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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    45401 1s3f:C (2.2) BS01 SNI 2.4.2.6 GO:0016757 ... Q8RLY5 14992575
    45402 1s3g:A (2.25) BS01 ZN 2.7.4.3 GO:0004017 ... P84139 15100224
    45403 1s3g:A (2.25) BS02 AP5 2.7.4.3 GO:0004017 ... P84139 15100224
    45404 1s3h:A (2.5) BS01 CO 2.1.3.1 GO:0003824 ... Q70AC7 15329673
    45405 1s3i:A (2.3) BS01 BME 1.5.1.6 GO:0003824 ... P28037 14729668
    45406 1s3i:A (2.3) BS02 BME 1.5.1.6 GO:0003824 ... P28037 14729668
    45407 1s3n:A (2.5) BS01 MN 3.1.4.- GO:0016787 ... Q58346 15128743
    45408 1s3n:A (2.5) BS02 MN 3.1.4.- GO:0016787 ... Q58346 15128743
    45409 1s3n:B (2.5) BS01 MN 3.1.4.- GO:0016787 ... Q58346 15128743
    45410 1s3n:B (2.5) BS02 MN 3.1.4.- GO:0016787 ... Q58346 15128743
    45411 1s3p:A (2.0) BS01 CA ? GO:0005509 ... P02625 15287728
    45412 1s3p:A (2.0) BS02 CA ? GO:0005509 ... P02625 15287728
    45413 1s3q:A (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    45414 1s3q:A (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    45415 1s3q:B (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    45416 1s3q:B (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    45417 1s3q:C (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    45418 1s3q:C (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    45419 1s3q:D (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    45420 1s3q:D (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    45421 1s3q:E (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    45422 1s3q:E (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    45423 1s3q:F (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    45424 1s3q:F (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    45425 1s3q:G (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    45426 1s3q:G (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    45427 1s3q:H (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    45428 1s3q:H (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    45429 1s3q:I (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    45430 1s3q:I (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    45431 1s3q:J (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    45432 1s3q:J (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    45433 1s3q:K (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    45434 1s3q:K (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    45435 1s3q:L (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    45436 1s3q:L (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    45437 1s3s:A (2.9) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 14988733
    45438 1s3s:B (2.9) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 14988733
    45439 1s3s:C (2.9) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 14988733
    45440 1s3s:D (2.9) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 14988733
    45441 1s3s:E (2.9) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 14988733
    45442 1s3s:F (2.9) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 14988733
    45443 1s3t:C (2.1) BS01 BO3 3.5.1.5 GO:0005737 ... P41020 15038715
    45444 1s3u:A (2.5) BS01 TQD 1.5.1.3 GO:0000900 ... P00374 15039552
    45445 1s3v:A (1.8) BS01 TQD 1.5.1.3 GO:0000900 ... P00374 15039552
    45446 1s3w:A (1.9) BS01 NAP 1.5.1.3 GO:0000900 ... P00374 15039552
    45447 1s3w:A (1.9) BS02 TQT 1.5.1.3 GO:0000900 ... P00374 15039552
    45448 1s3x:A (1.84) BS01 PO4 ? GO:0005524 ... P0DMV8 9083109
    45449 1s3x:A (1.84) BS02 CA ? GO:0005524 ... P0DMV8 9083109
    45450 1s3x:A (1.84) BS03 ADP ? GO:0005524 ... P0DMV8 9083109
