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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    41001 1qgs:A (2.0) BS01 UDP ? GO:0016757 ... P39621 10350455
    41002 1qgu:A (1.6) BS01 CFM 1.18.6.1 GO:0005524 ... P00466 10525412
    41003 1qgu:A (1.6) BS02 CLF 1.18.6.1 GO:0005524 ... P00466 10525412
    41004 1qgu:B (1.6) BS01 CLF 1.18.6.1 GO:0005524 ... P09772 10525412
    41005 1qgu:B (1.6) BS02 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    41006 1qgu:B (1.6) BS03 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    41007 1qgu:C (1.6) BS01 CFM 1.18.6.1 GO:0005524 ... P00466 10525412
    41008 1qgu:C (1.6) BS02 CLF 1.18.6.1 GO:0005524 ... P00466 10525412
    41009 1qgu:D (1.6) BS01 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    41010 1qgu:D (1.6) BS02 CLF 1.18.6.1 GO:0005524 ... P09772 10525412
    41011 1qgu:D (1.6) BS03 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    41012 1qgw:A (1.63) BS01 DBV ? GO:0030089 ... Q00433 10430868
    41013 1qgw:A (1.63) BS02 DBV ? GO:0030089 ... Q00433 10430868
    41014 1qgw:A (1.63) BS03 PEB ? GO:0030089 ... Q00433 10430868
    41015 1qgw:A (1.63) BS04 PEB ? GO:0030089 ... Q00433 10430868
    41016 1qgw:A (1.63) BS05 PEB ? GO:0030089 ... Q00433 10430868
    41017 1qgw:B (1.63) BS01 DBV ? GO:0030089 ... P30943 10430868
    41018 1qgw:B (1.63) BS02 DBV ? GO:0030089 ... P30943 10430868
    41019 1qgw:B (1.63) BS03 PEB ? GO:0030089 ... P30943 10430868
    41020 1qgw:B (1.63) BS04 PEB ? GO:0030089 ... P30943 10430868
    41021 1qgw:C (1.63) BS01 PEB ? GO:0009507 ... P27198 10430868
    41022 1qgw:C (1.63) BS02 PEB ? GO:0009507 ... P27198 10430868
    41023 1qgw:C (1.63) BS03 PEB ? GO:0009507 ... P27198 10430868
    41024 1qgw:D (1.63) BS01 DBV ? GO:0009507 ... P27198 10430868
    41025 1qgw:D (1.63) BS02 PEB ? GO:0009507 ... P27198 10430868
    41026 1qgw:D (1.63) BS03 PEB ? GO:0009507 ... P27198 10430868
    41027 1qgw:D (1.63) BS04 PEB ? GO:0009507 ... P27198 10430868
    41028 1qgx:A (1.6) BS01 MG 3.1.3.7 GO:0000103 ... P32179 10656801
    41029 1qgx:A (1.6) BS02 PO4 3.1.3.7 GO:0000103 ... P32179 10656801
    41030 1qgx:A (1.6) BS03 AMP 3.1.3.7 GO:0000103 ... P32179 10656801
    41031 1qgy:A (1.7) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 15789405
    41032 1qgz:A (2.3) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 11342548
    41033 1qh0:A (1.93) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 11342548
    41034 1qh1:A (1.6) BS01 CFM 1.18.6.1 GO:0005524 ... P00466 10525412
    41035 1qh1:A (1.6) BS02 CLF 1.18.6.1 GO:0005524 ... P00466 10525412
    41036 1qh1:B (1.6) BS01 CLF 1.18.6.1 GO:0005524 ... P09772 10525412
    41037 1qh1:B (1.6) BS02 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    41038 1qh1:B (1.6) BS03 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    41039 1qh1:C (1.6) BS01 CFM 1.18.6.1 GO:0005524 ... P00466 10525412
    41040 1qh1:C (1.6) BS02 CLF 1.18.6.1 GO:0005524 ... P00466 10525412
    41041 1qh1:D (1.6) BS01 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    41042 1qh1:D (1.6) BS02 CLF 1.18.6.1 GO:0005524 ... P09772 10525412
    41043 1qh1:D (1.6) BS03 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    41044 1qh3:A (1.9) BS01 ZN 3.1.2.6 GO:0004416 ... Q16775 10508780
    41045 1qh3:A (1.9) BS02 ZN 3.1.2.6 GO:0004416 ... Q16775 10508780
    41046 1qh3:A (1.9) BS03 CAC 3.1.2.6 GO:0004416 ... Q16775 10508780
    41047 1qh3:A (1.9) BS04 ACT 3.1.2.6 GO:0004416 ... Q16775 10508780
    41048 1qh3:A (1.9) BS05 MN 3.1.2.6 GO:0004416 ... Q16775 10508780
