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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    41201 1qia:A (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41202 1qia:A (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41203 1qia:B (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    41204 1qia:B (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    41205 1qia:B (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41206 1qia:B (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41207 1qia:B (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41208 1qia:C (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    41209 1qia:C (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    41210 1qia:C (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41211 1qia:C (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41212 1qia:C (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41213 1qia:D (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    41214 1qia:D (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    41215 1qia:D (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41216 1qia:D (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41217 1qia:D (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41218 1qib:A (2.8) BS01 ZN 3.4.24.24 GO:0004222 ... P08253 N/A
    41219 1qib:A (2.8) BS02 ZN 3.4.24.24 GO:0004222 ... P08253 N/A
    41220 1qib:A (2.8) BS03 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    41221 1qib:A (2.8) BS04 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    41222 1qib:A (2.8) BS05 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    41223 1qic:A (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    41224 1qic:A (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    41225 1qic:A (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41226 1qic:A (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41227 1qic:A (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41228 1qic:B (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    41229 1qic:B (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    41230 1qic:B (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41231 1qic:B (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41232 1qic:B (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41233 1qic:C (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    41234 1qic:C (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    41235 1qic:C (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41236 1qic:C (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41237 1qic:C (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41238 1qic:D (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    41239 1qic:D (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    41240 1qic:D (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41241 1qic:D (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41242 1qic:D (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    41243 1qin:A (2.0) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 10521255
    41244 1qin:A (2.0) BS02 GIP 4.4.1.5 GO:0004462 ... Q04760 10521255 MOAD: Ki=10nM
    PDBbind: -logKd/Ki=8.00, Ki=10nM
    41245 1qin:A (2.0) BS03 GIP 4.4.1.5 GO:0004462 ... Q04760 10521255 MOAD: Ki=10nM
    PDBbind: -logKd/Ki=8.00, Ki=10nM
    41246 1qin:B (2.0) BS01 GIP 4.4.1.5 GO:0004462 ... Q04760 10521255 MOAD: Ki=10nM
    PDBbind: -logKd/Ki=8.00, Ki=10nM
    41247 1qin:B (2.0) BS02 ZN 4.4.1.5 GO:0004462 ... Q04760 10521255
    41248 1qin:B (2.0) BS03 GIP 4.4.1.5 GO:0004462 ... Q04760 10521255 MOAD: Ki=10nM
    PDBbind: -logKd/Ki=8.00, Ki=10nM
    41249 1qip:A (1.72) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 10521255
