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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    46401 1shr:B (1.88) BS01 CYN ? GO:0004601 ... P02042 15449937
    46402 1shr:B (1.88) BS02 FE ? GO:0004601 ... P02042 15449937
    46403 1shr:B (1.88) BS03 CYN ? GO:0004601 ... P02042 15449937
    46404 1shr:B (1.88) BS04 CYN ? GO:0004601 ... P02042 15449937
    46405 1shr:B (1.88) BS05 HEM ? GO:0004601 ... P02042 15449937
    46406 1shr:C (1.88) BS01 CYN ? GO:0004601 ... P69905 15449937
    46407 1shr:C (1.88) BS02 HEM ? GO:0004601 ... P69905 15449937
    46408 1shr:D (1.88) BS01 CYN ? GO:0004601 ... P02042 15449937
    46409 1shr:D (1.88) BS02 CYN ? GO:0004601 ... P02042 15449937
    46410 1shr:D (1.88) BS03 CYN ? GO:0004601 ... P02042 15449937
    46411 1shr:D (1.88) BS04 HEM ? GO:0004601 ... P02042 15449937
    46412 1shv:A (1.98) BS01 MA4 3.5.2.6 GO:0008800 ... P0AD64 10231522
    46413 1shw:A (2.2) BS01 ZN ? GO:0016020 ... O08543 15107857
    46414 1shz:A (2.85) BS01 MG ? GO:0003924 ... P10824
    P27601    		 15665872
    46415 1shz:A (2.85) BS02 ALF ? GO:0003924 ... P10824
    P27601    		 15665872
    46416 1shz:A (2.85) BS03 GDP ? GO:0003924 ... P10824
    P27601    		 15665872
    46417 1shz:D (2.85) BS01 MG ? GO:0003924 ... P10824
    P27601    		 15665872
    46418 1shz:D (2.85) BS02 ALF ? GO:0003924 ... P10824
    P27601    		 15665872
    46419 1shz:D (2.85) BS03 GDP ? GO:0003924 ... P10824
    P27601    		 15665872
    46420 1si0:A (1.35) BS01 FE ? GO:0030288 ... Q9Z4N6 15175304
    46421 1si0:A (1.35) BS02 CO3 ? GO:0030288 ... Q9Z4N6 15175304
    46422 1si1:A (1.45) BS01 FE ? GO:0030288 ... Q9Z4N6 15175304
    46423 1si2:A (2.6) BS01 rna ? GO:0003723 ... Q9UL18 15152257 PDBbind: Kd=0.89nM
    46424 1si3:A (2.6) BS01 rna ? GO:0003723 ... Q9UL18 15152257 PDBbind: Kd=2.18nM
    46425 1si4:A (2.2) BS01 CYN ? GO:0004601 ... P69905 15449937
    46426 1si4:A (2.2) BS02 HEM ? GO:0004601 ... P69905 15449937
    46427 1si4:B (2.2) BS01 CYN ? GO:0004601 ... P02042 15449937
    46428 1si4:B (2.2) BS02 HEM ? GO:0004601 ... P02042 15449937
    46429 1si4:C (2.2) BS01 CYN ? GO:0004601 ... P69905 15449937
    46430 1si4:C (2.2) BS02 HEM ? GO:0004601 ... P69905 15449937
    46431 1si4:D (2.2) BS01 HEM ? GO:0004601 ... P02042 15449937
    46432 1si6:X (1.45) BS01 HEM ? GO:0004439 ... O76745 N/A
    46433 1si8:A (2.3) BS01 SO4 1.11.1.6 GO:0004096 ... Q834P5 15272159
    46434 1si8:A (2.3) BS02 HEM 1.11.1.6 GO:0004096 ... Q834P5 15272159
    46435 1si8:B (2.3) BS01 SO4 1.11.1.6 GO:0004096 ... Q834P5 15272159
    46436 1si8:B (2.3) BS02 HEM 1.11.1.6 GO:0004096 ... Q834P5 15272159
    46437 1si8:C (2.3) BS01 SO4 1.11.1.6 GO:0004096 ... Q834P5 15272159
    46438 1si8:C (2.3) BS02 HEM 1.11.1.6 GO:0004096 ... Q834P5 15272159
    46439 1si8:D (2.3) BS01 SO4 1.11.1.6 GO:0004096 ... Q834P5 15272159
    46440 1si8:D (2.3) BS02 HEM 1.11.1.6 GO:0004096 ... Q834P5 15272159
    46441 1sib:E (2.4) BS01 CA 3.4.21.62 GO:0004252 ... P00782 1992167
    46442 1sib:E (2.4) BS02 CA 3.4.21.62 GO:0004252 ... P00782 1992167
    46443 1sid:A (3.65) BS01 GAL ? GO:0005198 ... P49302 8805524
    46444 1sid:A (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    46445 1sid:B (3.65) BS01 GAL ? GO:0005198 ... P49302 8805524
    46446 1sid:B (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    46447 1sid:C (3.65) BS01 GAL ? GO:0005198 ... P49302 8805524
    46448 1sid:C (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    46449 1sid:D (3.65) BS01 GAL ? GO:0005198 ... P49302 8805524
    46450 1sid:D (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    46451 1sid:E (3.65) BS01 GAL ? GO:0005198 ... P49302 8805524
    46452 1sid:E (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    46453 1sid:F (3.65) BS01 GAL ? GO:0005198 ... P49302 8805524
