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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    42601 1r2c:L (2.86) BS05 FE2 ? GO:0009772 ... P06009 15073325
    42602 1r2c:L (2.86) BS06 BCB ? GO:0009772 ... P06009 15073325
    42603 1r2c:L (2.86) BS07 BPB ? GO:0009772 ... P06009 15073325
    42604 1r2c:L (2.86) BS08 MQ7 ? GO:0009772 ... P06009 15073325
    42605 1r2c:M (2.86) BS01 BCB ? GO:0009772 ... P06010 15073325
    42606 1r2c:M (2.86) BS02 BCB ? GO:0009772 ... P06010 15073325
    42607 1r2c:M (2.86) BS03 BPB ? GO:0009772 ... P06010 15073325
    42608 1r2c:M (2.86) BS04 FE2 ? GO:0009772 ... P06010 15073325
    42609 1r2c:M (2.86) BS05 BCB ? GO:0009772 ... P06010 15073325
    42610 1r2c:M (2.86) BS06 BCB ? GO:0009772 ... P06010 15073325
    42611 1r2c:M (2.86) BS07 BPB ? GO:0009772 ... P06010 15073325
    42612 1r2c:M (2.86) BS08 MQ7 ? GO:0009772 ... P06010 15073325
    42613 1r2c:M (2.86) BS09 NS5 ? GO:0009772 ... P06010 15073325
    42614 1r2f:A (2.1) BS01 FE 1.17.4.1 GO:0004748 ... P17424 9748343
    42615 1r2f:A (2.1) BS02 FE 1.17.4.1 GO:0004748 ... P17424 9748343
    42616 1r2f:B (2.1) BS01 FE 1.17.4.1 GO:0004748 ... P17424 9748343
    42617 1r2f:B (2.1) BS02 FE 1.17.4.1 GO:0004748 ... P17424 9748343
    42618 1r2j:A (2.1) BS01 FAD ? GO:0003995 ... Q9KIE5 14623185
    42619 1r2m:A (1.0) BS01 MN ? GO:0005576 ... P79073 14555650
    42620 1r2n:A (-1.00) BS01 RET ? GO:0005216 ... P02945 12119389
    42621 1r2q:A (1.05) BS01 MG 3.6.5.2 GO:0003924 ... P20339 14684892
    42622 1r2q:A (1.05) BS02 GNP 3.6.5.2 GO:0003924 ... P20339 14684892
    42623 1r2r:B (1.5) BS01 MG 4.2.3.3
    5.3.1.1    		 GO:0004807 ... P00939 14643664
    42624 1r2u:A (-1.00) BS01 CA ? GO:0005509 ... Q7ZZB9 15109253
    42625 1r2y:A (2.34) BS01 dna 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P84131 14525999
    42626 1r2y:A (2.34) BS02 dna 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P84131 14525999
    42627 1r2y:A (2.34) BS03 ZN 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P84131 14525999
    42628 1r2z:A (1.63) BS01 dna 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P84131 14525999
    42629 1r2z:A (1.63) BS02 dna 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P84131 14525999
    42630 1r2z:A (1.63) BS03 ZN 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P84131 14525999
    42631 1r30:A (3.4) BS01 SAM 2.8.1.6 GO:0003824 ... P12996 14704425
    42632 1r30:A (3.4) BS02 SF4 2.8.1.6 GO:0003824 ... P12996 14704425
    42633 1r30:A (3.4) BS03 FES 2.8.1.6 GO:0003824 ... P12996 14704425
    42634 1r30:A (3.4) BS04 DTB 2.8.1.6 GO:0003824 ... P12996 14704425
    42635 1r30:B (3.4) BS01 SAM 2.8.1.6 GO:0003824 ... P12996 14704425
    42636 1r30:B (3.4) BS02 SF4 2.8.1.6 GO:0003824 ... P12996 14704425
    42637 1r30:B (3.4) BS03 FES 2.8.1.6 GO:0003824 ... P12996 14704425
    42638 1r30:B (3.4) BS04 DTB 2.8.1.6 GO:0003824 ... P12996 14704425
    42639 1r31:A (2.1) BS01 COA 1.1.1.88 GO:0004420 ... P13702 N/A
