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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    42001 1qsg:A (1.75) BS01 GLC 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    42002 1qsg:A (1.75) BS02 NAD 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    42003 1qsg:A (1.75) BS03 TCL 1.3.1.9 GO:0004318 ... P0AEK4 10398587 BindingDB: IC50=430nM
    42004 1qsg:B (1.75) BS01 GLC 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    42005 1qsg:B (1.75) BS02 NAD 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    42006 1qsg:B (1.75) BS03 TCL 1.3.1.9 GO:0004318 ... P0AEK4 10398587 BindingDB: IC50=430nM
    42007 1qsg:C (1.75) BS01 GLC 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    42008 1qsg:C (1.75) BS02 NAD 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    42009 1qsg:C (1.75) BS03 TCL 1.3.1.9 GO:0004318 ... P0AEK4 10398587 BindingDB: IC50=430nM
    42010 1qsg:D (1.75) BS01 NAD 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    42011 1qsg:D (1.75) BS02 TCL 1.3.1.9 GO:0004318 ... P0AEK4 10398587 BindingDB: IC50=430nM
    42012 1qsg:E (1.75) BS01 GLC 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    42013 1qsg:E (1.75) BS02 NAD 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    42014 1qsg:E (1.75) BS03 TCL 1.3.1.9 GO:0004318 ... P0AEK4 10398587 BindingDB: IC50=430nM
    42015 1qsg:F (1.75) BS01 GLC 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    42016 1qsg:F (1.75) BS02 NAD 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    42017 1qsg:F (1.75) BS03 TCL 1.3.1.9 GO:0004318 ... P0AEK4 10398587 BindingDB: IC50=430nM
    42018 1qsg:G (1.75) BS01 GLC 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    42019 1qsg:G (1.75) BS02 NAD 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    42020 1qsg:G (1.75) BS03 TCL 1.3.1.9 GO:0004318 ... P0AEK4 10398587 BindingDB: IC50=430nM
    42021 1qsg:H (1.75) BS01 GLC 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    42022 1qsg:H (1.75) BS02 NAD 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    42023 1qsg:H (1.75) BS03 TCL 1.3.1.9 GO:0004318 ... P0AEK4 10398587 BindingDB: IC50=430nM
    42024 1qsh:A (1.7) BS01 HEM ? GO:0004601 ... P69905 10512707
    42025 1qsh:B (1.7) BS01 HEG ? GO:0004601 ... P68871 10512707
    42026 1qsh:C (1.7) BS01 HEM ? GO:0004601 ... P69905 10512707
    42027 1qsh:D (1.7) BS01 HEG ? GO:0004601 ... P68871 10512707
    42028 1qsi:A (1.7) BS01 HEM ? GO:0004601 ... P69905 10512707
    42029 1qsi:A (1.7) BS02 CMO ? GO:0004601 ... P69905 10512707
    42030 1qsi:B (1.7) BS01 HEG ? GO:0004601 ... P68871 10512707
    42031 1qsi:C (1.7) BS01 HEM ? GO:0004601 ... P69905 10512707
    42032 1qsi:C (1.7) BS02 CMO ? GO:0004601 ... P69905 10512707
    42033 1qsi:D (1.7) BS01 HEG ? GO:0004601 ... P68871 10512707
    42034 1qsl:A (2.2) BS01 dna 2.7.7.7 GO:0003676 ... P00582 10631518
    42035 1qsl:A (2.2) BS02 EU 2.7.7.7 GO:0003676 ... P00582 10631518