    46454 1sid:F (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    46455 1sie:A (3.65) BS01 GAL ? GO:0005198 ... P49302 8805524
    46456 1sie:A (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    46457 1sie:B (3.65) BS01 GAL ? GO:0005198 ... P49302 8805524
    46458 1sie:B (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    46459 1sie:C (3.65) BS01 SIA ? GO:0005198 ... P49302 8805524
    46460 1sie:D (3.65) BS01 SIA ? GO:0005198 ... P49302 8805524
    46461 1sie:E (3.65) BS01 GAL ? GO:0005198 ... P49302 8805524
    46462 1sie:E (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    46463 1sie:F (3.65) BS01 GAL ? GO:0005198 ... P49302 8805524
    46464 1sie:F (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    46465 1sih:A (1.73) BS01 CU 1.4.3.21 GO:0005507 ... P46881 15323556
    46466 1sii:A (1.7) BS01 CU 1.4.3.21 GO:0005507 ... P46881 15323556
    46467 1sij:A (2.3) BS01 MG 1.2.99.7 GO:0005506 ... Q46509 15250689
    46468 1sij:A (2.3) BS02 PCD 1.2.99.7 GO:0005506 ... Q46509 15250689
    46469 1sij:A (2.3) BS03 AST 1.2.99.7 GO:0005506 ... Q46509 15250689
    46470 1sij:A (2.3) BS04 FES 1.2.99.7 GO:0005506 ... Q46509 15250689
    46471 1sij:A (2.3) BS05 FES 1.2.99.7 GO:0005506 ... Q46509 15250689
    46472 1sio:A (1.8) BS01 peptide ? GO:0004252 ... Q8GB88 15014068
    46473 1sio:A (1.8) BS02 CA ? GO:0004252 ... Q8GB88 15014068
    46474 1sio:B (1.8) BS01 peptide ? GO:0004252 ... Q8GB88 15014068
    46475 1sio:B (1.8) BS02 CA ? GO:0004252 ... Q8GB88 15014068
    46476 1sio:C (1.8) BS01 peptide ? GO:0004252 ... Q8GB88 15014068
    46477 1sio:C (1.8) BS02 CA ? GO:0004252 ... Q8GB88 15014068
    46478 1siq:A (2.1) BS01 FAD 1.3.8.6 GO:0003995 ... Q92947 15274622
    46479 1sir:A (2.6) BS01 FAD 1.3.8.6 GO:0000062 ... Q92947 15274622
    46480 1sir:A (2.6) BS02 NBC 1.3.8.6 GO:0000062 ... Q92947 15274622
    46481 1siu:A (2.31) BS01 CA ? GO:0004252 ... Q8GB88 15014068
    46482 1siv:A (2.5) BS01 PSI 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P05896 8241159 PDBbind: -logKd/Ki=8.08, Ki=8.4nM
    46483 1siv:B (2.5) BS01 PSI 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P05896 8241159 MOAD: Ki=8.4nM
    PDBbind: -logKd/Ki=8.08, Ki=8.4nM
    46484 1siw:A (2.2) BS01 GDP 1.7.5.1 GO:0005515 ... P09152 15122898
    46485 1siw:A (2.2) BS02 SF4 1.7.5.1 GO:0005515 ... P09152 15122898
    46486 1siw:B (2.2) BS01 SF4 1.7.5.1 GO:0005515 ... P11349 15122898
    46487 1siw:B (2.2) BS02 SF4 1.7.5.1 GO:0005515 ... P11349 15122898
    46488 1siw:B (2.2) BS03 SF4 1.7.5.1 GO:0005515 ... P11349 15122898
    46489 1siw:B (2.2) BS04 F3S 1.7.5.1 GO:0005515 ... P11349 15122898
    46490 1siw:B (2.2) BS05 HEM 1.7.5.1 GO:0005515 ... P11349 15122898
    46491 1siw:C (2.2) BS01 HEM 1.7.5.1 GO:0005886 ... P11350 15122898
    46492 1siw:C (2.2) BS02 HEM 1.7.5.1 GO:0005886 ... P11350 15122898
    46493 1six:A (1.3) BS01 DUP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    46494 1siz:A (2.25) BS01 F3S ? GO:0005506 ... P29603 15122884
    46495 1siz:C (2.25) BS01 F3S ? GO:0005506 ... P29603 15122884
    46496 1sj1:A (1.5) BS01 F3S ? GO:0005506 ... P29603 15122884
    46497 1sj1:B (1.5) BS01 F3S ? GO:0005506 ... P29603 15122884
    46498 1sj2:A (2.41) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 15231843
    46499 1sj2:B (2.41) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 15231843
    46500 1sj3:P (2.2) BS01 rna ? GO:0003676 ... P09012 15141216
    46501 1sj4:P (2.7) BS01 rna ? GO:0003676 ... P09012 15141216
    46502 1sj9:B (2.5) BS01 PO4 2.4.2.3 GO:0003824 ... P0A1F6 16511035
