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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    44601 1rwt:C (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    44602 1rwt:C (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    44603 1rwt:C (2.72) BS15 CHL ? GO:0009765 ... P12333 15029188
    44604 1rwt:C (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    44605 1rwt:D (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    44606 1rwt:D (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    44607 1rwt:D (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    44608 1rwt:D (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    44609 1rwt:D (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    44610 1rwt:D (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    44611 1rwt:D (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    44612 1rwt:D (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    44613 1rwt:D (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    44614 1rwt:D (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    44615 1rwt:D (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    44616 1rwt:D (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    44617 1rwt:D (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    44618 1rwt:D (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    44619 1rwt:D (2.72) BS15 CHL ? GO:0009765 ... P12333 15029188
    44620 1rwt:D (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    44621 1rwt:E (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    44622 1rwt:E (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    44623 1rwt:E (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    44624 1rwt:E (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    44625 1rwt:E (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    44626 1rwt:E (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    44627 1rwt:E (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    44628 1rwt:E (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    44629 1rwt:E (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    44630 1rwt:E (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    44631 1rwt:E (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    44632 1rwt:E (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    44633 1rwt:E (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    44634 1rwt:E (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    44635 1rwt:E (2.72) BS15 CHL ? GO:0009765 ... P12333 15029188
    44636 1rwt:E (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    44637 1rwt:F (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    44638 1rwt:F (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    44639 1rwt:F (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    44640 1rwt:F (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    44641 1rwt:F (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    44642 1rwt:F (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    44643 1rwt:F (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    44644 1rwt:F (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    44645 1rwt:F (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    44646 1rwt:F (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    44647 1rwt:F (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    44648 1rwt:F (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    44649 1rwt:F (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    44650 1rwt:F (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    44651 1rwt:F (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    44652 1rwt:F (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    44653 1rwt:G (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    44654 1rwt:G (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    44655 1rwt:G (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    44656 1rwt:G (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    44657 1rwt:G (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    44658 1rwt:G (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    44659 1rwt:G (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    44660 1rwt:G (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    44661 1rwt:G (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    44662 1rwt:G (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    44663 1rwt:G (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    44664 1rwt:G (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    44665 1rwt:G (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    44666 1rwt:G (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    44667 1rwt:G (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    44668 1rwt:G (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    44669 1rwt:H (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    44670 1rwt:H (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    44671 1rwt:H (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    44672 1rwt:H (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    44673 1rwt:H (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    44674 1rwt:H (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    44675 1rwt:H (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    44676 1rwt:H (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    44677 1rwt:H (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    44678 1rwt:H (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    44679 1rwt:H (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    44680 1rwt:H (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    44681 1rwt:H (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    44682 1rwt:H (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    44683 1rwt:H (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    44684 1rwt:H (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    44685 1rwt:I (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    44686 1rwt:I (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    44687 1rwt:I (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    44688 1rwt:I (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    44689 1rwt:I (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    44690 1rwt:I (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    44691 1rwt:I (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    44692 1rwt:I (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    44693 1rwt:I (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    44694 1rwt:I (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    44695 1rwt:I (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    44696 1rwt:I (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    44697 1rwt:I (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    44698 1rwt:I (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    44699 1rwt:I (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    44700 1rwt:I (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    44701 1rwt:J (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    44702 1rwt:J (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    44703 1rwt:J (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    44704 1rwt:J (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    44705 1rwt:J (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    44706 1rwt:J (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    44707 1rwt:J (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    44708 1rwt:J (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    44709 1rwt:J (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    44710 1rwt:J (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    44711 1rwt:J (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    44712 1rwt:J (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    44713 1rwt:J (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    44714 1rwt:J (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    44715 1rwt:J (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    44716 1rwt:J (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    44717 1rwv:A (2.1) BS01 5PH 3.4.22.36 GO:0004197 ... P29466 N/A