    42036 1qsm:A (2.4) BS01 ACO 2.3.1.48 GO:0004402 ... Q06592 10600387
    42037 1qsm:B (2.4) BS01 ACO 2.3.1.48 GO:0004402 ... Q06592 10600387
    42038 1qsm:C (2.4) BS01 ACO 2.3.1.48 GO:0004402 ... Q06592 10600387
    42039 1qsm:D (2.4) BS01 ACO 2.3.1.48 GO:0004402 ... Q06592 10600387
    42040 1qsn:A (2.2) BS01 peptide 2.3.1.48 GO:0004402 ... Q27198 10485713
    42041 1qsn:A (2.2) BS02 COA 2.3.1.48 GO:0004402 ... Q27198 10485713
    42042 1qsr:A (2.0) BS01 ACO 2.3.1.48 GO:0004402 ... Q27198 10485713
    42043 1qss:A (2.3) BS01 dna 2.7.7.7 GO:0001882 ... P19821 10449720
    42044 1qss:A (2.3) BS02 dna 2.7.7.7 GO:0001882 ... P19821 10449720
    42045 1qss:A (2.3) BS03 MG 2.7.7.7 GO:0001882 ... P19821 10449720
    42046 1qss:A (2.3) BS04 MG 2.7.7.7 GO:0001882 ... P19821 10449720
    42047 1qss:A (2.3) BS05 DG3 2.7.7.7 GO:0001882 ... P19821 10449720
    42048 1qsy:A (2.3) BS01 dna 2.7.7.7 GO:0001882 ... P19821 10449720
    42049 1qsy:A (2.3) BS02 dna 2.7.7.7 GO:0001882 ... P19821 10449720
    42050 1qsy:A (2.3) BS03 MG 2.7.7.7 GO:0001882 ... P19821 10449720
    42051 1qsy:A (2.3) BS04 MG 2.7.7.7 GO:0001882 ... P19821 10449720
    42052 1qsy:A (2.3) BS05 DDS 2.7.7.7 GO:0001882 ... P19821 10449720
    42053 1qt1:A (1.85) BS01 CO 5.3.1.5 GO:0000287 ... P50910 10666592
    42054 1qt1:A (1.85) BS02 CO 5.3.1.5 GO:0000287 ... P50910 10666592
    42055 1qt1:B (1.85) BS01 CO 5.3.1.5 GO:0000287 ... P50910 10666592
    42056 1qt1:B (1.85) BS02 CO 5.3.1.5 GO:0000287 ... P50910 10666592
    42057 1qt9:A (1.3) BS01 FES ? GO:0005515 ... P0A3C8 10625442
    42058 1qti:A (2.5) BS01 GNT 3.1.1.7 GO:0001507 ... P04058 11119642 PDBbind: -logKd/Ki=6.44, IC50=0.36uM
    BindingDB: IC50=1069nM, Ki=1.9e+2nM
    42059 1qtk:A (2.03) BS01 KR 3.2.1.17 GO:0003796 ... P00698 9443341
    42060 1qtm:A (2.3) BS01 dna 2.7.7.7 GO:0001882 ... P19821 10449720
    42061 1qtm:A (2.3) BS02 dna 2.7.7.7 GO:0001882 ... P19821 10449720
    42062 1qtm:A (2.3) BS03 MG 2.7.7.7 GO:0001882 ... P19821 10449720
    42063 1qtm:A (2.3) BS04 MG 2.7.7.7 GO:0001882 ... P19821 10449720
    42064 1qtm:A (2.3) BS05 TTP 2.7.7.7 GO:0001882 ... P19821 10449720
    42065 1qtn:A (1.2) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10508785
    42066 1qtn:B (1.2) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10508785
    42067 1qtq:A (2.25) BS01 rna 6.1.1.18 GO:0000166 ... P00962 9562563 PDBbind: Ki=1.32uM
    42068 1qtq:A (2.25) BS02 QSI 6.1.1.18 GO:0000166 ... P00962 9562563
    42069 1qtw:A (1.02) BS01 ZN 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    42070 1qtw:A (1.02) BS02 ZN 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    42071 1qtw:A (1.02) BS03 ZN 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    42072 1qtx:A (1.65) BS01 peptide ? GO:0005509 ... A0MMD0 N/A
    42073 1qtx:A (1.65) BS02 CA ? GO:0005509 ... A0MMD0 N/A
    42074 1qtx:A (1.65) BS03 CA ? GO:0005509 ... A0MMD0 N/A