    45451 1s3y:A (2.25) BS01 NAP 1.5.1.3 GO:0004146 ... P16184 15039552
    45452 1s3y:A (2.25) BS02 TQT 1.5.1.3 GO:0004146 ... P16184 15039552 MOAD: ic50=210nM
    45453 1s3z:A (2.0) BS01 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    45454 1s3z:A (2.0) BS02 RIO 2.3.1.82 GO:0006084 ... Q9R381 15123251
    45455 1s3z:A (2.0) BS03 RIO 2.3.1.82 GO:0006084 ... Q9R381 15123251
    45456 1s3z:B (2.0) BS01 RIO 2.3.1.82 GO:0006084 ... Q9R381 15123251
    45457 1s3z:B (2.0) BS02 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    45458 1s3z:B (2.0) BS03 RIO 2.3.1.82 GO:0006084 ... Q9R381 15123251
    45459 1s40:A (-1.00) BS01 dna ? GO:0000723 ... P32797 15066429 PDBbind: Kd=0.3nM
    45460 1s46:A (2.2) BS01 BGC 2.4.1.4 GO:0005576 ... Q9ZEU2 15023061
    45461 1s49:A (3.0) BS01 GTP 2.7.7.48
    3.4.21.113
    3.4.22.-
    3.6.1.15
    3.6.4.13
    4.6.1.19
    GO:0003723 ... P19711 15070734
    45462 1s4b:P (2.0) BS01 ZN 3.4.24.15 GO:0000209 ... P52888 14998993
    45463 1s4c:A (2.2) BS01 CU ? GO:0005737 ... P44583 16077096
    45464 1s4c:B (2.2) BS01 CU ? GO:0005737 ... P44583 16077096
    45465 1s4c:C (2.2) BS01 CU ? GO:0005737 ... P44583 16077096
    45466 1s4c:D (2.2) BS01 CU ? GO:0005737 ... P44583 16077096
    45467 1s4d:A (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295 PDBbind: -logKd/Ki=6.49, Ki=0.32uM
    45468 1s4d:B (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295 PDBbind: -logKd/Ki=6.49, Ki=0.32uM
    45469 1s4d:D (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    45470 1s4d:E (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    45471 1s4d:F (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    45472 1s4d:G (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    45473 1s4d:H (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    45474 1s4d:I (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    45475 1s4d:J (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    45476 1s4d:K (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    45477 1s4d:L (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    45478 1s4d:M (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    45479 1s4e:A (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    45480 1s4e:A (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    45481 1s4e:B (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    45482 1s4e:B (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    45483 1s4e:C (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    45484 1s4e:C (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    45485 1s4e:D (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    45486 1s4e:D (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    45487 1s4e:E (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    45488 1s4e:E (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    45489 1s4e:F (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    45490 1s4e:F (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    45491 1s4e:G (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    45492 1s4e:G (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    45493 1s4e:H (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    45494 1s4e:H (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    45495 1s4e:I (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    45496 1s4e:I (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    45497 1s4i:A (1.8) BS01 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    45498 1s4i:A (1.8) BS02 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    45499 1s4i:B (1.8) BS01 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    45500 1s4i:B (1.8) BS02 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    45501 1s4i:C (1.8) BS01 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    45502 1s4i:C (1.8) BS02 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    45503 1s4i:D (1.8) BS01 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    45504 1s4i:D (1.8) BS02 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    45505 1s4m:A (2.1) BS01 LUM 2.7.1.26
