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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    43601 1rir:C (2.9) BS01 CA ? GO:0030246 ... P02872 15823017
    43602 1rir:C (2.9) BS02 MN ? GO:0030246 ... P02872 15823017
    43603 1rir:C (2.9) BS03 SFP ? GO:0030246 ... P02872 15823017
    43604 1rir:D (2.9) BS01 CA ? GO:0030246 ... P02872 15823017
    43605 1rir:D (2.9) BS02 MN ? GO:0030246 ... P02872 15823017
    43606 1rir:D (2.9) BS03 SFP ? GO:0030246 ... P02872 15823017
    43607 1rit:A (2.85) BS01 SFP ? GO:0030246 ... P02872 15823017
    43608 1rit:A (2.85) BS02 CA ? GO:0030246 ... P02872 15823017
    43609 1rit:A (2.85) BS03 MN ? GO:0030246 ... P02872 15823017
    43610 1rit:A (2.85) BS04 SFP ? GO:0030246 ... P02872 15823017
    43611 1rit:B (2.85) BS01 SFP ? GO:0030246 ... P02872 15823017
    43612 1rit:B (2.85) BS02 SFP ? GO:0030246 ... P02872 15823017
    43613 1rit:B (2.85) BS03 CA ? GO:0030246 ... P02872 15823017
    43614 1rit:B (2.85) BS04 MN ? GO:0030246 ... P02872 15823017
    43615 1rit:C (2.85) BS01 GAL ? GO:0030246 ... P02872 15823017
    43616 1rit:C (2.85) BS02 SFP ? GO:0030246 ... P02872 15823017
    43617 1rit:C (2.85) BS03 SFP ? GO:0030246 ... P02872 15823017
    43618 1rit:C (2.85) BS04 CA ? GO:0030246 ... P02872 15823017
    43619 1rit:C (2.85) BS05 MN ? GO:0030246 ... P02872 15823017
    43620 1rit:D (2.85) BS01 BGC ? GO:0030246 ... P02872 15823017
    43621 1rit:D (2.85) BS02 GAL ? GO:0030246 ... P02872 15823017
    43622 1rit:D (2.85) BS03 SFP ? GO:0030246 ... P02872 15823017
    43623 1rit:D (2.85) BS04 CA ? GO:0030246 ... P02872 15823017
    43624 1rit:D (2.85) BS05 MN ? GO:0030246 ... P02872 15823017
    43625 1riw:B (2.04) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 15137772
    43626 1riw:B (2.04) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 15137772
    43627 1riw:B (2.04) BS03 OSC 3.4.21.5 GO:0004252 ... P00734 15137772 PDBbind: -logKd/Ki=7.55, IC50=28nM
    BindingDB: IC50=28nM
    43628 1riw:C (2.04) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 15137772
    43629 1riw:C (2.04) BS02 OSC 3.4.21.5 GO:0004252 ... P00734 15137772 MOAD: ic50=28nM
    PDBbind: -logKd/Ki=7.55, IC50=28nM
    BindingDB: IC50=28nM
    43630 1rj5:A (2.81) BS01 ZN 4.2.1.1 GO:0004089 ... Q9WVT6 14660577
    43631 1rj5:B (2.81) BS01 ZN 4.2.1.1 GO:0004089 ... Q9WVT6 14660577
    43632 1rj6:A (2.9) BS01 ZN 4.2.1.1 GO:0004089 ... Q9WVT6 14660577
    43633 1rj6:A (2.9) BS02 AZM 4.2.1.1 GO:0004089 ... Q9WVT6 14660577
    43634 1rj6:B (2.9) BS01 ZN 4.2.1.1 GO:0004089 ... Q9WVT6 14660577
    43635 1rj6:B (2.9) BS02 AZM 4.2.1.1 GO:0004089 ... Q9WVT6 14660577
    43636 1rjd:A (1.8) BS01 SAM 2.1.1.233 GO:0005575 ... Q04081 14660564
    43637 1rjd:B (1.8) BS01 SAM 2.1.1.233 GO:0005575 ... Q04081 14660564
    43638 1rjd:C (1.8) BS01 SAM 2.1.1.233 GO:0005575 ... Q04081 14660564
    43639 1rje:A (2.0) BS01 SAH 2.1.1.233 GO:0005575 ... Q04081 14660564
    43640 1rje:B (2.0) BS01 SAH 2.1.1.233 GO:0005575 ... Q04081 14660564
