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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    41601 1qmp:A (2.0) BS01 CA ? GO:0000160 ... P52934 10556024
    41602 1qmp:B (2.0) BS01 CA ? GO:0000160 ... P52934 10556024
    41603 1qmp:C (2.0) BS01 CA ? GO:0000160 ... P52934 10556024
    41604 1qmp:D (2.0) BS01 CA ? GO:0000160 ... P52934 10556024
    41605 1qmq:A (1.55) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 10557259
    41606 1qmq:A (1.55) BS02 DRB 1.14.15.1 GO:0004497 ... P00183 10557259
    41607 1qmq:A (1.55) BS03 DRB 1.14.15.1 GO:0004497 ... P00183 10557259
    41608 1qmu:A (2.7) BS01 ZN 3.4.17.22 GO:0004180 ... P83852 10545093
    41609 1qmz:A (2.2) BS01 peptide 2.7.11.22 GO:0000082 ... P24941 10559988
    41610 1qmz:A (2.2) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 10559988
    41611 1qmz:A (2.2) BS03 MG 2.7.11.22 GO:0000082 ... P24941 10559988
    41612 1qmz:C (2.2) BS01 peptide 2.7.11.22 GO:0000082 ... P24941 10559988
    41613 1qmz:C (2.2) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 10559988
    41614 1qmz:C (2.2) BS03 MG 2.7.11.22 GO:0000082 ... P24941 10559988
    41615 1qn0:A (-1.00) BS01 HEC ? GO:0009055 ... P00133 10756105
    41616 1qn0:A (-1.00) BS02 HEC ? GO:0009055 ... P00133 10756105
    41617 1qn0:A (-1.00) BS03 HEC ? GO:0009055 ... P00133 10756105
    41618 1qn0:A (-1.00) BS04 HEC ? GO:0009055 ... P00133 10756105
    41619 1qn1:A (-1.00) BS01 HEC ? GO:0009055 ... P00133 10756105
    41620 1qn1:A (-1.00) BS02 HEC ? GO:0009055 ... P00133 10756105
    41621 1qn1:A (-1.00) BS03 HEC ? GO:0009055 ... P00133 10756105
    41622 1qn1:A (-1.00) BS04 HEC ? GO:0009055 ... P00133 10756105
    41623 1qn2:A (2.01) BS01 HEC ? GO:0009055 ... Q7SIA4 10386873
    41624 1qn2:B (2.01) BS01 HEC ? GO:0009055 ... Q7SIA4 10386873
    41625 1qn2:C (2.01) BS01 HEC ? GO:0009055 ... Q7SIA4 10386873
    41626 1qn3:A (1.95) BS01 dna ? GO:0003677 ... P28147 10617571
    41627 1qn3:A (1.95) BS02 dna ? GO:0003677 ... P28147 10617571
    41628 1qn3:B (1.95) BS01 dna ? GO:0003677 ... P28147 10617571
    41629 1qn3:B (1.95) BS02 dna ? GO:0003677 ... P28147 10617571
    41630 1qn4:A (1.86) BS01 dna ? GO:0003677 ... P28147 10617571
    41631 1qn4:A (1.86) BS02 dna ? GO:0003677 ... P28147 10617571
    41632 1qn4:B (1.86) BS01 dna ? GO:0003677 ... P28147 10617571
    41633 1qn4:B (1.86) BS02 dna ? GO:0003677 ... P28147 10617571
    41634 1qn5:A (1.93) BS01 dna ? GO:0003677 ... P28147 10617571
    41635 1qn5:A (1.93) BS02 dna ? GO:0003677 ... P28147 10617571
    41636 1qn5:B (1.93) BS01 dna ? GO:0003677 ... P28147 10617571
    41637 1qn5:B (1.93) BS02 dna ? GO:0003677 ... P28147 10617571
    41638 1qn6:A (2.1) BS01 dna ? GO:0003677 ... P28147 10617571
    41639 1qn6:A (2.1) BS02 dna ? GO:0003677 ... P28147 10617571
    41640 1qn6:B (2.1) BS01 dna ? GO:0003677 ... P28147 10617571
    41641 1qn6:B (2.1) BS02 dna ? GO:0003677 ... P28147 10617571
    41642 1qn7:A (2.3) BS01 dna ? GO:0003677 ... P28147 10617571
    41643 1qn7:A (2.3) BS02 dna ? GO:0003677 ... P28147 10617571
    41644 1qn7:B (2.3) BS01 dna ? GO:0003677 ... P28147 10617571
    41645 1qn7:B (2.3) BS02 dna ? GO:0003677 ... P28147 10617571
    41646 1qn8:A (2.1) BS01 dna ? GO:0003677 ... P28147 10617571
    41647 1qn8:A (2.1) BS02 dna ? GO:0003677 ... P28147 10617571
    41648 1qn8:B (2.1) BS01 dna ? GO:0003677 ... P28147 10617571
    41649 1qn8:B (2.1) BS02 dna ? GO:0003677 ... P28147 10617571
    41650 1qn9:A (1.9) BS01 dna ? GO:0003677 ... P28147 10617571