    2.7.7.2
    GO:0003919 ... Q9WZW1 15468322
    45506 1s4m:B (2.1) BS01 LUM 2.7.1.26
    2.7.7.2
    GO:0003919 ... Q9WZW1 15468322
    45507 1s4o:A (2.01) BS01 MN 2.4.1.- GO:0000030 ... P27809 14752117
    45508 1s4o:A (2.01) BS02 GDP 2.4.1.- GO:0000030 ... P27809 14752117
    45509 1s4o:B (2.01) BS01 MN 2.4.1.- GO:0000030 ... P27809 14752117
    45510 1s4o:B (2.01) BS02 GDP 2.4.1.- GO:0000030 ... P27809 14752117
    45511 1s4p:A (2.01) BS01 MMA 2.4.1.- GO:0000030 ... P27809 14752117
    45512 1s4p:A (2.01) BS02 MN 2.4.1.- GO:0000030 ... P27809 14752117
    45513 1s4p:A (2.01) BS03 GDP 2.4.1.- GO:0000030 ... P27809 14752117
    45514 1s4p:B (2.01) BS01 MMA 2.4.1.- GO:0000030 ... P27809 14752117
    45515 1s4p:B (2.01) BS02 MN 2.4.1.- GO:0000030 ... P27809 14752117
    45516 1s4p:B (2.01) BS03 GDP 2.4.1.- GO:0000030 ... P27809 14752117
    45517 1s4v:A (2.0) BS01 peptide 3.4.22.- GO:0006508 ... O65039 15037072
    45518 1s4v:A (2.0) BS02 peptide 3.4.22.- GO:0006508 ... O65039 15037072
    45519 1s4v:B (2.0) BS01 peptide 3.4.22.- GO:0006508 ... O65039 15037072
    45520 1s50:A (1.65) BS01 GLU ? GO:0015276 ... P42260 15721240 MOAD: Ki=1.4uM
    PDBbind: -logKd/Ki=7.20, Ki=0.063uM
    45521 1s51:A (2.0) BS01 RET ? GO:0005216 ... P02945 14982414
    45522 1s51:B (2.0) BS01 RET ? GO:0005216 ... P02945 14982414
    45523 1s52:A (2.3) BS01 RET ? GO:0005216 ... P02945 14982414
    45524 1s52:B (2.3) BS01 RET ? GO:0005216 ... P02945 14982414
    45525 1s53:A (2.0) BS01 RET ? GO:0005216 ... P02945 14982414
    45526 1s53:B (2.0) BS01 RET ? GO:0005216 ... P02945 14982414
    45527 1s54:A (2.2) BS01 RET ? GO:0005216 ... P02945 14982414
    45528 1s54:B (2.2) BS01 RET ? GO:0005216 ... P02945 14982414
    45529 1s56:A (2.43) BS01 HEC ? GO:0005344 ... P9WN25 15016811
    45530 1s56:A (2.43) BS02 XE ? GO:0005344 ... P9WN25 15016811
    45531 1s56:A (2.43) BS03 XE ? GO:0005344 ... P9WN25 15016811
    45532 1s56:A (2.43) BS04 XE ? GO:0005344 ... P9WN25 15016811
    45533 1s56:B (2.43) BS01 HEM ? GO:0005344 ... P9WN25 15016811
    45534 1s56:B (2.43) BS02 XE ? GO:0005344 ... P9WN25 15016811
    45535 1s56:B (2.43) BS03 XE ? GO:0005344 ... P9WN25 15016811
    45536 1s59:A (2.6) BS01 DGI 2.7.4.6 GO:0004550 ... O64903 15465053
    45537 1s59:C (2.6) BS01 DGT 2.7.4.6 GO:0004550 ... O64903 15465053
    45538 1s5d:D (1.75) BS01 GAL ? GO:0005515 ... P01556 15049684
    45539 1s5d:E (1.75) BS01 GAL ? GO:0005515 ... P01556 15049684
    45540 1s5d:F (1.75) BS01 GAL ? GO:0005515 ... P01556 15049684
    45541 1s5d:G (1.75) BS01 GAL ? GO:0005515 ... P01556 15049684
    45542 1s5d:H (1.75) BS01 GAL ? GO:0005515 ... P01556 15049684
    45543 1s5e:D (1.9) BS01 GAL ? GO:0005515 ... P01556 15049684
    45544 1s5e:J (1.9) BS01 GAL ? GO:0005515 ... P01556 15049684
    45545 1s5f:D (2.6) BS01 GAL ? GO:0005515 ... P01556 15049684
    45546 1s5f:E (2.6) BS01 GAL ? GO:0005515 ... P01556 15049684
    45547 1s5f:F (2.6) BS01 GAL ? GO:0005515 ... P01556 15049684
    45548 1s5f:G (2.6) BS01 GAL ? GO:0005515 ... P01556 15049684
    45549 1s5f:H (2.6) BS01 GAL ? GO:0005515 ... P01556 15049684
    45550 1s5g:A (3.1) BS01 ADP ? GO:0003774 ... P24733 15184651