    41250 1qip:A (1.72) BS02 GNB 4.4.1.5 GO:0004462 ... Q04760 10521255
    41251 1qip:A (1.72) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 10521255
    41252 1qip:A (1.72) BS04 GNB 4.4.1.5 GO:0004462 ... Q04760 10521255
    41253 1qip:B (1.72) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 10521255
    41254 1qip:B (1.72) BS02 GNB 4.4.1.5 GO:0004462 ... Q04760 10521255
    41255 1qip:B (1.72) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 10521255
    41256 1qip:B (1.72) BS04 GNB 4.4.1.5 GO:0004462 ... Q04760 10521255
    41257 1qip:C (1.72) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 10521255
    41258 1qip:C (1.72) BS02 GNB 4.4.1.5 GO:0004462 ... Q04760 10521255
    41259 1qip:C (1.72) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 10521255
    41260 1qip:C (1.72) BS04 GNB 4.4.1.5 GO:0004462 ... Q04760 10521255
    41261 1qip:D (1.72) BS01 GNB 4.4.1.5 GO:0004462 ... Q04760 10521255
    41262 1qip:D (1.72) BS02 ZN 4.4.1.5 GO:0004462 ... Q04760 10521255
    41263 1qip:D (1.72) BS03 GNB 4.4.1.5 GO:0004462 ... Q04760 10521255
    41264 1qip:D (1.72) BS04 ZN 4.4.1.5 GO:0004462 ... Q04760 10521255
    41265 1qip:D (1.72) BS05 GNB 4.4.1.5 GO:0004462 ... Q04760 10521255
    41266 1qiq:A (1.5) BS01 ACC 1.21.3.1 GO:0005506 ... P05326 10537113
    41267 1qiq:A (1.5) BS02 FE 1.21.3.1 GO:0005506 ... P05326 10537113
    41268 1qir:A (2.2) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 10708649
    41269 1qis:A (1.9) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 10708649
    41270 1qit:A (1.9) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 10708649
    41271 1qiv:A (2.64) BS01 CA ? GO:0000922 ... P62157 10731425
    41272 1qiv:A (2.64) BS02 CA ? GO:0000922 ... P62157 10731425
    41273 1qiv:A (2.64) BS03 CA ? GO:0000922 ... P62157 10731425
    41274 1qiv:A (2.64) BS04 CA ? GO:0000922 ... P62157 10731425
    41275 1qiv:A (2.64) BS05 DPD ? GO:0000922 ... P62157 10731425
    41276 1qiv:A (2.64) BS06 DPD ? GO:0000922 ... P62157 10731425
    41277 1qiw:A (2.3) BS01 CA ? GO:0000922 ... P62157 10731425
    41278 1qiw:A (2.3) BS02 CA ? GO:0000922 ... P62157 10731425
    41279 1qiw:A (2.3) BS03 CA ? GO:0000922 ... P62157 10731425
    41280 1qiw:A (2.3) BS04 CA ? GO:0000922 ... P62157 10731425
    41281 1qiw:A (2.3) BS05 DPD ? GO:0000922 ... P62157 10731425 MOAD: Kd=18nM
    41282 1qiw:A (2.3) BS06 DPD ? GO:0000922 ... P62157 10731425 MOAD: Kd=18nM
    41283 1qiw:B (2.3) BS01 CA ? GO:0000922 ... P62157 10731425
    41284 1qiw:B (2.3) BS02 CA ? GO:0000922 ... P62157 10731425
    41285 1qiw:B (2.3) BS03 CA ? GO:0000922 ... P62157 10731425
    41286 1qiw:B (2.3) BS04 CA ? GO:0000922 ... P62157 10731425
    41287 1qiw:B (2.3) BS05 DPD ? GO:0000922 ... P62157 10731425 MOAD: Kd=18nM
    41288 1qix:B (1.9) BS01 peptide 3.4.21.36 GO:0004252 ... P00772 9187653
    41289 1qix:B (1.9) BS02 CA 3.4.21.36 GO:0004252 ... P00772 9187653
    41290 1qiy:B (2.3) BS01 peptide ? GO:0005179 ... P01308 10508408
    41291 1qiy:B (2.3) BS02 peptide ? GO:0005179 ... P01308 10508408
    41292 1qiy:D (2.3) BS01 peptide ? GO:0005179 ... P01308 10508408
    41293 1qiy:D (2.3) BS02 peptide ? GO:0005179 ... P01308 10508408
    41294 1qiy:F (2.3) BS01 peptide ? GO:0005179 ... P01308 10508408
    41295 1qiy:F (2.3) BS02 peptide ? GO:0005179 ... P01308 10508408
    41296 1qiy:F (2.3) BS03 IPH ? GO:0005179 ... P01308 10508408
    41297 1qiy:H (2.3) BS01 peptide ? GO:0005179 ... P01308 10508408
    41298 1qiy:J (2.3) BS01 peptide ? GO:0005179 ... P01308 10508408
    41299 1qiy:J (2.3) BS02 peptide ? GO:0005179 ... P01308 10508408
    41300 1qiy:L (2.3) BS01 peptide ? GO:0005179 ... P01308 10508408
    41301 1qiy:L (2.3) BS02 peptide ? GO:0005179 ... P01308 10508408
    41302 1qiz:B (2.0) BS01 peptide ? GO:0005179 ... P01308 10508408