    41651 1qn9:A (1.9) BS02 dna ? GO:0003677 ... P28147 10617571
    41652 1qn9:B (1.9) BS01 dna ? GO:0003677 ... P28147 10617571
    41653 1qn9:B (1.9) BS02 dna ? GO:0003677 ... P28147 10617571
    41654 1qna:A (1.8) BS01 dna ? GO:0003677 ... P28147 10617571
    41655 1qna:A (1.8) BS02 dna ? GO:0003677 ... P28147 10617571
    41656 1qna:B (1.8) BS01 dna ? GO:0003677 ... P28147 10617571
    41657 1qna:B (1.8) BS02 dna ? GO:0003677 ... P28147 10617571
    41658 1qnb:A (2.23) BS01 dna ? GO:0003677 ... P28147 10617571
    41659 1qnb:A (2.23) BS02 dna ? GO:0003677 ... P28147 10617571
    41660 1qnb:B (2.23) BS01 dna ? GO:0003677 ... P28147 10617571
    41661 1qnb:B (2.23) BS02 dna ? GO:0003677 ... P28147 10617571
    41662 1qnc:A (2.3) BS01 dna ? GO:0003677 ... P28147 10617571
    41663 1qnc:A (2.3) BS02 dna ? GO:0003677 ... P28147 10617571
    41664 1qnc:B (2.3) BS01 dna ? GO:0003677 ... P28147 10617571
    41665 1qnc:B (2.3) BS02 dna ? GO:0003677 ... P28147 10617571
    41666 1qne:A (1.9) BS01 dna ? GO:0003677 ... P28147 10617571
    41667 1qne:A (1.9) BS02 dna ? GO:0003677 ... P28147 10617571
    41668 1qne:B (1.9) BS01 dna ? GO:0003677 ... P28147 10617571
    41669 1qne:B (1.9) BS02 dna ? GO:0003677 ... P28147 10617571
    41670 1qnf:A (1.8) BS01 FAD 4.1.99.3 GO:0000166 ... P05327 9360600
    41671 1qnf:A (1.8) BS02 HDF 4.1.99.3 GO:0000166 ... P05327 9360600
    41672 1qng:A (2.1) BS01 peptide 5.2.1.8 GO:0000413 ... Q25756 10756109
    41673 1qnh:A (2.1) BS01 peptide 5.2.1.8 GO:0000413 ... Q25756 10756109
    41674 1qnh:B (2.1) BS01 peptide 5.2.1.8 GO:0000413 ... Q25756 10756109
    41675 1qni:A (2.4) BS01 CUA ? GO:0004129 ... Q7SIA3 10700275
    41676 1qni:A (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    41677 1qni:A (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    41678 1qni:B (2.4) BS01 CUA ? GO:0004129 ... Q7SIA3 10700275
    41679 1qni:B (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    41680 1qni:B (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    41681 1qni:C (2.4) BS01 CUA ? GO:0004129 ... Q7SIA3 10700275
    41682 1qni:C (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    41683 1qni:C (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    41684 1qni:D (2.4) BS01 CUA ? GO:0004129 ... Q7SIA3 10700275
    41685 1qni:D (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    41686 1qni:D (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    41687 1qni:E (2.4) BS01 CUA ? GO:0004129 ... Q7SIA3 10700275
    41688 1qni:E (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    41689 1qni:E (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    41690 1qni:F (2.4) BS01 CUA ? GO:0004129 ... Q7SIA3 10700275
    41691 1qni:F (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    41692 1qni:F (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    41693 1qnl:A (2.7) BS01 BMD ? GO:0006865 ... P27017 10708652
    41694 1qnm:A (2.3) BS01 MN 1.15.1.1 GO:0004784 ... P04179 9537988
    41695 1qnm:B (2.3) BS01 MN 1.15.1.1 GO:0004784 ... P04179 9537988
    41696 1qnn:A (1.8) BS01 FE 1.15.1.1 GO:0004784 ... P19665 10848964
    41697 1qnn:B (1.8) BS01 FE 1.15.1.1 GO:0004784 ... P19665 10848964
    41698 1qnn:C (1.8) BS01 FE 1.15.1.1 GO:0004784 ... P19665 10848964
    41699 1qnn:D (1.8) BS01 FE 1.15.1.1 GO:0004784 ... P19665 10848964
    41700 1qnq:A (1.65) BS01 TPT 3.2.1.78 GO:0000272 ... Q99036 10666621
    41701 1qnq:A (1.65) BS02 TPT 3.2.1.78 GO:0000272 ... Q99036 10666621
    41702 1qnr:A (1.4) BS01 BMA 3.2.1.78 GO:0000272 ... Q99036 10666621