    43641 1rje:C (2.0) BS01 SAH 2.1.1.233 GO:0005575 ... Q04081 14660564
    43642 1rjg:A (2.61) BS01 SAH 2.1.1.233 GO:0005575 ... Q04081 14660564
    43643 1rjk:A (1.99) BS01 peptide ? GO:0003677 ... P13053 15065852
    43644 1rjk:A (1.99) BS02 VDZ ? GO:0003677 ... P13053 15065852 PDBbind: -logKd/Ki=10.00, Ki=0.1nM
    BindingDB: Ki=0.1nM
    43645 1rjl:C (2.6) BS01 peptide ? GO:0009279 ... P17739 15713683
    43646 1rjm:A (2.15) BS01 EP1 4.1.3.36 GO:0005886 ... P9WNP5 16131752
    43647 1rjm:B (2.15) BS01 EP1 4.1.3.36 GO:0005886 ... P9WNP5 16131752
    43648 1rjm:C (2.15) BS01 EP1 4.1.3.36 GO:0005886 ... P9WNP5 16131752
    43649 1rjn:A (2.3) BS01 EP1 4.1.3.36 GO:0005886 ... P9WNP5 16131752
    43650 1rjn:B (2.3) BS01 COA 4.1.3.36 GO:0005886 ... P9WNP5 16131752
    43651 1rjn:B (2.3) BS02 EP1 4.1.3.36 GO:0005886 ... P9WNP5 16131752
    43652 1rjn:C (2.3) BS01 EP1 4.1.3.36 GO:0005886 ... P9WNP5 16131752
    43653 1rjo:A (1.67) BS01 CU 1.4.3.21 GO:0005507 ... P46881 15533431
    43654 1rjo:A (1.67) BS02 XE 1.4.3.21 GO:0005507 ... P46881 15533431
    43655 1rjo:A (1.67) BS03 XE 1.4.3.21 GO:0005507 ... P46881 15533431
    43656 1rjo:A (1.67) BS04 XE 1.4.3.21 GO:0005507 ... P46881 15533431
    43657 1rjo:A (1.67) BS05 XE 1.4.3.21 GO:0005507 ... P46881 15533431
    43658 1rjo:A (1.67) BS06 XE 1.4.3.21 GO:0005507 ... P46881 15533431
    43659 1rjo:A (1.67) BS07 XE 1.4.3.21 GO:0005507 ... P46881 15533431
    43660 1rjp:A (1.8) BS01 ZN 3.5.1.81 GO:0016787 ... Q9AGH8 14736882
    43661 1rjp:A (1.8) BS02 CU 3.5.1.81 GO:0016787 ... Q9AGH8 14736882
    43662 1rjq:A (1.8) BS01 ZN 3.5.1.81 GO:0016787 ... Q9AGH8 14736882
    43663 1rjr:A (2.1) BS01 ZN 3.5.1.81 GO:0016787 ... Q9AGH8 14736882
    43664 1rjr:A (2.1) BS02 ZN 3.5.1.81 GO:0016787 ... Q9AGH8 14736882
    43665 1rju:V (1.44) BS01 CU1 N/A GO:0005507 ... N/A 15613489
    43666 1rju:V (1.44) BS02 CU1 N/A GO:0005507 ... N/A 15613489
    43667 1rju:V (1.44) BS03 CU1 N/A GO:0005507 ... N/A 15613489
    43668 1rju:V (1.44) BS04 CU1 N/A GO:0005507 ... N/A 15613489
    43669 1rju:V (1.44) BS05 CU1 N/A GO:0005507 ... N/A 15613489
    43670 1rju:V (1.44) BS06 CU1 N/A GO:0005507 ... N/A 15613489
    43671 1rju:V (1.44) BS07 CU1 N/A GO:0005507 ... N/A 15613489
    43672 1rju:V (1.44) BS08 CU1 N/A GO:0005507 ... N/A 15613489
    43673 1rjv:A (-1.00) BS01 CA ? GO:0005509 ... P20472 15122922
    43674 1rjv:A (-1.00) BS02 CA ? GO:0005509 ... P20472 15122922
    43675 1rjw:A (2.35) BS01 ZN 1.1.1.1 GO:0004022 ... P42328 15122892
    43676 1rjw:A (2.35) BS02 ZN 1.1.1.1 GO:0004022 ... P42328 15122892
    43677 1rjw:A (2.35) BS03 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    43678 1rjw:B (2.35) BS01 ZN 1.1.1.1 GO:0004022 ... P42328 15122892
    43679 1rjw:B (2.35) BS02 ZN 1.1.1.1 GO:0004022 ... P42328 15122892