    41303 1qiz:B (2.0) BS02 peptide ? GO:0005179 ... P01308 10508408
    41304 1qiz:D (2.0) BS01 peptide ? GO:0005179 ... P01308 10508408
    41305 1qiz:D (2.0) BS02 peptide ? GO:0005179 ... P01308 10508408
    41306 1qiz:F (2.0) BS01 peptide ? GO:0005179 ... P01308 10508408
    41307 1qiz:F (2.0) BS02 peptide ? GO:0005179 ... P01308 10508408
    41308 1qiz:H (2.0) BS01 peptide ? GO:0005179 ... P01308 10508408
    41309 1qiz:H (2.0) BS02 peptide ? GO:0005179 ... P01308 10508408
    41310 1qiz:J (2.0) BS01 peptide ? GO:0005179 ... P01308 10508408
    41311 1qiz:J (2.0) BS02 peptide ? GO:0005179 ... P01308 10508408
    41312 1qiz:J (2.0) BS03 RCO ? GO:0005179 ... P01308 10508408
    41313 1qiz:L (2.0) BS01 peptide ? GO:0005179 ... P01308 10508408
    41314 1qiz:L (2.0) BS02 peptide ? GO:0005179 ... P01308 10508408
    41315 1qj0:D (2.4) BS01 peptide ? GO:0005179 ... P01308 10508408
    41316 1qj0:D (2.4) BS02 peptide ? GO:0005179 ... P01308 10508408
    41317 1qj1:B (2.0) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 10387040
    41318 1qj1:B (2.0) BS02 166 3.4.21.5 GO:0004252 ... P00734 10387040
    41319 1qj3:A (2.7) BS01 PLP 2.6.1.62 GO:0003824 ... P12995 10452893
    41320 1qj3:A (2.7) BS02 KAP 2.6.1.62 GO:0003824 ... P12995 10452893
    41321 1qj3:B (2.7) BS01 PLP 2.6.1.62 GO:0003824 ... P12995 10452893
    41322 1qj3:B (2.7) BS02 KAP 2.6.1.62 GO:0003824 ... P12995 10452893
    41323 1qj5:A (1.8) BS01 PLP 2.6.1.62 GO:0003824 ... P12995 10452893
    41324 1qj5:B (1.8) BS01 PLP 2.6.1.62 GO:0003824 ... P12995 10452893
    41325 1qj6:B (2.2) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 10387040
    41326 1qj6:B (2.2) BS02 167 3.4.21.5 GO:0004252 ... P00734 10387040
    41327 1qj7:B (2.2) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 10387040
    41328 1qj7:B (2.2) BS02 GR1 3.4.21.5 GO:0004252 ... P00734 10387040 PDBbind: -logKd/Ki=8.10, IC50=8nM
    41329 1qj8:A (1.9) BS01 C8E ? GO:0005515 ... P0A917 10545325
    41330 1qj8:A (1.9) BS02 PCL ? GO:0005515 ... P0A917 10545325
    41331 1qja:A (2.0) BS01 peptide ? GO:0000122 ... P63104 10488331
    41332 1qja:B (2.0) BS01 peptide ? GO:0000122 ... P63104 10488331
    41333 1qjb:A (2.0) BS01 peptide ? GO:0000122 ... P63104 10488331
    41334 1qjb:B (2.0) BS01 peptide ? GO:0000122 ... P63104 10488331
    41335 1qjc:B (1.63) BS01 PNS 2.7.7.3 GO:0003824 ... P0A6I6 11812124
    41336 1qjd:A (1.8) BS01 HEC 1.3.2.4 GO:0008202 ... Q07WU7 10581550
    41337 1qjd:A (1.8) BS02 HEC 1.3.2.4 GO:0008202 ... Q07WU7 10581550
    41338 1qjd:A (1.8) BS03 HEC 1.3.2.4 GO:0008202 ... Q07WU7 10581550
    41339 1qjd:A (1.8) BS04 HEC 1.3.2.4 GO:0008202 ... Q07WU7 10581550
    41340 1qjd:A (1.8) BS05 FAD 1.3.2.4 GO:0008202 ... Q07WU7 10581550
    41341 1qjd:A (1.8) BS06 TEO 1.3.2.4 GO:0008202 ... Q07WU7 10581550
    41342 1qje:A (1.35) BS01 IP1 1.21.3.1 GO:0005506 ... P05326 10537113
    41343 1qje:A (1.35) BS02 ACV 1.21.3.1 GO:0005506 ... P05326 10537113
    41344 1qje:A (1.35) BS03 FE2 1.21.3.1 GO:0005506 ... P05326 10537113
    41345 1qjf:A (1.4) BS01 ACS 1.21.3.1 GO:0005506 ... P05326 10537113
    41346 1qjf:A (1.4) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 10537113
    41347 1qjg:A (2.3) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 10551849
    41348 1qjg:B (2.3) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 10551849
    41349 1qjg:C (2.3) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 10551849
    41350 1qjg:D (2.3) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 10551849
    41351 1qjg:E (2.3) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 10551849
    41352 1qjg:F (2.3) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 10551849
    41353 1qji:A (2.14) BS01 ZN 3.4.24.21 GO:0004222 ... P07584 8756323