    41049 1qh3:B (1.9) BS01 ZN 3.1.2.6 GO:0004416 ... Q16775 10508780
    41050 1qh3:B (1.9) BS02 ZN 3.1.2.6 GO:0004416 ... Q16775 10508780
    41051 1qh3:B (1.9) BS03 CAC 3.1.2.6 GO:0004416 ... Q16775 10508780
    41052 1qh3:B (1.9) BS04 ACT 3.1.2.6 GO:0004416 ... Q16775 10508780
    41053 1qh3:B (1.9) BS05 CAC 3.1.2.6 GO:0004416 ... Q16775 10508780
    41054 1qh3:B (1.9) BS06 MN 3.1.2.6 GO:0004416 ... Q16775 10508780
    41055 1qh4:D (1.41) BS01 CA 2.7.3.2 GO:0003824 ... P05122 10595529
    41056 1qh5:A (1.45) BS01 ZN 3.1.2.6 GO:0004416 ... Q16775 10508780
    41057 1qh5:A (1.45) BS02 ZN 3.1.2.6 GO:0004416 ... Q16775 10508780
    41058 1qh5:A (1.45) BS03 GSH 3.1.2.6 GO:0004416 ... Q16775 10508780
    41059 1qh5:B (1.45) BS01 ZN 3.1.2.6 GO:0004416 ... Q16775 10508780
    41060 1qh5:B (1.45) BS02 ZN 3.1.2.6 GO:0004416 ... Q16775 10508780
    41061 1qh5:B (1.45) BS03 GBP 3.1.2.6 GO:0004416 ... Q16775 10508780
    41062 1qh6:A (2.0) BS01 X2F 3.2.1.8 GO:0004553 ... Q7SIE3 10381409
    41063 1qh6:A (2.0) BS02 XYP 3.2.1.8 GO:0004553 ... Q7SIE3 10381409
    41064 1qh6:B (2.0) BS01 X2F 3.2.1.8 GO:0004553 ... Q7SIE3 10381409
    41065 1qh6:B (2.0) BS02 XYP 3.2.1.8 GO:0004553 ... Q7SIE3 10381409
    41066 1qh7:A (1.78) BS01 XYP 3.2.1.8 GO:0004553 ... Q7SIE3 10381409
    41067 1qh7:B (1.78) BS01 XYP 3.2.1.8 GO:0004553 ... Q7SIE3 10381409
    41068 1qh8:A (1.6) BS01 CFM 1.18.6.1 GO:0005524 ... P00466 10525412
    41069 1qh8:A (1.6) BS02 CLF 1.18.6.1 GO:0005524 ... P00466 10525412
    41070 1qh8:B (1.6) BS01 CLF 1.18.6.1 GO:0005524 ... P09772 10525412
    41071 1qh8:B (1.6) BS02 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    41072 1qh8:B (1.6) BS03 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    41073 1qh8:C (1.6) BS01 CFM 1.18.6.1 GO:0005524 ... P00466 10525412
    41074 1qh8:C (1.6) BS02 CLF 1.18.6.1 GO:0005524 ... P00466 10525412
    41075 1qh8:D (1.6) BS01 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    41076 1qh8:D (1.6) BS02 CLF 1.18.6.1 GO:0005524 ... P09772 10525412
    41077 1qh8:D (1.6) BS03 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    41078 1qha:A (2.25) BS01 GLC 2.7.1.1 GO:0001678 ... P19367 10574795
    41079 1qha:A (2.25) BS02 G6P 2.7.1.1 GO:0001678 ... P19367 10574795
    41080 1qha:A (2.25) BS03 GLC 2.7.1.1 GO:0001678 ... P19367 10574795
    41081 1qha:A (2.25) BS04 G6P 2.7.1.1 GO:0001678 ... P19367 10574795
    41082 1qha:A (2.25) BS05 MG 2.7.1.1 GO:0001678 ... P19367 10574795
    41083 1qha:A (2.25) BS06 MG 2.7.1.1 GO:0001678 ... P19367 10574795
    41084 1qha:A (2.25) BS07 ANP 2.7.1.1 GO:0001678 ... P19367 10574795
    41085 1qha:B (2.25) BS01 GLC 2.7.1.1 GO:0001678 ... P19367 10574795
    41086 1qha:B (2.25) BS02 G6P 2.7.1.1 GO:0001678 ... P19367 10574795
    41087 1qha:B (2.25) BS03 GLC 2.7.1.1 GO:0001678 ... P19367 10574795
    41088 1qha:B (2.25) BS04 G6P 2.7.1.1 GO:0001678 ... P19367 10574795
    41089 1qha:B (2.25) BS05 MG 2.7.1.1 GO:0001678 ... P19367 10574795
    41090 1qha:B (2.25) BS06 MG 2.7.1.1 GO:0001678 ... P19367 10574795
    41091 1qha:B (2.25) BS07 ANP 2.7.1.1 GO:0001678 ... P19367 10574795
    41092 1qhb:A (2.3) BS01 CA 1.11.1.18 GO:0004601 ... Q8LLW7 10843856
    41093 1qhb:B (2.3) BS01 CA 1.11.1.18 GO:0004601 ... Q8LLW7 10843856
    41094 1qhb:C (2.3) BS01 CA 1.11.1.18 GO:0004601 ... Q8LLW7 10843856
    41095 1qhb:D (2.3) BS01 CA 1.11.1.18 GO:0004601 ... Q8LLW7 10843856
    41096 1qhb:E (2.3) BS01 CA 1.11.1.18 GO:0004601 ... Q8LLW7 10843856
    41097 1qhb:F (2.3) BS01 CA 1.11.1.18 GO:0004601 ... Q8LLW7 10843856