    46503 1sja:A (2.3) BS01 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46504 1sja:A (2.3) BS02 AME 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46505 1sja:B (2.3) BS01 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46506 1sja:B (2.3) BS02 AME 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46507 1sja:C (2.3) BS01 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46508 1sja:C (2.3) BS02 AME 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46509 1sja:D (2.3) BS01 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46510 1sja:D (2.3) BS02 AME 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46511 1sjb:A (2.2) BS01 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46512 1sjb:A (2.2) BS02 OSB 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46513 1sjb:B (2.2) BS01 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46514 1sjb:B (2.2) BS02 OSB 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46515 1sjb:C (2.2) BS01 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46516 1sjb:C (2.2) BS02 OSB 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46517 1sjb:D (2.2) BS01 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46518 1sjb:D (2.2) BS02 OSB 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46519 1sjc:A (2.1) BS01 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46520 1sjc:A (2.1) BS02 SMG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46521 1sjc:B (2.1) BS01 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46522 1sjc:B (2.1) BS02 SMG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46523 1sjc:C (2.1) BS01 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46524 1sjc:C (2.1) BS02 SMG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46525 1sjc:D (2.1) BS01 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46526 1sjc:D (2.1) BS02 SMG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46527 1sjd:A (1.87) BS01 NPG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46528 1sjd:A (1.87) BS02 NPG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46529 1sjd:B (1.87) BS01 NPG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46530 1sjd:B (1.87) BS02 NPG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46531 1sjd:C (1.87) BS01 NPG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46532 1sjd:C (1.87) BS02 NPG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46533 1sjd:D (1.87) BS01 NPG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46534 1sjd:D (1.87) BS02 NPG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 15134446
    46535 1sje:A (2.45) BS01 peptide ? GO:0006955 ... P01903 15331779
    46536 1sje:B (2.45) BS01 peptide ? GO:0006955 ... P01911 15331779
    46537 1sjf:A (2.75) BS01 rna ? GO:0003676 ... P09012 15141216
    46538 1sjg:A (-1.00) BS01 FES ? GO:0009056 ... Q00458 15452777
    46539 1sjh:A (2.25) BS01 peptide ? GO:0006955 ... P01903 15331779
    46540 1sjh:B (2.25) BS01 peptide ? GO:0006955 ... P01911 15331779
    46541 1sjm:A (1.4) BS01 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    46542 1sjm:A (1.4) BS02 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    46543 1sjm:A (1.4) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 15131305
    46544 1sjm:A (1.4) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 15131305
    46545 1sjm:B (1.4) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 15131305
    46546 1sjm:B (1.4) BS02 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    46547 1sjm:B (1.4) BS03 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    46548 1sjm:B (1.4) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 15131305
    46549 1sjm:C (1.4) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 15131305
    46550 1sjm:C (1.4) BS02 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    46551 1sjm:C (1.4) BS03 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    46552 1sjm:C (1.4) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 15131305