    41354 1qji:A (2.14) BS02 PKF 3.4.24.21 GO:0004222 ... P07584 8756323 MOAD: Ki=14uM
    PDBbind: -logKd/Ki=4.85, Ki=14uM
    41355 1qjj:A (1.86) BS01 peptide 3.4.24.21 GO:0004222 ... P07584 8756323
    41356 1qjj:A (1.86) BS02 ZN 3.4.24.21 GO:0004222 ... P07584 8756323
    41357 1qjm:A (3.4) BS01 SM 3.4.21.- GO:0001503 ... O77811 10531475
    41358 1qjm:A (3.4) BS02 SM 3.4.21.- GO:0001503 ... O77811 10531475
    41359 1qjm:A (3.4) BS03 CO3 3.4.21.- GO:0001503 ... O77811 10531475
    41360 1qjm:A (3.4) BS04 CO3 3.4.21.- GO:0001503 ... O77811 10531475
    41361 1qjp:A (1.65) BS01 C8E ? GO:0009279 ... P0A910 10764596
    41362 1qjp:A (1.65) BS02 C8E ? GO:0009279 ... P0A910 10764596
    41363 1qjp:A (1.65) BS03 C8E ? GO:0009279 ... P0A910 10764596
    41364 1qjp:A (1.65) BS04 C8E ? GO:0009279 ... P0A910 10764596
    41365 1qjp:A (1.65) BS05 C8E ? GO:0009279 ... P0A910 10764596
    41366 1qjp:A (1.65) BS06 C8E ? GO:0009279 ... P0A910 10764596
    41367 1qjq:A (2.95) BS01 PFC ? GO:0009279 ... P06971 10850805
    41368 1qjs:A (2.9) BS01 HEM ? GO:0006879 ... P20058 10504726
    41369 1qjs:B (2.9) BS01 HEM ? GO:0006879 ... P20058 10504726
    41370 1qju:1 (2.8) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... Q82122 10611281
    41371 1qju:1 (2.8) BS02 W01 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... Q82122 10611281
    41372 1qju:3 (2.8) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... Q82122 10611281
    41373 1qjw:A (1.9) BS01 MGL 3.2.1.91 GO:0004553 ... P07987 10508787
    41374 1qjw:A (1.9) BS02 SGC 3.2.1.91 GO:0004553 ... P07987 10508787
    41375 1qjw:A (1.9) BS03 GLC 3.2.1.91 GO:0004553 ... P07987 10508787
    41376 1qjw:A (1.9) BS04 GLC 3.2.1.91 GO:0004553 ... P07987 10508787
    41377 1qjw:A (1.9) BS05 MAN 3.2.1.91 GO:0004553 ... P07987 10508787
    41378 1qjw:A (1.9) BS06 MAN 3.2.1.91 GO:0004553 ... P07987 10508787
    41379 1qjw:A (1.9) BS07 MAN 3.2.1.91 GO:0004553 ... P07987 10508787
    41380 1qjw:A (1.9) BS08 MAN 3.2.1.91 GO:0004553 ... P07987 10508787
    41381 1qjw:A (1.9) BS09 MAN 3.2.1.91 GO:0004553 ... P07987 10508787
    41382 1qjw:B (1.9) BS01 MGL 3.2.1.91 GO:0004553 ... P07987 10508787
    41383 1qjw:B (1.9) BS02 SGC 3.2.1.91 GO:0004553 ... P07987 10508787
    41384 1qjw:B (1.9) BS03 GLC 3.2.1.91 GO:0004553 ... P07987 10508787
    41385 1qjw:B (1.9) BS04 GLC 3.2.1.91 GO:0004553 ... P07987 10508787
    41386 1qjw:B (1.9) BS05 MAN 3.2.1.91 GO:0004553 ... P07987 10508787
    41387 1qjw:B (1.9) BS06 MAN 3.2.1.91 GO:0004553 ... P07987 10508787
    41388 1qjw:B (1.9) BS07 MAN 3.2.1.91 GO:0004553 ... P07987 10508787
    41389 1qjw:B (1.9) BS08 MAN 3.2.1.91 GO:0004553 ... P07987 10508787
    41390 1qjw:B (1.9) BS09 MAN 3.2.1.91 GO:0004553 ... P07987 10508787
    41391 1qjw:B (1.9) BS10 MAN 3.2.1.91 GO:0004553 ... P07987 10508787
    41392 1qjx:1 (2.8) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... Q82122 10611281
    41393 1qjx:1 (2.8) BS02 W02 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... Q82122 10611281
    41394 1qjx:3 (2.8) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... Q82122 10611281
    41395 1qjy:1 (2.8) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... Q82122 10611281
    41396 1qjy:1 (2.8) BS02 W03 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... Q82122 10611281
    41397 1qjy:3 (2.8) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... Q82122 10611281
    41398 1qk0:A (2.1) BS01 XYP 3.2.1.91 GO:0004553 ... P07987 10508787
    41399 1qk0:A (2.1) BS02 BGC 3.2.1.91 GO:0004553 ... P07987 10508787
    41400 1qk0:A (2.1) BS03 MAN 3.2.1.91 GO:0004553 ... P07987 10508787

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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