    42640 1r31:A (2.1) BS02 MEV 1.1.1.88 GO:0004420 ... P13702 N/A
    42641 1r31:B (2.1) BS01 COA 1.1.1.88 GO:0004420 ... P13702 N/A
    42642 1r31:B (2.1) BS02 MEV 1.1.1.88 GO:0004420 ... P13702 N/A
    42643 1r33:A (1.8) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 N/A
    42644 1r33:A (1.8) BS02 LKA 3.2.1.114 GO:0000139 ... Q24451 N/A MOAD: ic50=0.07mM
    42645 1r34:A (1.95) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 N/A
    42646 1r34:A (1.95) BS02 LKS 3.2.1.114 GO:0000139 ... Q24451 N/A MOAD: ic50=0.9mM
    42647 1r35:A (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 14599013
    42648 1r35:A (2.3) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 14599013
    42649 1r35:A (2.3) BS03 I58 1.14.13.39 GO:0004517 ... P29477 14599013 MOAD: ic50=6.09uM
    42650 1r35:B (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 14599013
    42651 1r35:B (2.3) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 14599013
    42652 1r35:B (2.3) BS03 I58 1.14.13.39 GO:0004517 ... P29477 14599013 MOAD: ic50=6.09uM
    42653 1r37:A (2.3) BS01 ZN 1.1.1.1 GO:0004022 ... P39462 14661950
    42654 1r37:A (2.3) BS02 ZN 1.1.1.1 GO:0004022 ... P39462 14661950
    42655 1r37:A (2.3) BS03 NAD 1.1.1.1 GO:0004022 ... P39462 14661950 MOAD: Kd=0.66uM
    42656 1r37:A (2.3) BS04 ETX 1.1.1.1 GO:0004022 ... P39462 14661950
    42657 1r37:B (2.3) BS01 ZN 1.1.1.1 GO:0004022 ... P39462 14661950
    42658 1r37:B (2.3) BS02 ZN 1.1.1.1 GO:0004022 ... P39462 14661950
    42659 1r37:B (2.3) BS03 NAD 1.1.1.1 GO:0004022 ... P39462 14661950 MOAD: Kd=0.66uM
    42660 1r37:B (2.3) BS04 ETX 1.1.1.1 GO:0004022 ... P39462 14661950
    42661 1r38:A (2.2) BS01 NAP 1.1.1.307 GO:0004032 ... O74237 15109252
    42662 1r38:B (2.2) BS01 NAP 1.1.1.307 GO:0004032 ... O74237 15109252
    42663 1r38:C (2.2) BS01 NAP 1.1.1.307 GO:0004032 ... O74237 15109252
    42664 1r38:D (2.2) BS01 NAP 1.1.1.307 GO:0004032 ... O74237 15109252
    42665 1r3c:A (2.0) BS01 MG 2.7.11.24 GO:0000077 ... Q16539 14726206
    42666 1r3e:A (2.1) BS01 rna 5.4.99.25 GO:0001522 ... Q9WZW0 14566049
    42667 1r3e:A (2.1) BS02 rna 5.4.99.25 GO:0001522 ... Q9WZW0 14566049
    42668 1r3n:A (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42669 1r3n:A (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42670 1r3n:A (2.7) BS03 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42671 1r3n:B (2.7) BS01 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42672 1r3n:B (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42673 1r3n:B (2.7) BS03 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42674 1r3n:C (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42675 1r3n:C (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42676 1r3n:C (2.7) BS03 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42677 1r3n:D (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42678 1r3n:D (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42679 