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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    46601 1sks:A (2.3) BS01 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    46602 1sks:A (2.3) BS02 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    46603 1sku:D (2.6) BS01 ZN 2.1.3.2 GO:0005515 ... P0A7F3 15014067
    46604 1skw:A (2.3) BS01 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    46605 1skw:A (2.3) BS02 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    46606 1skx:A (2.8) BS01 RFP ? GO:0003677 ... O75469 15705662 BindingDB: EC50=3500nM
    46607 1sl0:A (3.2) BS01 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    46608 1sl0:A (3.2) BS02 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    46609 1sl0:A (3.2) BS03 DAD 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    46610 1sl0:C (3.2) BS01 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    46611 1sl0:C (3.2) BS02 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    46612 1sl1:A (2.2) BS01 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    46613 1sl1:A (2.2) BS02 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    46614 1sl2:A (2.3) BS01 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    46615 1sl2:A (2.3) BS02 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    46616 1sl2:A (2.3) BS03 MG 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    46617 1sl2:A (2.3) BS04 MG 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    46618 1sl2:A (2.3) BS05 DAD 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    46619 1sl3:A (1.81) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 15163182
    46620 1sl3:A (1.81) BS02 170 3.4.21.5 GO:0004252 ... P00734 15163182 MOAD: Ki=1.4pM
    PDBbind: -logKd/Ki=11.85, Ki=1.4pM
    BindingDB: Ki=0.001400nM
    46621 1sl7:A (2.2) BS01 CA ? GO:0005509 ... Q27709 15689515
    46622 1sl7:A (2.2) BS02 CA ? GO:0005509 ... Q27709 15689515
    46623 1sl7:A (2.2) BS03 CA ? GO:0005509 ... Q27709 15689515
    46624 1sl8:A (1.7) BS01 CA ? GO:0005509 ... P07164 15689515
    46625 1sl8:A (1.7) BS02 CA ? GO:0005509 ... P07164 15689515
    46626 1sl8:A (1.7) BS03 CA ? GO:0005509 ... P07164 15689515
    46627 1sl9:A (1.17) BS01 CZH ? GO:0005509 ... Q27709 N/A
    46628 1sla:A (2.45) BS01 GAL ? GO:0005576 ... P11116 7773775
    46629 1slb:A (2.3) BS01 GAL ? GO:0005576 ... P11116 7773775
    46630 1slb:C (2.3) BS01 GAL ? GO:0005576 ... P11116 7773775
    46631 1slc:A (2.15) BS01 GAL ? GO:0005576 ... P11116 7773775
    46632 1slc:B (2.15) BS01 GAL ? GO:0005576 ... P11116 7773775
    46633 1sld:B (2.5) BS01 peptide ? GO:0009374 ... P22629 7492542
    46634 1sle:B (2.0) BS01 peptide ? GO:0009374 ... P22629 7492542
    46635 1sle:D (2.0) BS01 peptide ? GO:0009374 ... P22629 7492542
    46636 1slf:B (1.76) BS01 SO4 ? GO:0009374 ... P22629 7492542
    46637 1slf:B (1.76) BS02 SO4 ? GO:0009374 ... P22629 7492542
    46638 1slf:D (1.76) BS01 SO4 ? GO:0009374 ... P22629 7492542
    46639 1slf:D (1.76) BS02 SO4 ? GO:0009374 ... P22629 7492542
    46640 1slg:B (1.76) BS01 peptide ? GO:0009374 ... P22629 7492542
    46641 1slg:D (1.76) BS01 peptide ? GO:0009374 ... P22629 7492542
    46642 1sli:A (2.0) BS01 DAN 4.2.2.15 GO:0004308 ... Q27701 9562562
    46643 1slm:A (1.9) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 8535233
    46644 1slm:A (1.9) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 8535233
    46645 1slm:A (1.9) BS03 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    46646 1slm:A (1.9) BS04 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    46647 1sln:A (2.27) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 8535233
    46648 1sln:A (2.27) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 8535233
    46649 1sln:A (2.27) BS03 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    46650 1sln:A (2.27) BS04 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    46651 1sln:A (2.27) BS05 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    46652 1sln:A (2.27) BS06 8MI 3.4.24.17 GO:0004222 ... P08254 8535233
    46653 1slt:A (1.9) BS01 GAL ? GO:0005576 ... P11116 8108426
    46654 1slt:B (1.9) BS01 GAL ? GO:0005576 ... P11116 8108426
    46655 1slu:B (1.8) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8634241
    46656 1slv:B (2.3) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8634241
    46657 1slv:B (2.3) BS02 CU 3.4.21.4 GO:0004252 ... P00763 8634241
    46658 1slw:B (2.0) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8634241
    46659 1slx:B (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8634241
    46660 1slx:B (2.2) BS02 ZN 3.4.21.4 GO:0004252 ... P00763 8634241
    46661 1sly:A (2.8) BS01 BLG 4.2.2.n1 GO:0000270 ... P0AGC3 7548026
    46662 1sm1:1 (3.42) BS01 rna ? GO:0000049 ... Q9RSS4 15059283
    46663 1sm1:A (3.42) BS01 rna ? GO:0002181 ... Q9RXJ9 15059283
    46664 1sm1:B (3.42) BS01 rna ? GO:0003735 ... Q9RXK2 15059283
    46665 1sm1:C (3.42) BS01 rna ? GO:0003735 ... Q9RXK1 15059283
    46666 1sm1:G (3.42) BS01 rna ? GO:0003735 ... Q9RSS7 15059283
    46667 1sm1:H (3.42) BS01 rna ? GO:0003729 ... Q9RXY1 15059283