    44718 1rwv:B (2.1) BS01 5PH 3.4.22.36 GO:0004197 ... P29466 N/A
    44719 1rww:A (2.8) BS01 OQB 3.4.22.36 GO:0004197 ... P29466 16274992 PDBbind: -logKd/Ki=8.30, Ki=5nM
    BindingDB: IC50=5nM, Ki=5nM
    44720 1rww:B (2.8) BS01 OQB 3.4.22.36 GO:0004197 ... P29466 16274992 PDBbind: -logKd/Ki=8.30, Ki=5nM
    BindingDB: IC50=5nM, Ki=5nM
    44721 1rwx:A (1.85) BS01 YBH 3.4.22.36 GO:0004197 ... P29466 16274992 PDBbind: -logKd/Ki=7.37, Ki=43nM
    44722 1rwx:B (1.85) BS01 YBH 3.4.22.36 GO:0004197 ... P29466 16274992 PDBbind: -logKd/Ki=7.37, Ki=43nM
    44723 1rwy:A (1.05) BS01 CA ? GO:0005509 ... P02625 15169955
    44724 1rwy:A (1.05) BS02 CA ? GO:0005509 ... P02625 15169955
    44725 1rwy:B (1.05) BS01 CA ? GO:0005509 ... P02625 15169955
    44726 1rwy:B (1.05) BS02 CA ? GO:0005509 ... P02625 15169955
    44727 1rwy:C (1.05) BS01 CA ? GO:0005509 ... P02625 15169955
    44728 1rwy:C (1.05) BS02 CA ? GO:0005509 ... P02625 15169955
    44729 1rx0:A (1.77) BS01 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    44730 1rx0:A (1.77) BS02 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    44731 1rx0:B (1.77) BS01 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    44732 1rx0:B (1.77) BS02 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    44733 1rx0:C (1.77) BS01 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    44734 1rx0:C (1.77) BS02 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    44735 1rx0:C (1.77) BS03 2MC 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    44736 1rx0:D (1.77) BS01 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    44737 1rx0:D (1.77) BS02 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    44738 1rx0:D (1.77) BS03 2MC 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    44739 1rx1:A (2.0) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 MOAD: Kd=24uM
    44740 1rx2:A (1.8) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    44741 1rx3:A (2.2) BS01 MTX 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 BindingDB: IC50=8.8nM, EC50=1nM
    44742 1rx3:A (2.2) BS02 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    44743 1rx4:A (2.2) BS01 DDF 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    44744 1rx4:A (2.2) BS02 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    44745 1rx5:A (2.3) BS01 DDF 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    44746 1rx6:A (2.0) BS01 DDF 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    44747 1rx6:A (2.0) BS02 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    44748 1rx8:A (2.8) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    44749 1rx9:A (1.9) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 MOAD: Kd=24uM
    44750 1rxc:A (2.35) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    44751 1rxc:A (2.35) BS02 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    44752 1rxc:B (2.35) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    44753 1rxc:B (2.35) BS02 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    44754 1rxc:B (2.35) BS03 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    44755 1rxc:C (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    44756 1rxc:C (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    44757 1rxc:C (2.35) BS03 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    44758 1rxc:C (2.35) BS04 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    44759 1rxc:D (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    44760 1rxc:D (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    44761 1rxc:D (2.35) BS03 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    44762 1rxc:D (2.35) BS04 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    44763 1rxc:E (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    44764 1rxc:E (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    44765 1rxc:E (2.35) BS03 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    44766 1rxc:E (2.35) BS04 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    44767 1rxc:F (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    44768 1rxc:F (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    44769 1rxc:F (2.35) BS03 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    44770 1rxc:F (2.35) BS04 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    44771 1rxc:I (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    44772 1rxc:I (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    44773 1rxc:I (2.35) BS03 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    44774 1rxc:J (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    44775 1rxc:J (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    44776 1rxc:J (2.35) BS03 PO4 2.4.2.3 GO:0003824 ... P12758 15003451
    44777 1rxc:J (2.35) BS04 5UD 2.4.2.3 GO:0003824 ... P12758 15003451
    44778 1rxc:K (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    44779 1rxc:K (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    44780 1rxc:K (2.35) BS03 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    44781 1rxc:K (2.35) BS04 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    44782 1rxc:L (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    44783 1rxc:L (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    44784 1rxc:L (2.35) BS03 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    44785 1rxc:L (2.35) BS04 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    44786 1rxe:A (1.7) BS01 MNB 1.20.4.4 GO:0004725 ... P0A006 15159594
    44787 1rxf:A (1.5) BS01 FE 1.14.20.1 GO:0005506 ... P18548 9723623
    44788 1rxg:A (1.5) BS01 FE 1.14.20.1 GO:0005506 ... P18548 9723623
    44789 1rxg:A (1.5) BS02 AKG 1.14.20.1 GO:0005506 ... P18548 9723623
    44790 1rxh:A (2.9) BS01 BNI ? GO:0009374 ... P22629 15079055
    44791 1rxh:B (2.9) BS01 BNI ? GO:0009374 ... P22629 15079055
    44792 1rxj:A (1.14) BS01 BNI ? GO:0009374 ... P22629 15079055
    44793 1rxj:B (1.14) BS01 BNI ? GO:0009374 ... P22629 15079055
    44794 1rxj:B (1.14) BS02 BNI ? GO:0009374 ... P22629 15079055
    44795 1rxj:C (1.14) BS01 BNI ? GO:0009374 ... P22629 15079055
    44796 1rxj:C (1.14) BS02 BNI ? GO:0009374 ... P22629 15079055
    44797 1rxj:D (1.14) BS01 BNI ? GO:0009374 ... P22629 15079055
    44798 1rxk:A (1.7) BS01 BNI ? GO:0009374 ... P22629 15079055
    44799 1rxk:B (1.7) BS01 BNI ? GO:0009374 ... P22629 15079055
    44800 1rxm:A (2.8) BS01 peptide ? GO:0003677 ... O29912 14718165

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218