1r3n:D (2.7) BS03 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42680 1r3n:E (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42681 1r3n:E (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42682 1r3n:E (2.7) BS03 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42683 1r3n:E (2.7) BS04 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42684 1r3n:F (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42685 1r3n:F (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42686 1r3n:G (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42687 1r3n:G (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42688 1r3n:G (2.7) BS03 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42689 1r3n:H (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42690 1r3n:H (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42691 1r3q:A (1.7) BS01 1CP 4.1.1.37 GO:0004853 ... P06132 14633982
    42692 1r3s:A (1.65) BS01 1CP 4.1.1.37 GO:0004853 ... P06132 14633982
    42693 1r3t:A (1.7) BS01 CP3 4.1.1.37 GO:0004853 ... P06132 14633982
    42694 1r3u:A (2.5) BS01 MG 2.4.2.8 GO:0000166 ... Q8R7L0 N/A
    42695 1r3u:B (2.5) BS01 MG 2.4.2.8 GO:0000166 ... Q8R7L0 N/A
    42696 1r3v:A (1.9) BS01 1CP 4.1.1.37 GO:0004853 ... P06132 14633982
    42697 1r3w:A (1.7) BS01 CP3 4.1.1.37 GO:0004853 ... P06132 14633982
    42698 1r3y:A (1.755) BS01 CP3 4.1.1.37 GO:0004853 ... P06132 14633982
    42699 1r42:A (2.2) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 14754895
    42700 1r43:A (2.8) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42701 1r43:A (2.8) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42702 1r43:B (2.8) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42703 1r43:B (2.8) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42704 1r43:B (2.8) BS03 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    42705 1r44:A (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    42706 1r44:B (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    42707 1r44:C (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    42708 1r44:D (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    42709 1r44:E (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    42710 1r44:F (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    42711 1r47:A (3.45) BS01 GAL 3.2.1.22 GO:0003824 ... P06280 15003450
    42712 1r47:B (3.45) BS01 GAL 3.2.1.22 GO:0003824 ... P06280 15003450
    42713 1r49:A (3.13) BS01 dna 5.6.2.1 GO:0003677 ... P11387 14594810
    42714 1r49:A (3.13) BS02 dna 5.6.2.1 GO:0003677 ... P11387 14594810
    42715 1r4a:A (2.3) BS01 MG ? GO:0000139 ... P61212 14718928
    42716 1r4a:A (2.3) BS02 GNP ? GO:0000139 ... P61212 14718928
    42717 1r4a:B (2.3) BS01 MG ? GO:0000139 ... P61212 14718928
    42718 1r4a:B (2.3) BS02 GNP ? GO:0000139 ... P61212 14718928
    42719 1r4a:C (2.3) BS01 MG ? GO:0000139 ... P61212 14718928
    42720 1r4a:C (2.3) BS02 GNP ? GO:0000139 ... P61212 14718928