    46668 1sm1:I (3.42) BS01 rna ? GO:0003735 ... Q9RXJ2 15059283
    46669 1sm1:J (3.42) BS01 rna ? GO:0003735 ... Q9RSK9 15059283
    46670 1sm1:L (3.42) BS01 rna ? GO:0003735 ... Q9RSJ5 15059283
    46671 1sm1:O (3.42) BS01 rna ? GO:0000027 ... Q9RSW7 15059283
    46672 1sm1:P (3.42) BS01 rna ? GO:0003723 ... Q9RY64 15059283
    46673 1sm1:Q (3.42) BS01 rna ? GO:0003735 ... Q9RXJ7 15059283
    46674 1sm1:S (3.42) BS01 rna ? GO:0003723 ... Q9RXJ1 15059283
    46675 1sm1:T (3.42) BS01 rna ? GO:0000049 ... Q9RX88 15059283
    46676 1sm1:X (3.42) BS01 rna ? GO:0003735 ... Q9RSL0 15059283
    46677 1sm1:Y (3.42) BS01 rna ? GO:0000049 ... Q9RW44 15059283
    46678 1sm1:Z (3.42) BS01 rna ? GO:0003735 ... P49228 15059283
    46679 1sm2:A (2.3) BS01 STU 2.7.10.2 GO:0004672 ... Q08881 14766749 MOAD: Ki<10nM
    PDBbind: -logKd/Ki=8.00, Ki<10nM
    46680 1sm2:B (2.3) BS01 STU 2.7.10.2 GO:0004672 ... Q08881 14766749 MOAD: Ki<10nM
    46681 1sm3:L (1.95) BS01 peptide ? GO:0002250 ... P01723 9826510
    46682 1sm4:A (2.5) BS01 FAD 1.18.1.2 GO:0016491 ... Q9M4D2 11053431
    46683 1sm4:B (2.5) BS01 FAD 1.18.1.2 GO:0016491 ... Q9M4D2 11053431
    46684 1sm8:A (2.9) BS01 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    46685 1sm8:A (2.9) BS02 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    46686 1sm8:B (2.9) BS01 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    46687 1sm8:B (2.9) BS02 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    46688 1sm8:C (2.9) BS01 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    46689 1sm8:C (2.9) BS02 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    46690 1sm9:A (2.2) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 15320875
    46691 1sm9:B (2.2) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 15320875
    46692 1sm9:C (2.2) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 15320875
    46693 1sm9:D (2.2) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 15320875
    46694 1smc:A (2.1) BS01 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    46695 1smc:A (2.1) BS02 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    46696 1smc:B (2.1) BS01 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    46697 1smc:B (2.1) BS02 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    46698 1smc:C (2.1) BS01 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    46699 1smc:C (2.1) BS02 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    46700 1smd:A (1.6) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 15299664
    46701 1smd:A (1.6) BS02 CL 3.2.1.1 GO:0003824 ... P0DUB6 15299664
    46702 1sme:A (2.7) BS01 peptide 3.4.23.39 GO:0004190 ... P46925 8816746
    46703 1sme:B (2.7) BS01 peptide 3.4.23.39 GO:0004190 ... P46925 8816746
    46704 1smf:E (2.1) BS01 peptide 3.4.21.4 GO:0004175 ... P00760 7798176
    46705 1smf:E (2.1) BS02 CA 3.4.21.4 GO:0004175 ... P00760 7798176
    46706 1smg:A (-1.00) BS01 CA ? GO:0005509 ... P02588 9109645
    46707 1smh:A (2.044) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 15196017
    46708 1smh:A (2.044) BS02 BU3 2.7.11.11 GO:0001669 ... P00517 15196017
    46709 1smh:A (2.044) BS03 BU3 2.7.11.11 GO:0001669 ... P00517 15196017
    46710 1smh:A (2.044) BS04 BU3 2.7.11.11 GO:0001669 ... P00517 15196017
    46711 1smh:A (2.044) BS05 MG8 2.7.11.11 GO:0001669 ... P00517 15196017
    46712 1smi:A (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 15020590
    46713 1smi:B (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 15020590
    46714 1smj:A (2.75) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 15020590
    46715 1smj:B (2.75) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 15020590
    46716 1smj:C (2.75) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 15020590
    46717 1smj:D (2.75) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 15020590
    46718 1sml:A (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 9811546
    46719 1sml:A (1.7) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 9811546
    46720 1smm:A (1.36) BS01 FE ? GO:0005506 ... P00268 15067525
    46721 1smp:A (2.3) BS01 ZN 3.4.24.40 GO:0001907 ... P23694 7752231
    46722 1smp:A (2.3) BS02 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    46723 1smp:A (2.3) BS03 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    46724 1smp:A (2.3) BS04 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    46725 1smp:A (2.3) BS05 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    46726 1smp:A (2.3) BS06 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    46727 1smp:A (2.3) BS07 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    46728 1smp:A (2.3) BS08 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    46729 1smr:A (2.0) BS01 peptide 3.4.23.15 GO:0004190 ... P00796 8107115
    46730 1smr:C (2.0) BS01 peptide 3.4.23.15 GO:0004190 ... P00796 8107115
    46731 1smr:E (2.0) BS01 peptide 3.4.23.15 GO:0004190 ... P00796 8107115
    46732 1smr:G (2.0) BS01 peptide 3.4.23.15 GO:0004190 ... P00796 8107115
    46733 1smu:A (1.43) BS01 FE2 ? GO:0005506 ... P00268 15067525
    46734 1smv:A (3.0) BS01 CA ? GO:0005198 ... Q9EB06 8589997