    43680 1rjw:B (2.35) BS03 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    43681 1rjw:B (2.35) BS04 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    43682 1rjw:B (2.35) BS05 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    43683 1rjw:B (2.35) BS06 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    43684 1rjw:C (2.35) BS01 ZN 1.1.1.1 GO:0004022 ... P42328 15122892
    43685 1rjw:C (2.35) BS02 ZN 1.1.1.1 GO:0004022 ... P42328 15122892
    43686 1rjw:C (2.35) BS03 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    43687 1rjw:D (2.35) BS01 ZN 1.1.1.1 GO:0004022 ... P42328 15122892
    43688 1rjw:D (2.35) BS02 ZN 1.1.1.1 GO:0004022 ... P42328 15122892
    43689 1rjw:D (2.35) BS03 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    43690 1rjw:D (2.35) BS04 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    43691 1rjw:D (2.35) BS05 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    43692 1rk2:A (2.25) BS01 RIB 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    43693 1rk2:A (2.25) BS02 ALF 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    43694 1rk2:A (2.25) BS03 MG 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    43695 1rk2:A (2.25) BS04 ADP 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    43696 1rk2:B (2.25) BS01 RIB 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    43697 1rk2:B (2.25) BS02 ALF 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    43698 1rk2:B (2.25) BS03 MG 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    43699 1rk2:B (2.25) BS04 ADP 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    43700 1rk2:C (2.25) BS01 RIB 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    43701 1rk2:C (2.25) BS02 ALF 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    43702 1rk2:C (2.25) BS03 MG 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    43703 1rk2:C (2.25) BS04 ADP 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    43704 1rk2:D (2.25) BS01 RIB 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    43705 1rk2:D (2.25) BS02 ALF 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    43706 1rk2:D (2.25) BS03 MG 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    43707 1rk2:D (2.25) BS04 ADP 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    43708 1rk3:A (2.2) BS01 peptide ? GO:0003677 ... P13053 15065852
    43709 1rk3:A (2.2) BS02 VDX ? GO:0003677 ... P13053 15065852 MOAD: Kd=0.37nM
    BindingDB: Ki=0.1nM, EC50=0.2nM
    43710 1rk5:A (1.8) BS01 ZN 3.5.1.81 GO:0016787 ... Q9AGH8 14736882
    43711 1rk5:A (1.8) BS02 CU 3.5.1.81 GO:0016787 ... Q9AGH8 14736882
    43712 1rk6:A (1.43) BS01 ZN 3.5.1.81 GO:0016787 ... Q9AGH8 14736882
    43713 1rk8:A (1.9) BS01 CA ? GO:0000226 ... Q9V535 14968132
    43714 1rk8:A (1.9) BS02 CA ? GO:0000226 ... Q9V535 14968132
    43715 1rk9:A (-1.00) BS01 CA ? GO:0005509 ... P20472 15122922
    43716 1rk9:A (-1.00) BS02 CA ? GO:0005509 ... P20472 15122922
    43717 1rkc:A (2.7) BS01 peptide ? GO:0003779 ... P18206 14702644
    43718 1rkd:A (1.84) BS01 RIB 2.7.1.15 GO:0004747 ... P0A9J6 9519409
    43719 1rkd:A (1.84) BS02 ADP 2.7.1.15 GO:0004747 ... P0A9J6 9519409
