2.6) BS02 HEC ? GO:0005739 ... P00157 15312779
    47124 1sqx:C (2.6) BS03 HEC ? GO:0005739 ... P00157 15312779
    47125 1sqx:C (2.6) BS04 SMA ? GO:0005739 ... P00157 15312779
    47126 1sqx:D (2.6) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 15312779
    47127 1sqx:E (2.6) BS01 FES 7.1.1.8 GO:0008121 ... P13272 15312779
    47128 1sqy:A (2.5) BS01 FE 3.4.21.- GO:0001503 ... P02788 N/A
    47129 1sqy:A (2.5) BS02 FE 3.4.21.- GO:0001503 ... P02788 N/A
    47130 1sqy:A (2.5) BS03 CO3 3.4.21.- GO:0001503 ... P02788 N/A
    47131 1sqy:A (2.5) BS04 CO3 3.4.21.- GO:0001503 ... P02788 N/A
    47132 1sqz:A (1.2) BS01 peptide 3.1.1.4 GO:0004623 ... P59071 N/A
    47133 1sr5:A (3.1) BS01 YYB ? GO:0002020 ... P01008 15311268
    47134 1sr5:A (3.1) BS02 U9J ? GO:0002020 ... P01008 15311268
    47135 1sr5:A (3.1) BS03 GU6 ? GO:0002020 ... P01008 15311268
    47136 1sr5:A (3.1) BS04 U9G ? GO:0002020 ... P01008 15311268
    47137 1sr6:B (2.75) BS01 MG ? GO:0005509 ... P13543 15184651
    47138 1sr6:C (2.75) BS01 CA ? GO:0005509 ... P07291 15184651
    47139 1sr9:A (2.0) BS01 ZN 2.3.3.13 GO:0000287 ... P9WQB3 15159544
    47140 1sr9:A (2.0) BS02 KIV 2.3.3.13 GO:0000287 ... P9WQB3 15159544
    47141 1sr9:B (2.0) BS01 ZN 2.3.3.13 GO:0000287 ... P9WQB3 15159544
    47142 1sr9:B (2.0) BS02 KIV 2.3.3.13 GO:0000287 ... P9WQB3 15159544
    47143 1sra:A (2.0) BS01 CA ? GO:0005509 ... P09486 8548457
    47144 1sra:A (2.0) BS02 CA ? GO:0005509 ... P09486 8548457
    47145 1sra:A (2.0) BS03 CA ? GO:0005509 ... P09486 8548457
    47146 1srd:A (2.0) BS01 CU 1.15.1.1 GO:0005507 ... P07505 1880134
    47147 1srd:A (2.0) BS02 ZN 1.15.1.1 GO:0005507 ... P07505 1880134
    47148 1srd:B (2.0) BS01 CU 1.15.1.1 GO:0005507 ... P07505 1880134
    47149 1srd:B (2.0) BS02 ZN 1.15.1.1 GO:0005507 ... P07505 1880134
    47150 1srd:C (2.0) BS01 CU 1.15.1.1 GO:0005507 ... P07505 1880134
    47151 1srd:C (2.0) BS02 ZN 1.15.1.1 GO:0005507 ... P07505 1880134
    47152 1srd:D (2.0) BS01 CU 1.15.1.1 GO:0005507 ... P07505 1880134
    47153 1srd:D (2.0) BS02 ZN 1.15.1.1 GO:0005507 ... P07505 1880134
    47154 1sre:A (1.78) BS01 HAB ? GO:0009374 ... P22629 N/A PDBbind: -logKd/Ki=3.85, Kd=0.14mM
    47155 1sre:B (1.78) BS01 HAB ? GO:0009374 ... P22629 N/A
    47156 1srf:A (2.0) BS01 MTB ? GO:0009374 ... P22629 N/A
    47157 1srf:B (2.0) BS01 MTB ? GO:0009374 ... P22629 N/A
    47158 1srg:A (1.8) BS01 MHB ? GO:0009374 ... P22629 N/A MOAD: Ka=200000M^-1
    PDBbind: -logKd/Ki=5.30, Kd=5uM
    47159 1srg:B (1.8) BS01 MHB ? GO:0009374 ... P22629 N/A MOAD: Ka=200000M^-1
    47160 1srh:A (2.2) BS01 MOB ? GO:0009374 ... P22629 N/A
    47161 1srh:B (2.2) BS01 MOB ? GO:0009374 ... P22629 N/A
    47162 1sri:A (1.65) BS01 DMB ? GO:0009374 ... P22629 N/A MOAD: Ka=1200000M^-1
    PDBbind: -logKd/Ki=6.08, Kd=0.83uM
    47163 1sri:B (1.65) BS01 DMB ? GO:0009374 ... P22629 N/A MOAD: Ka=1200000M^-1