    42721 1r4a:D (2.3) BS01 MG ? GO:0000139 ... P61212 14718928
    42722 1r4a:D (2.3) BS02 GNP ? GO:0000139 ... P61212 14718928
    42723 1r4f:A (2.3) BS01 CA 3.2.2.1 GO:0006139 ... Q9GPQ4 15050818
    42724 1r4f:B (2.3) BS01 CA 3.2.2.1 GO:0006139 ... Q9GPQ4 15050818
    42725 1r4f:B (2.3) BS02 AD3 3.2.2.1 GO:0006139 ... Q9GPQ4 15050818
    42726 1r4i:A (3.1) BS01 dna ? GO:0003700 ... P15207 15037741
    42727 1r4i:A (3.1) BS02 dna ? GO:0003700 ... P15207 15037741
    42728 1r4i:A (3.1) BS03 ZN ? GO:0003700 ... P15207 15037741
    42729 1r4i:A (3.1) BS04 ZN ? GO:0003700 ... P15207 15037741
    42730 1r4i:B (3.1) BS01 dna ? GO:0003700 ... P15207 15037741
    42731 1r4i:B (3.1) BS02 dna ? GO:0003700 ... P15207 15037741
    42732 1r4i:B (3.1) BS03 ZN ? GO:0003700 ... P15207 15037741
    42733 1r4i:B (3.1) BS04 ZN ? GO:0003700 ... P15207 15037741
    42734 1r4l:A (3.0) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 14754895
    42735 1r4l:A (3.0) BS02 XX5 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 14754895 BindingDB: IC50=0.44nM
    42736 1r4m:F (3.0) BS01 ZN 6.2.1.64 GO:0000278 ... Q8TBC4 14690597
    42737 1r4m:H (3.0) BS01 ZN 6.2.1.64 GO:0000278 ... Q8TBC4 14690597
    42738 1r4n:B (3.6) BS01 ATP 6.2.1.64 GO:0000278 ... Q8TBC4 14690597
    42739 1r4n:D (3.6) BS01 ATP 6.2.1.64 GO:0000278 ... Q8TBC4 14690597
    42740 1r4n:F (3.6) BS01 ZN 6.2.1.64 GO:0000278 ... Q8TBC4 14690597
    42741 1r4n:F (3.6) BS02 ATP 6.2.1.64 GO:0000278 ... Q8TBC4 14690597
    42742 1r4n:H (3.6) BS01 ZN 6.2.1.64 GO:0000278 ... Q8TBC4 14690597
    42743 1r4n:H (3.6) BS02 ATP 6.2.1.64 GO:0000278 ... Q8TBC4 14690597
    42744 1r4o:A (2.5) BS01 dna ? GO:0003700 ... P06536 1865905
    42745 1r4o:A (2.5) BS02 dna ? GO:0003700 ... P06536 1865905
    42746 1r4o:A (2.5) BS03 ZN ? GO:0003700 ... P06536 1865905
    42747 1r4o:A (2.5) BS04 ZN ? GO:0003700 ... P06536 1865905
    42748 1r4o:B (2.5) BS01 dna ? GO:0003700 ... P06536 1865905
    42749 1r4o:B (2.5) BS02 ZN ? GO:0003700 ... P06536 1865905
    42750 1r4o:B (2.5) BS03 ZN ? GO:0003700 ... P06536 1865905
    42751 1r4p:A (1.77) BS01 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    42752 1r4p:A (1.77) BS02 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    42753 1r4p:A (1.77) BS03 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    42754 1r4p:A (1.77) BS04 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    42755 1r4p:A (1.77) BS05 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    42756 1r4p:A (1.77) BS06 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    42757 1r4p:B (1.77) BS01 1PS ? GO:0005576 ... P09386 15075327
    42758 1r4p:C (1.77) BS01 FMT ? GO:0005576 ... P09386 15075327
    42759 1r4p:C (1.77) BS02 1PS ? GO:0005576 ... P09386 15075327
    42760 1r4p:C (1.77) BS03 FMT ? GO:0005576 ... P09386 15075327
    42761 1r4p:D (1.77) BS01 1PS ? GO:0005576 ... P09386 15075327
    42762 1r4p:D (1.77) BS02 FMT ? GO:0005576 ... P09386 15075327