    43720 1rkg:A (1.9) BS01 peptide ? GO:0003677 ... P13053 15065852
    43721 1rkg:A (1.9) BS02 VD1 ? GO:0003677 ... P13053 15065852
    43722 1rkh:A (2.28) BS01 peptide ? GO:0003677 ... P13053 15065852
    43723 1rkh:A (2.28) BS02 VD2 ? GO:0003677 ... P13053 15065852
    43724 1rkj:A (-1.00) BS01 rna ? GO:0003676 ... P08199 15033352 PDBbind: Kd=1.1uM
    43725 1rkp:A (2.05) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 14668322
    43726 1rkp:A (2.05) BS02 IBM 3.1.4.35 GO:0004114 ... O76074 14668322 BindingDB: Ki=8500nM, IC50=2100nM
    43727 1rkq:A (1.4) BS01 MG 3.1.3.23 GO:0000287 ... P0A8Y5 N/A
    43728 1rkq:B (1.4) BS01 MG 3.1.3.23 GO:0000287 ... P0A8Y5 N/A
    43729 1rkr:A (2.45) BS01 CU ? GO:0005507 ... P56547 9761902
    43730 1rkr:B (2.45) BS01 CU ? GO:0005507 ... P56547 9761902
    43731 1rkr:C (2.45) BS01 CU ? GO:0005507 ... P56547 9761902
    43732 1rkr:D (2.45) BS01 CU ? GO:0005507 ... P56547 9761902
    43733 1rks:A (2.4) BS01 RIB 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    43734 1rku:A (1.47) BS01 MG 3.1.3.3 GO:0000287 ... Q9I2Y2 14699121
    43735 1rku:B (1.47) BS01 MG 3.1.3.3 GO:0000287 ... Q9I2Y2 14699121
    43736 1rkv:A (1.9) BS01 PO4 3.1.3.3 GO:0000287 ... Q9I2Y2 14699121
    43737 1rkv:A (1.9) BS02 MG 3.1.3.3 GO:0000287 ... Q9I2Y2 14699121
    43738 1rkv:B (1.9) BS01 PO4 3.1.3.3 GO:0000287 ... Q9I2Y2 14699121
    43739 1rkv:B (1.9) BS02 MG 3.1.3.3 GO:0000287 ... Q9I2Y2 14699121
    43740 1rkw:A (2.62) BS01 PNT ? GO:0003677 ... P0A0N4 14726520
    43741 1rkx:A (1.8) BS01 NAD 4.2.1.45 GO:0000166 ... Q57329 15023057
    43742 1rkx:B (1.8) BS01 NAD 4.2.1.45 GO:0000166 ... Q57329 15023057
    43743 1rkx:C (1.8) BS01 NAD 4.2.1.45 GO:0000166 ... Q57329 15023057
    43744 1rkx:D (1.8) BS01 NAD 4.2.1.45 GO:0000166 ... Q57329 15023057
    43745 1rky:A (1.68) BS01 CU 1.4.3.- GO:0005507 ... Q96X16 15533431
    43746 1rky:A (1.68) BS02 CA 1.4.3.- GO:0005507 ... Q96X16 15533431
    43747 1rky:A (1.68) BS03 CA 1.4.3.- GO:0005507 ... Q96X16 15533431
    43748 1rky:A (1.68) BS04 XE 1.4.3.- GO:0005507 ... Q96X16 15533431
    43749 1rky:A (1.68) BS05 XE 1.4.3.- GO:0005507 ... Q96X16 15533431
    43750 1rky:A (1.68) BS06 XE 1.4.3.- GO:0005507 ... Q96X16 15533431
    43751 1rky:A (1.68) BS07 XE 1.4.3.- GO:0005507 ... Q96X16 15533431
    43752 1rky:A (1.68) BS08 XE 1.4.3.- GO:0005507 ... Q96X16 15533431
    43753 1rky:A (1.68) BS09 XE 1.4.3.- GO:0005507 ... Q96X16 15533431
    43754 1rky:A (1.68) BS10 XE 1.4.3.- GO:0005507 ... Q96X16 15533431
    43755 1rl3:A (2.7) BS01 PCG ? GO:0001932 ... P00514 15274925
    43756 1rl3:B (2.7) BS01 PCG ? GO:0001932 ... P00514 15274925
    43757 1rl4:A (2.18) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 15010544
    43758 1rl4:A (2.18) BS02 BRR 3.5.1.88 GO:0042586 ... Q8I372 15010544
    43759 1rl4:A (2.18) BS03 BL5 3.5.1.88 GO:0042586 ... Q8I372 15010544 MOAD: ic50=130nM
    43760 1rl4:B (2.18) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 15010544