    46553 1sjn:A (1.8) BS01 DUP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    46554 1sjn:A (1.8) BS02 DUP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    46555 1sjn:B (1.8) BS01 DUP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    46556 1sjn:B (1.8) BS02 DUP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    46557 1sjn:C (1.8) BS01 DUP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    46558 1sjn:C (1.8) BS02 DUP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    46559 1sjn:C (1.8) BS03 DUP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    46560 1sjw:A (1.35) BS01 NGV 5.5.1.26 GO:0016853 ... Q9RN59 15071504
    46561 1sjz:A (1.8) BS01 TAS 1.20.4.1 GO:0008794 ... P08692 15295115
    46562 1sk0:A (1.8) BS01 TAS 1.20.4.1 GO:0008794 ... P08692 15295115
    46563 1sk4:A (1.65) BS01 NA ? GO:0008270 ... Q96LB9 15140887
    46564 1sk6:A (3.2) BS01 YB 4.6.1.1 GO:0005576 ... P40136 15131111
    46565 1sk6:A (3.2) BS02 YB 4.6.1.1 GO:0005576 ... P40136 15131111
    46566 1sk6:A (3.2) BS03 YB 4.6.1.1 GO:0005576 ... P40136 15131111
    46567 1sk6:A (3.2) BS04 CMP 4.6.1.1 GO:0005576 ... P40136 15131111
    46568 1sk6:A (3.2) BS05 POP 4.6.1.1 GO:0005576 ... P40136 15131111
    46569 1sk6:B (3.2) BS01 YB 4.6.1.1 GO:0005576 ... P40136 15131111
    46570 1sk6:B (3.2) BS02 YB 4.6.1.1 GO:0005576 ... P40136 15131111
    46571 1sk6:B (3.2) BS03 CMP 4.6.1.1 GO:0005576 ... P40136 15131111
    46572 1sk6:B (3.2) BS04 POP 4.6.1.1 GO:0005576 ... P40136 15131111
    46573 1sk6:C (3.2) BS01 YB 4.6.1.1 GO:0005576 ... P40136 15131111
    46574 1sk6:C (3.2) BS02 YB 4.6.1.1 GO:0005576 ... P40136 15131111
    46575 1sk6:C (3.2) BS03 YB 4.6.1.1 GO:0005576 ... P40136 15131111
    46576 1sk6:C (3.2) BS04 CMP 4.6.1.1 GO:0005576 ... P40136 15131111
    46577 1sk6:C (3.2) BS05 POP 4.6.1.1 GO:0005576 ... P40136 15131111
    46578 1sk6:D (3.2) BS01 CA ? GO:0000086 ... P0DP23 15131111
    46579 1sk6:D (3.2) BS02 CA ? GO:0000086 ... P0DP23 15131111
    46580 1sk6:E (3.2) BS01 CA ? GO:0000086 ... P0DP23 15131111
    46581 1sk6:E (3.2) BS02 CA ? GO:0000086 ... P0DP23 15131111
    46582 1sk6:F (3.2) BS01 CA ? GO:0000086 ... P0DP23 15131111
    46583 1sk6:F (3.2) BS02 CA ? GO:0000086 ... P0DP23 15131111
    46584 1sk7:A (1.6) BS01 HEM 1.14.99.3 GO:0004392 ... O69002 15122889
    46585 1sk8:A (1.65) BS01 PO4 3.1.3.-
    3.1.3.8    		 GO:0003993 ... O00092 15341723
    46586 1sk8:A (1.65) BS02 PO4 3.1.3.-
    3.1.3.8    		 GO:0003993 ... O00092 15341723
    46587 1sk9:A (1.64) BS01 PO4 3.1.3.-
    3.1.3.8    		 GO:0003993 ... O00092 15341723
    46588 1skg:A (1.21) BS01 peptide 3.1.1.4 GO:0004623 ... P59071 N/A
    46589 1skm:A (2.2) BS01 dna 2.1.1.37 GO:0003677 ... P05102 15273274
    46590 1skm:A (2.2) BS02 dna 2.1.1.37 GO:0003677 ... P05102 15273274
    46591 1skm:A (2.2) BS03 SAH 2.1.1.37 GO:0003677 ... P05102 15273274
    46592 1skn:P (2.5) BS01 dna ? GO:0000978 ... P34707 9628487
    46593 1skn:P (2.5) BS02 dna ? GO:0000978 ... P34707 9628487
    46594 1skq:A (1.8) BS01 GDP ? GO:0003746 ... P35021 15157096
    46595 1skq:B (1.8) BS01 GDP ? GO:0003746 ... P35021 15157096
    46596 1skr:A (2.4) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    46597 1skr:A (2.4) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    46598 1skr:A (2.4) BS03 MG 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    46599 1skr:A (2.4) BS04 MG 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    46600 1skr:A (2.4) BS05 DAD 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15235589
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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