    42075 1qtx:A (1.65) BS04 CA ? GO:0005509 ... A0MMD0 N/A
    42076 1qtx:A (1.65) BS05 CA ? GO:0005509 ... A0MMD0 N/A
    42077 1qu2:A (2.2) BS01 rna 6.1.1.5 GO:0000049 ... P41972 10446055
    42078 1qu2:A (2.2) BS02 ZN 6.1.1.5 GO:0000049 ... P41972 10446055
    42079 1qu2:A (2.2) BS03 MRC 6.1.1.5 GO:0000049 ... P41972 10446055 BindingDB: IC50=20000nM
    42080 1qu3:A (2.9) BS01 rna 6.1.1.5 GO:0000049 ... P41972 10446055
    42081 1qu3:A (2.9) BS02 MRC 6.1.1.5 GO:0000049 ... P41972 10446055 BindingDB: IC50=20000nM
    42082 1qu4:A (2.9) BS01 PLP 4.1.1.17 GO:0003824 ... P07805 10563800
    42083 1qu4:B (2.9) BS01 PLP 4.1.1.17 GO:0003824 ... P07805 10563800
    42084 1qu4:C (2.9) BS01 PLP 4.1.1.17 GO:0003824 ... P07805 10563800
    42085 1qu4:D (2.9) BS01 PLP 4.1.1.17 GO:0003824 ... P07805 10563800
    42086 1qua:A (2.2) BS01 ZN 3.4.24.- GO:0004222 ... P60244 10531480
    42087 1que:A (1.8) BS01 SO4 1.18.1.2 GO:0016491 ... P21890 8890910
    42088 1que:A (1.8) BS02 FAD 1.18.1.2 GO:0016491 ... P21890 8890910
    42089 1quf:A (2.25) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 8890910
    42090 1quf:A (2.25) BS02 NAP 1.18.1.2 GO:0016491 ... P21890 8890910
    42091 1qui:A (1.9) BS01 PO4 ? GO:0006817 ... P0AG82 8652549
    42092 1quj:A (1.9) BS01 PO4 ? GO:0006817 ... P0AG82 8652549
    42093 1quk:A (1.7) BS01 PO4 ? GO:0006817 ... P0AG82 8652549
    42094 1qul:A (1.7) BS01 PO4 ? GO:0006817 ... P0AG82 8652549
    42095 1qum:A (1.55) BS01 dna 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    42096 1qum:A (1.55) BS02 dna 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    42097 1qum:A (1.55) BS03 dna 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    42098 1qum:A (1.55) BS04 ZN 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    42099 1qum:A (1.55) BS05 ZN 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    42100 1qum:A (1.55) BS06 ZN 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    42101 1qur:H (2.0) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 10504391
    42102 1qur:H (2.0) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 10504391
    42103 1qv0:A (1.1) BS01 CZH 1.13.12.5 GO:0005509 ... Q27709 14592432
    42104 1qv1:A (1.1) BS01 CA 1.13.12.5 GO:0005509 ... Q27709 14592432
    42105 1qv1:A (1.1) BS02 CZH 1.13.12.5 GO:0005509 ... Q27709 14592432
    42106 1qv6:A (1.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    42107 1qv6:A (1.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    42108 1qv6:A (1.8) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 15023053
    42109 1qv6:A (1.8) BS04 24B 1.1.1.1 GO:0004022 ... P00327 15023053
    42110 1qv6:B (1.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    42111 1qv6:B (1.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    42112 1qv6:B (1.8) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 15023053
    42113 1qv6:B (1.8) BS04 24B 1.1.1.1 GO:0004022 ... P00327 15023053