    43761 1rl4:B (2.18) BS02 BRR 3.5.1.88 GO:0042586 ... Q8I372 15010544
    43762 1rl4:B (2.18) BS03 BL5 3.5.1.88 GO:0042586 ... Q8I372 15010544 MOAD: ic50=130nM
    43763 1rl8:A (2.0) BS01 RIT 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03367 N/A
    43764 1rl8:B (2.0) BS01 RIT 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03367 N/A
    43765 1rl9:A (1.45) BS01 ADP 2.7.3.3 GO:0003824 ... P51541 14978299
    43766 1rl9:A (1.45) BS02 IOM 2.7.3.3 GO:0003824 ... P51541 14978299
    43767 1rla:A (2.1) BS01 MN 3.5.3.1 GO:0000050 ... P07824 8849731
    43768 1rla:A (2.1) BS02 MN 3.5.3.1 GO:0000050 ... P07824 8849731
    43769 1rla:B (2.1) BS01 MN 3.5.3.1 GO:0000050 ... P07824 8849731
    43770 1rla:B (2.1) BS02 MN 3.5.3.1 GO:0000050 ... P07824 8849731
    43771 1rla:C (2.1) BS01 MN 3.5.3.1 GO:0000050 ... P07824 8849731
    43772 1rla:C (2.1) BS02 MN 3.5.3.1 GO:0000050 ... P07824 8849731
    43773 1rlb:E (3.1) BS01 REA ? GO:0001654 ... P02753 7754382
    43774 1rlb:F (3.1) BS01 REA ? GO:0001654 ... P02753 7754382
    43775 1rlc:L (2.7) BS01 CAP 4.1.1.39 GO:0000287 ... P00876 8142899
    43776 1rlg:A (2.7) BS01 rna ? GO:0001682 ... O29494 15130473
    43777 1rlg:B (2.7) BS01 rna ? GO:0001682 ... O29494 15130473
    43778 1rlj:A (2.0) BS01 FMN ? GO:0010181 ... P50618 N/A
    43779 1rlm:A (1.9) BS01 MG 3.1.3.23 GO:0000287 ... P75792 15657928
    43780 1rlm:B (1.9) BS01 MG 3.1.3.23 GO:0000287 ... P75792 15657928
    43781 1rlm:C (1.9) BS01 MG 3.1.3.23 GO:0000287 ... P75792 15657928
    43782 1rlm:D (1.9) BS01 MG 3.1.3.23 GO:0000287 ... P75792 15657928
    43783 1rlo:A (2.0) BS01 MG 3.1.3.23 GO:0000287 ... P75792 15657928
    43784 1rlo:B (2.0) BS01 MG 3.1.3.23 GO:0000287 ... P75792 15657928
    43785 1rlo:C (2.0) BS01 MG 3.1.3.23 GO:0000287 ... P75792 15657928
    43786 1rlo:D (2.0) BS01 MG 3.1.3.23 GO:0000287 ... P75792 15657928
    43787 1rlp:C (-1.00) BS01 peptide 2.7.10.2 GO:0006897 ... P00523 7526465
    43788 1rlq:C (-1.00) BS01 peptide 2.7.10.2 GO:0006897 ... P00523 7526465
    43789 1rls:A (1.9) BS01 3GP 4.6.1.24 GO:0001411 ... P00651 7912696
    43790 1rlt:A (2.2) BS01 MG 3.1.3.23 GO:0000287 ... P75792 15657928
    43791 1rlt:A (2.2) BS02 AF3 3.1.3.23 GO:0000287 ... P75792 15657928
    43792 1rlt:B (2.2) BS01 MG 3.1.3.23 GO:0000287 ... P75792 15657928
    43793 1rlt:B (2.2) BS02 AF3 3.1.3.23 GO:0000287 ... P75792 15657928
    43794 1rlt:C (2.2) BS01 MG 3.1.3.23 GO:0000287 ... P75792 15657928
    43795 1rlt:C (2.2) BS02 AF3 3.1.3.23 GO:0000287 ... P75792 15657928
    43796 1rlt:D (2.2) BS01 MG 3.1.3.23 GO:0000287 ... P75792 15657928
    43797 1rlt:D (2.2) BS02 AF3 3.1.3.23 GO:0000287 ... P75792 15657928
    43798 1rlu:A (2.08) BS01 GSP ? GO:0000287 ... P9WN95 15342249
    43799 1rlw:A (2.4) BS01 CA 3.1.1.4
    3.1.1.5
    GO:0005509 ... P47712 9430701
    43800 1rlw:A (2.4) BS02 CA 3.1.1.4
    3.1.1.5
    GO:0005509 ... P47712 9430701

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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