    42763 1r4p:E (1.77) BS01 FMT ? GO:0005576 ... P09386 15075327
    42764 1r4p:E (1.77) BS02 FMT ? GO:0005576 ... P09386 15075327
    42765 1r4p:F (1.77) BS01 1PS ? GO:0005576 ... P09386 15075327
    42766 1r4p:F (1.77) BS02 FMT ? GO:0005576 ... P09386 15075327
    42767 1r4r:A (3.0) BS01 dna ? GO:0003700 ... P06536 1865905
    42768 1r4r:A (3.0) BS02 dna ? GO:0003700 ... P06536 1865905
    42769 1r4r:A (3.0) BS03 ZN ? GO:0003700 ... P06536 1865905
    42770 1r4r:A (3.0) BS04 ZN ? GO:0003700 ... P06536 1865905
    42771 1r4r:B (3.0) BS01 dna ? GO:0003700 ... P06536 1865905
    42772 1r4r:B (3.0) BS02 dna ? GO:0003700 ... P06536 1865905
    42773 1r4r:B (3.0) BS03 ZN ? GO:0003700 ... P06536 1865905
    42774 1r4r:B (3.0) BS04 ZN ? GO:0003700 ... P06536 1865905
    42775 1r4s:A (1.8) BS01 CYS 1.7.3.3 GO:0004846 ... Q00511 14993669
    42776 1r4s:A (1.8) BS02 MUA 1.7.3.3 GO:0004846 ... Q00511 14993669
    42777 1r4u:A (1.65) BS01 OXC 1.7.3.3 GO:0004846 ... Q00511 14993669
    42778 1r4v:A (1.9) BS01 ZN ? GO:0046982 ... O66665 16287087
    42779 1r4v:A (1.9) BS02 ZN ? GO:0046982 ... O66665 16287087
    42780 1r4w:A (2.5) BS01 GSH 2.5.1.18 GO:0004364 ... P24473 14717589 MOAD: Kd=90uM
    PDBbind: -logKd/Ki=4.05, Kd=90uM
    42781 1r4w:B (2.5) BS01 GSH 2.5.1.18 GO:0004364 ... P24473 14717589 MOAD: Kd=90uM
    PDBbind: -logKd/Ki=4.05, Kd=90uM
    42782 1r4w:C (2.5) BS01 GSH 2.5.1.18 GO:0004364 ... P24473 14717589 MOAD: Kd=90uM
    42783 1r4w:C (2.5) BS02 GSH 2.5.1.18 GO:0004364 ... P24473 14717589 MOAD: Kd=90uM
    42784 1r4w:D (2.5) BS01 GSH 2.5.1.18 GO:0004364 ... P24473 14717589 MOAD: Kd=90uM
    42785 1r4w:D (2.5) BS02 GSH 2.5.1.18 GO:0004364 ... P24473 14717589 MOAD: Kd=90uM
    42786 1r4z:A (1.8) BS01 RIL 3.1.1.3 GO:0004806 ... P37957 16342303
    42787 1r4z:B (1.8) BS01 RIL 3.1.1.3 GO:0004806 ... P37957 16342303
    42788 1r50:A (1.45) BS01 SIL 3.1.1.3 GO:0004806 ... P37957 16342303
    42789 1r50:B (1.45) BS01 SIL 3.1.1.3 GO:0004806 ... P37957 16342303
    42790 1r51:A (1.75) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 14993669
    42791 1r54:A (1.85) BS01 ZN 3.4.24.- GO:0004222 ... Q9BZ11 14659745
    42792 1r54:A (1.85) BS02 CA 3.4.24.- GO:0004222 ... Q9BZ11 14659745
    42793 1r55:A (1.58) BS01 ZN 3.4.24.- GO:0004222 ... Q9BZ11 14659745
    42794 1r55:A (1.58) BS02 CA 3.4.24.- GO:0004222 ... Q9BZ11 14659745
    42795 1r55:A (1.58) BS03 097 3.4.24.- GO:0004222 ... Q9BZ11 14659745
    42796 1r58:A (1.9) BS01 MN 3.4.11.18 GO:0006508 ... P50579 15012983
    42797 1r58:A (1.9) BS02 MN 3.4.11.18 GO:0006508 ... P50579 15012983
    42798 1r58:A (1.9) BS03 AO5 3.4.11.18 GO:0006508 ... P50579 15012983 PDBbind: -logKd/Ki=6.96, IC50=0.11uM
    BindingDB: IC50=110nM
    42799 1r5a:A (2.5) BS01 CU 2.5.1.18 GO:0004364 ... Q9GQG7 15717864
    42800 1r5a:A (2.5) BS02 GTS 2.5.1.18 GO:0004364 ... Q9GQG7 15717864
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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