    42114 1qv7:A (1.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    42115 1qv7:A (1.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    42116 1qv7:A (1.8) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 15023053
    42117 1qv7:A (1.8) BS04 DFB 1.1.1.1 GO:0004022 ... P00327 15023053
    42118 1qv7:B (1.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    42119 1qv7:B (1.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    42120 1qv7:B (1.8) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 15023053
    42121 1qv7:B (1.8) BS04 DFB 1.1.1.1 GO:0004022 ... P00327 15023053
    42122 1qvf:1 (3.1) BS01 rna ? GO:0003735 ... P22452 14561884
    42123 1qvf:2 (3.1) BS01 rna ? GO:0000049 ... P32411 14561884
    42124 1qvf:2 (3.1) BS02 rna ? GO:0000049 ... P32411 14561884
    42125 1qvf:2 (3.1) BS03 MG ? GO:0000049 ... P32411 14561884
    42126 1qvf:A (3.1) BS01 rna ? GO:0002181 ... P20276 14561884
    42127 1qvf:A (3.1) BS02 MG ? GO:0002181 ... P20276 14561884
    42128 1qvf:B (3.1) BS01 rna ? GO:0003723 ... P20279 14561884
    42129 1qvf:C (3.1) BS01 rna ? GO:0003723 ... P12735 14561884
    42130 1qvf:D (3.1) BS01 rna ? GO:0000049 ... P14124 14561884
    42131 1qvf:D (3.1) BS02 rna ? GO:0000049 ... P14124 14561884
    42132 1qvf:E (3.1) BS01 rna ? GO:0002181 ... P14135 14561884
    42133 1qvf:F (3.1) BS01 rna ? GO:0001682 ... P12743 14561884
    42134 1qvf:H (3.1) BS01 rna ? GO:0000027 ... P60617 14561884
    42135 1qvf:I (3.1) BS01 rna ? GO:0003729 ... P29198 14561884
    42136 1qvf:J (3.1) BS01 rna ? GO:0003735 ... P22450 14561884
    42137 1qvf:K (3.1) BS01 rna ? GO:0003735 ... P12737 14561884
    42138 1qvf:L (3.1) BS01 rna ? GO:0002181 ... P60618 14561884
    42139 1qvf:M (3.1) BS01 rna ? GO:0000027 ... P14123 14561884
    42140 1qvf:M (3.1) BS02 rna ? GO:0000027 ... P14123 14561884
    42141 1qvf:N (3.1) BS01 rna ? GO:0003723 ... P12733 14561884
    42142 1qvf:O (3.1) BS01 rna ? GO:0003723 ... P14119 14561884
    42143 1qvf:P (3.1) BS01 rna ? GO:0003735 ... P12734 14561884
    42144 1qvf:P (3.1) BS02 rna ? GO:0003735 ... P12734 14561884
    42145 1qvf:Q (3.1) BS01 rna ? GO:0002181 ... P10970 14561884
    42146 1qvf:R (3.1) BS01 rna ? GO:0000027 ... P12732 14561884
    42147 1qvf:S (3.1) BS01 rna ? GO:0002181 ... P10972 14561884
    42148 1qvf:S (3.1) BS02 MG ? GO:0002181 ... P10972 14561884
    42149 1qvf:T (3.1) BS01 rna ? GO:0003735 ... P14116 14561884
    42150 1qvf:U (3.1) BS01 rna ? GO:0003735 ... P10971 14561884
    42151 1qvf:V (3.1) BS01 rna ? GO:0000463 ... P14121 14561884
    42152 1qvf:V (3.1) BS02 rna ? GO:0000463 ... P14121 14561884
    42153 1qvf:W (3.1) BS01 rna ? GO:0002181 ... P18138 14561884
    42154 1qvf:X (3.1) BS01 rna ? GO:0000166 ... P12736 14561884
    42155 1qvf:X (3.1) BS02 MG ? GO:0000166 ... P12736 14561884
    42156 1qvf:Y (3.1) BS01 rna ? GO:0003735 ... P60619 14561884
    42157 1qvf:Z (3.1) BS01 rna ? GO:0003723 ... P32410 14561884