    46735 1smv:A (3.0) BS02 CA ? GO:0005198 ... Q9EB06 8589997
    46736 1smv:B (3.0) BS01 CA ? GO:0005198 ... Q9EB06 8589997
    46737 1smv:B (3.0) BS02 CA ? GO:0005198 ... Q9EB06 8589997
    46738 1smv:C (3.0) BS01 CA ? GO:0005198 ... Q9EB06 8589997
    46739 1smv:C (3.0) BS02 CA ? GO:0005198 ... Q9EB06 8589997
    46740 1smw:A (1.38) BS01 FE2 ? GO:0005506 ... P00268 15067525
    46741 1smy:A (2.7) BS01 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    46742 1smy:A (2.7) BS02 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    46743 1smy:A (2.7) BS03 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    46744 1smy:A (2.7) BS04 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    46745 1smy:A (2.7) BS05 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    46746 1smy:B (2.7) BS01 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    46747 1smy:B (2.7) BS02 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    46748 1smy:B (2.7) BS03 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    46749 1smy:B (2.7) BS04 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    46750 1smy:B (2.7) BS05 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    46751 1smy:B (2.7) BS06 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    46752 1smy:B (2.7) BS07 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    46753 1smy:B (2.7) BS08 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    46754 1smy:B (2.7) BS09 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    46755 1smy:C (2.7) BS01 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46756 1smy:C (2.7) BS02 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46757 1smy:C (2.7) BS03 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46758 1smy:C (2.7) BS04 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46759 1smy:C (2.7) BS05 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46760 1smy:C (2.7) BS06 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46761 1smy:C (2.7) BS07 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46762 1smy:C (2.7) BS08 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46763 1smy:C (2.7) BS09 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46764 1smy:C (2.7) BS10 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46765 1smy:C (2.7) BS11 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46766 1smy:C (2.7) BS12 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46767 1smy:C (2.7) BS13 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46768 1smy:C (2.7) BS14 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46769 1smy:C (2.7) BS15 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46770 1smy:C (2.7) BS16 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46771 1smy:C (2.7) BS17 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46772 1smy:C (2.7) BS18 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46773 1smy:C (2.7) BS19 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46774 1smy:C (2.7) BS20 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46775 1smy:C (2.7) BS21 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46776 1smy:C (2.7) BS22 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46777 1smy:C (2.7) BS23 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46778 1smy:C (2.7) BS24 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46779 1smy:C (2.7) BS25 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46780 1smy:C (2.7) BS26 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46781 1smy:C (2.7) BS27 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46782 1smy:C (2.7) BS28 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46783 1smy:C (2.7) BS29 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46784 1smy:C (2.7) BS30 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46785 1smy:C (2.7) BS31 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46786 1smy:C (2.7) BS32 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46787 1smy:C (2.7) BS33 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46788 1smy:C (2.7) BS34 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46789 1smy:C (2.7) BS35 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46790 1smy:C (2.7) BS36 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46791 1smy:D (2.7) BS01 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    46792 1smy:D (2.7) BS02 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    46793 1smy:D (2.7) BS03 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    46794 1smy:D (2.7) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    46795 1smy:D (2.7) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    46796 1smy:D (2.7) BS06 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    46797 1smy:D (2.7) BS07 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    46798 1smy:D (2.7) BS08 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    46799 1smy:D (2.7) BS09 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    46800 1smy:D (2.7) BS10 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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