    PDBbind: -logKd/Ki=6.08, Kd=0.83uM
    47164 1srj:A (1.8) BS01 NAB ? GO:0009374 ... P22629 N/A
    47165 1srj:B (1.8) BS01 NAB ? GO:0009374 ... P22629 N/A
    47166 1srn:A (1.8) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 3680234
    47167 1srp:A (2.0) BS01 CA 3.4.24.40 GO:0004222 ... P07268 8797082
    47168 1srp:A (2.0) BS02 CA 3.4.24.40 GO:0004222 ... P07268 8797082
    47169 1srp:A (2.0) BS03 CA 3.4.24.40 GO:0004222 ... P07268 8797082
    47170 1srp:A (2.0) BS04 CA 3.4.24.40 GO:0004222 ... P07268 8797082
    47171 1srp:A (2.0) BS05 CA 3.4.24.40 GO:0004222 ... P07268 8797082
    47172 1srp:A (2.0) BS06 CA 3.4.24.40 GO:0004222 ... P07268 8797082
    47173 1srp:A (2.0) BS07 CA 3.4.24.40 GO:0004222 ... P07268 8797082
    47174 1srp:A (2.0) BS08 ZN 3.4.24.40 GO:0004222 ... P07268 8797082
    47175 1srr:A (1.9) BS01 CA 2.7.-.- GO:0000160 ... P06628 8805550
    47176 1srr:C (1.9) BS01 CA 2.7.-.- GO:0000160 ... P06628 8805550
    47177 1srs:A (3.2) BS01 dna ? GO:0000981 ... P11831 7637780
    47178 1srs:A (3.2) BS02 dna ? GO:0000981 ... P11831 7637780
    47179 1srs:B (3.2) BS01 dna ? GO:0000981 ... P11831 7637780
    47180 1srs:B (3.2) BS02 dna ? GO:0000981 ... P11831 7637780
    47181 1ss4:B (1.84) BS01 GSH ? GO:0004493 ... Q81F54 N/A
    47182 1ss9:A (2.6) BS01 MN 2.4.1.44 GO:0016740 ... Q93EK7 15075344
    47183 1ss9:A (2.6) BS02 UPF 2.4.1.44 GO:0016740 ... Q93EK7 15075344
    47184 1ssa:A (2.0) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 8142897
    47185 1ssb:A (2.0) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 8142897
    47186 1ssc:A (2.0) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 15299768
    47187 1ssg:A (2.9) BS01 PGA 4.2.3.3
    5.3.1.1
    GO:0004807 ... P00940 15166315
    47188 1ssg:B (2.9) BS01 PGA 4.2.3.3
    5.3.1.1
    GO:0004807 ... P00940 15166315
    47189 1ssh:A (1.4) BS01 peptide ? GO:0006897 ... P43603 N/A
    47190 1ssp:E (1.9) BS01 dna 3.2.2.27 GO:0004844 ... P13051 9724657 PDBbind: Kd=48nM
    47191 1ssp:E (1.9) BS02 URA 3.2.2.27 GO:0004844 ... P13051 9724657
    47192 1ssq:A (1.85) BS01 CYS 2.3.1.30 GO:0005737 ... P43886 15147185 MOAD: Ki=1uM
    PDBbind: -logKd/Ki=6.00, Ki=1uM
    47193 1ssq:D (1.85) BS01 CYS 2.3.1.30 GO:0005737 ... P43886 15147185
    47194 1sst:A (2.0) BS01 COA 2.3.1.30 GO:0005737 ... P43886 15147185
    47195 1sst:A (2.0) BS02 COA 2.3.1.30 GO:0005737 ... P43886 15147185
    47196 1sst:B (2.0) BS01 COA 2.3.1.30 GO:0005737 ... P43886 15147185
    47197 1sst:B (2.0) BS02 COA 2.3.1.30 GO:0005737 ... P43886 15147185
    47198 1sst:C (2.0) BS01 COA 2.3.1.30 GO:0005737 ... P43886 15147185
    47199 1sst:C (2.0) BS02 COA 2.3.1.30 GO:0005737 ... P43886 15147185
    47200 1ssx:A (0.83) BS01 SO4 3.4.21.12 GO:0004252 ... P00778 15111063

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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