    41703 1qnr:A (1.4) BS02 BMA 3.2.1.78 GO:0000272 ... Q99036 10666621
    41704 1qnu:A (2.23) BS01 GAL ? GO:0005576 ... V5URS0 10688205
    41705 1qnu:A (2.23) BS02 GAL ? GO:0005576 ... V5URS0 10688205
    41706 1qnu:B (2.23) BS01 GAL ? GO:0005576 ... V5URS0 10688205
    41707 1qnu:B (2.23) BS02 GAL ? GO:0005576 ... V5URS0 10688205
    41708 1qnu:C (2.23) BS01 GAL ? GO:0005576 ... V5URS0 10688205
    41709 1qnu:C (2.23) BS02 GAL ? GO:0005576 ... V5URS0 10688205
    41710 1qnu:D (2.23) BS01 GAL ? GO:0005576 ... V5URS0 10688205
    41711 1qnu:D (2.23) BS02 GAL ? GO:0005576 ... V5URS0 10688205
    41712 1qnu:E (2.23) BS01 GAL ? GO:0005576 ... V5URS0 10688205
    41713 1qnu:E (2.23) BS02 GAL ? GO:0005576 ... V5URS0 10688205
    41714 1qnv:A (2.5) BS01 PB 4.2.1.24 GO:0004655 ... P05373 10739915
    41715 1qnw:A (2.35) BS01 MN ? GO:0030246 ... P22973 10966800
    41716 1qnw:A (2.35) BS02 CA ? GO:0030246 ... P22973 10966800
    41717 1qnw:B (2.35) BS01 MN ? GO:0030246 ... P22973 10966800
    41718 1qnw:B (2.35) BS02 CA ? GO:0030246 ... P22973 10966800
    41719 1qnw:C (2.35) BS01 MN ? GO:0030246 ... P22973 10966800
    41720 1qnw:C (2.35) BS02 CA ? GO:0030246 ... P22973 10966800
    41721 1qnw:D (2.35) BS01 MN ? GO:0030246 ... P22973 10966800
    41722 1qnw:D (2.35) BS02 CA ? GO:0030246 ... P22973 10966800
    41723 1qny:A (1.8) BS01 MN ? GO:0030246 ... P02866 10771422
    41724 1qny:A (1.8) BS02 CA ? GO:0030246 ... P02866 10771422
    41725 1qnz:H (-1.00) BS01 peptide ? GO:0002250 ... P01750 10801487
    41726 1qnz:L (-1.00) BS01 peptide ? GO:0002250 ... P01665 10801487
    41727 1qo0:A (2.25) BS01 BMD ? GO:0006865 ... P27017 10508151
    41728 1qo0:B (2.25) BS01 BMD ? GO:0006865 ... P27017 10508151
    41729 1qo4:A (3.0) BS01 HEM 1.11.1.7 GO:0002215 ... Q42578 11551197
    41730 1qo4:A (3.0) BS02 CA 1.11.1.7 GO:0002215 ... Q42578 11551197
    41731 1qo4:A (3.0) BS03 CA 1.11.1.7 GO:0002215 ... Q42578 11551197
    41732 1qo8:A (2.15) BS01 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    41733 1qo8:A (2.15) BS02 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    41734 1qo8:A (2.15) BS03 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    41735 1qo8:A (2.15) BS04 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    41736 1qo8:A (2.15) BS05 FAD 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    41737 1qo8:D (2.15) BS01 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    41738 1qo8:D (2.15) BS02 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    41739 1qo8:D (2.15) BS03 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    41740 1qo8:D (2.15) BS04 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    41741 1qo8:D (2.15) BS05 FAD 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    41742 1qoa:A (1.7) BS01 FES ? GO:0009055 ... P0A3C7 9398238
    41743 1qoa:B (1.7) BS01 FES ? GO:0009055 ... P0A3C7 9398238
    41744 1qob:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    41745 1qob:B (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    41746 1qof:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    41747 1qof:B (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    41748 1qog:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    41749 1qog:B (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    41750 1qom:A (2.7) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 10562539
    41751 1qom:A (2.7) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 10562539