    42158 1qvg:1 (2.9) BS01 rna ? GO:0003735 ... P22452 14561884
    42159 1qvg:2 (2.9) BS01 rna ? GO:0000049 ... P32411 14561884
    42160 1qvg:2 (2.9) BS02 rna ? GO:0000049 ... P32411 14561884
    42161 1qvg:2 (2.9) BS03 MG ? GO:0000049 ... P32411 14561884
    42162 1qvg:A (2.9) BS01 rna ? GO:0002181 ... P20276 14561884
    42163 1qvg:B (2.9) BS01 rna ? GO:0003723 ... P20279 14561884
    42164 1qvg:C (2.9) BS01 rna ? GO:0003723 ... P12735 14561884
    42165 1qvg:D (2.9) BS01 rna ? GO:0000049 ... P14124 14561884
    42166 1qvg:D (2.9) BS02 rna ? GO:0000049 ... P14124 14561884
    42167 1qvg:E (2.9) BS01 rna ? GO:0002181 ... P14135 14561884
    42168 1qvg:F (2.9) BS01 rna ? GO:0001682 ... P12743 14561884
    42169 1qvg:H (2.9) BS01 rna ? GO:0000027 ... P60617 14561884
    42170 1qvg:I (2.9) BS01 rna ? GO:0003729 ... P29198 14561884
    42171 1qvg:J (2.9) BS01 rna ? GO:0003735 ... P22450 14561884
    42172 1qvg:K (2.9) BS01 rna ? GO:0003735 ... P12737 14561884
    42173 1qvg:L (2.9) BS01 rna ? GO:0002181 ... P60618 14561884
    42174 1qvg:M (2.9) BS01 rna ? GO:0000027 ... P14123 14561884
    42175 1qvg:M (2.9) BS02 rna ? GO:0000027 ... P14123 14561884
    42176 1qvg:N (2.9) BS01 rna ? GO:0003723 ... P12733 14561884
    42177 1qvg:O (2.9) BS01 rna ? GO:0003723 ... P14119 14561884
    42178 1qvg:P (2.9) BS01 rna ? GO:0003735 ... P12734 14561884
    42179 1qvg:P (2.9) BS02 rna ? GO:0003735 ... P12734 14561884
    42180 1qvg:Q (2.9) BS01 rna ? GO:0002181 ... P10970 14561884
    42181 1qvg:R (2.9) BS01 rna ? GO:0000027 ... P12732 14561884
    42182 1qvg:S (2.9) BS01 rna ? GO:0002181 ... P10972 14561884
    42183 1qvg:S (2.9) BS02 MG ? GO:0002181 ... P10972 14561884
    42184 1qvg:T (2.9) BS01 rna ? GO:0003735 ... P14116 14561884
    42185 1qvg:U (2.9) BS01 rna ? GO:0003735 ... P10971 14561884
    42186 1qvg:V (2.9) BS01 rna ? GO:0000463 ... P14121 14561884
    42187 1qvg:V (2.9) BS02 rna ? GO:0000463 ... P14121 14561884
    42188 1qvg:W (2.9) BS01 rna ? GO:0002181 ... P18138 14561884
    42189 1qvg:X (2.9) BS01 rna ? GO:0000166 ... P12736 14561884
    42190 1qvg:X (2.9) BS02 MG ? GO:0000166 ... P12736 14561884
    42191 1qvg:Y (2.9) BS01 rna ? GO:0003735 ... P60619 14561884
    42192 1qvg:Z (2.9) BS01 rna ? GO:0003723 ... P32410 14561884
    42193 1qvi:A (2.54) BS01 MG ? GO:0003774 ... P24733 14656445
    42194 1qvi:A (2.54) BS02 ADP ? GO:0003774 ... P24733 14656445
    42195 1qvi:Y (2.54) BS01 MG ? GO:0005509 ... P13543 14656445
    42196 1qvi:Z (2.54) BS01 CA ? GO:0005509 ... P07291 14656445
    42197 1qvj:A (1.91) BS01 RP5 3.6.1.13 GO:0047631 ... Q9BW91 12948489
    42198 1qvn:A (2.7) BS01 FRI ? GO:0002250 ... P60568 17032757
    42199 1qvn:B (2.7) BS01 FRI ? GO:0002250 ... P60568 17032757
    42200 1qvn:C (2.7) BS01 FRI ? GO:0002250 ... P60568 17032757
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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