    45551 1s5g:Y (3.1) BS01 MG ? GO:0005509 ... P13543 15184651
    45552 1s5g:Z (3.1) BS01 CA ? GO:0005509 ... P07291 15184651
    45553 1s5j:A (2.4) BS01 MG 2.7.7.7 GO:0000166 ... P26811 15530364
    45554 1s5k:A (2.4) BS01 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    45555 1s5k:B (2.4) BS01 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    45556 1s5l:A (3.5) BS01 FE 1.10.3.9 GO:0005506 ... P0A444 14764885
    45557 1s5l:A (3.5) BS02 BCT 1.10.3.9 GO:0005506 ... P0A444 14764885
    45558 1s5l:A (3.5) BS03 OEC 1.10.3.9 GO:0005506 ... P0A444 14764885
    45559 1s5l:A (3.5) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    45560 1s5l:A (3.5) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    45561 1s5l:A (3.5) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    45562 1s5l:A (3.5) BS07 PHO 1.10.3.9 GO:0005506 ... P0A444 14764885
    45563 1s5l:A (3.5) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    45564 1s5l:A (3.5) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    45565 1s5l:A (3.5) BS10 BCT 1.10.3.9 GO:0005506 ... P0A444 14764885
    45566 1s5l:A (3.5) BS11 PHO 1.10.3.9 GO:0005506 ... P0A444 14764885
    45567 1s5l:B (3.5) BS01 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45568 1s5l:B (3.5) BS02 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45569 1s5l:B (3.5) BS03 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45570 1s5l:B (3.5) BS04 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45571 1s5l:B (3.5) BS05 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45572 1s5l:B (3.5) BS06 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45573 1s5l:B (3.5) BS07 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45574 1s5l:B (3.5) BS08 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45575 1s5l:B (3.5) BS09 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45576 1s5l:B (3.5) BS10 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45577 1s5l:B (3.5) BS11 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45578 1s5l:B (3.5) BS12 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45579 1s5l:B (3.5) BS13 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45580 1s5l:B (3.5) BS14 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45581 1s5l:B (3.5) BS15 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45582 1s5l:B (3.5) BS16 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45583 1s5l:C (3.5) BS01 CLA ? GO:0005737 ... Q8DIF8 14764885
    45584 1s5l:C (3.5) BS02 CLA ? GO:0005737 ... Q8DIF8 14764885
    45585 1s5l:C (3.5) BS03 CLA ? GO:0005737 ... Q8DIF8 14764885
    45586 1s5l:C (3.5) BS04 CLA ? GO:0005737 ... Q8DIF8 14764885
    45587 1s5l:C (3.5) BS05 CLA ? GO:0005737 ... Q8DIF8 14764885
    45588 1s5l:C (3.5) BS06 CLA ? GO:0005737 ... Q8DIF8 14764885
    45589 1s5l:C (3.5) BS07 CLA ? GO:0005737 ... Q8DIF8 14764885
    45590 1s5l:C (3.5) BS08 CLA ? GO:0005737 ... Q8DIF8 14764885
    45591 1s5l:C (3.5) BS09 CLA ? GO:0005737 ... Q8DIF8 14764885
    45592 1s5l:C (3.5) BS10 CLA ? GO:0005737 ... Q8DIF8 14764885
    45593 1s5l:C (3.5) BS11 CLA ? GO:0005737 ... Q8DIF8 14764885
    45594 1s5l:C (3.5) BS12 CLA ? GO:0005737 ... Q8DIF8 14764885
    45595 1s5l:C (3.5) BS13 CLA ? GO:0005737 ... Q8DIF8 14764885
    45596 1s5l:C (3.5) BS14 CLA ? GO:0005737 ... Q8DIF8 14764885
    45597 1s5l:D (3.5) BS01 FE 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    45598 1s5l:D (3.5) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    45599 1s5l:D (3.5) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    45600 1s5l:D (3.5) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 14764885

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218