    41752 1qom:B (2.7) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 10562539
    41753 1qom:B (2.7) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 10562539
    41754 1qoo:A (2.75) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    41755 1qoo:A (2.75) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    41756 1qoo:B (2.75) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    41757 1qoo:B (2.75) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    41758 1qoo:C (2.75) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    41759 1qoo:C (2.75) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    41760 1qoo:D (2.75) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    41761 1qoo:D (2.75) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    41762 1qop:B (1.4) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 10600108
    41763 1qop:B (1.4) BS02 NA 4.2.1.20 GO:0000162 ... P0A2K1 10600108
    41764 1qoq:A (1.8) BS01 IGP 4.2.1.20 GO:0000162 ... P00929 10600108
    41765 1qoq:B (1.8) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 10600108
    41766 1qor:A (2.2) BS01 NDP 1.6.5.5 GO:0003960 ... P28304 7602590
    41767 1qor:B (2.2) BS01 NDP 1.6.5.5 GO:0003960 ... P28304 7602590
    41768 1qos:A (2.95) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    41769 1qos:A (2.95) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    41770 1qos:B (2.95) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    41771 1qos:B (2.95) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    41772 1qot:A (3.0) BS01 GAL ? GO:0030246 ... Q9FVF8 10966800
    41773 1qot:A (3.0) BS02 FUC ? GO:0030246 ... Q9FVF8 10966800
    41774 1qot:A (3.0) BS03 MN ? GO:0030246 ... Q9FVF8 10966800
    41775 1qot:A (3.0) BS04 CA ? GO:0030246 ... Q9FVF8 10966800
    41776 1qot:B (3.0) BS01 GAL ? GO:0030246 ... Q9FVF8 10966800
    41777 1qot:B (3.0) BS02 FUC ? GO:0030246 ... Q9FVF8 10966800
    41778 1qot:B (3.0) BS03 MN ? GO:0030246 ... Q9FVF8 10966800
    41779 1qot:B (3.0) BS04 CA ? GO:0030246 ... Q9FVF8 10966800
    41780 1qot:C (3.0) BS01 GAL ? GO:0030246 ... Q9FVF8 10966800
    41781 1qot:C (3.0) BS02 FUC ? GO:0030246 ... Q9FVF8 10966800
    41782 1qot:C (3.0) BS03 MN ? GO:0030246 ... Q9FVF8 10966800
    41783 1qot:C (3.0) BS04 CA ? GO:0030246 ... Q9FVF8 10966800
    41784 1qot:D (3.0) BS01 GAL ? GO:0030246 ... Q9FVF8 10966800
    41785 1qot:D (3.0) BS02 FUC ? GO:0030246 ... Q9FVF8 10966800
    41786 1qot:D (3.0) BS03 MN ? GO:0030246 ... Q9FVF8 10966800
    41787 1qot:D (3.0) BS04 CA ? GO:0030246 ... Q9FVF8 10966800
    41788 1qov:H (2.1) BS01 CDL ? GO:0015979 ... P0C0Y7 10611277
    41789 1qov:L (2.1) BS01 BCL ? GO:0009772 ... P0C0Y8 10611277
    41790 1qov:L (2.1) BS02 BCL ? GO:0009772 ... P0C0Y8 10611277
    41791 1qov:L (2.1) BS03 U10 ? GO:0009772 ... P0C0Y8 10611277
    41792 1qov:L (2.1) BS04 BCL ? GO:0009772 ... P0C0Y8 10611277
    41793 1qov:L (2.1) BS05 BPH ? GO:0009772 ... P0C0Y8 10611277
    41794 1qov:L (2.1) BS06 BPH ? GO:0009772 ... P0C0Y8 10611277
    41795 1qov:L (2.1) BS07 FE2 ? GO:0009772 ... P0C0Y8 10611277
    41796 1qov:M (2.1) BS01 BCL ? GO:0009772 ... P0C0Y9 10611277
    41797 1qov:M (2.1) BS02 BCL ? GO:0009772 ... P0C0Y9 10611277
    41798 1qov:M (2.1) BS03 BCL ? GO:0009772 ... P0C0Y9 10611277
    41799 1qov:M (2.1) BS04 BPH ? GO:0009772 ... P0C0Y9 10611277
    41800 1qov:M (2.1) BS05 BPH ? GO:0009772 ... P0C0Y9 10611277
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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