    41098 1qhc:A (1.7) BS01 PUA 4.6.1.18 GO:0003676 ... P61823 10441122 MOAD: Ki=27nM
    PDBbind: -logKd/Ki=7.57, Ki=27nM
    41099 1qhc:B (1.7) BS01 PUA 4.6.1.18 GO:0003676 ... P61823 10441122 MOAD: Ki=27nM
    41100 1qhd:A (1.95) BS01 CA ? GO:0005198 ... P04509 11285213
    41101 1qhd:A (1.95) BS02 CA ? GO:0005198 ... P04509 11285213
    41102 1qhf:A (1.7) BS01 3PG 5.4.2.11 GO:0003824 ... P00950 10531478
    41103 1qhf:B (1.7) BS01 3PG 5.4.2.11 GO:0003824 ... P00950 10531478
    41104 1qhg:A (2.5) BS01 ATP 5.6.2.4 GO:0000725 ... P56255 10388562
    41105 1qhh:A (2.5) BS01 ATP 5.6.2.4 GO:0003677 ... P56255 10388562
    41106 1qhh:D (2.5) BS01 ATP 5.6.2.4 GO:0003677 ... P56255 10388562
    41107 1qhi:A (1.9) BS01 BPG 2.7.1.21 GO:0004797 ... P0DTH5 9989588
    41108 1qhi:B (1.9) BS01 BPG 2.7.1.21 GO:0004797 ... P0DTH5 9989588
    41109 1qhj:A (1.9) BS01 RET ? GO:0005216 ... P02945 10467143
    41110 1qhj:A (1.9) BS02 PH1 ? GO:0005216 ... P02945 10467143
    41111 1qhj:A (1.9) BS03 PH1 ? GO:0005216 ... P02945 10467143
    41112 1qhj:A (1.9) BS04 PH1 ? GO:0005216 ... P02945 10467143
    41113 1qhj:A (1.9) BS05 PH1 ? GO:0005216 ... P02945 10467143
    41114 1qhj:A (1.9) BS06 PH1 ? GO:0005216 ... P02945 10467143
    41115 1qhj:A (1.9) BS07 PH1 ? GO:0005216 ... P02945 10467143
    41116 1qhn:A (2.7) BS01 SO4 2.7.1.- GO:0005524 ... Q56148 10835366
    41117 1qho:A (1.7) BS01 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    41118 1qho:A (1.7) BS02 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    41119 1qho:A (1.7) BS03 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    41120 1qho:A (1.7) BS04 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    41121 1qho:A (1.7) BS05 BGC 3.2.1.133 GO:0003824 ... P19531 10387084
    41122 1qho:A (1.7) BS06 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    41123 1qho:A (1.7) BS07 AGL 3.2.1.133 GO:0003824 ... P19531 10387084
    41124 1qho:A (1.7) BS08 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    41125 1qho:A (1.7) BS09 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    41126 1qho:A (1.7) BS10 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    41127 1qho:A (1.7) BS11 CA 3.2.1.133 GO:0003824 ... P19531 10387084
    41128 1qho:A (1.7) BS12 CA 3.2.1.133 GO:0003824 ... P19531 10387084
    41129 1qho:A (1.7) BS13 CA 3.2.1.133 GO:0003824 ... P19531 10387084
    41130 1qhp:A (1.7) BS01 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    41131 1qhp:A (1.7) BS02 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    41132 1qhp:A (1.7) BS03 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    41133 1qhp:A (1.7) BS04 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    41134 1qhp:A (1.7) BS05 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    41135 1qhp:A (1.7) BS06 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    41136 1qhp:A (1.7) BS07 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    41137 1qhp:A (1.7) BS08 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    41138 1qhp:A (1.7) BS09 CA 3.2.1.133 GO:0003824 ... P19531 10387084
    41139 1qhp:A (1.7) BS10 CA 3.2.1.133 GO:0003824 ... P19531 10387084
    41140 1qhp:A (1.7) BS11 CA 3.2.1.133 GO:0003824 ... P19531 10387084
    41141 1qhq:A (1.55) BS01 CU ? GO:0005507 ... P27197 11178893
    41142 1qhr:B (2.2) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 10387040
    41143 1qhr:B (2.2) BS02 157 3.4.21.5 GO:0004252 ... P00734 10387040 PDBbind: -logKd/Ki=6.89, IC50=130nM
    BindingDB: IC50=130nM
    41144 1qhs:A (2.8) BS01 SO4 2.7.1.- GO:0005524 ... Q56148 10835366
    41145 1qhs:A (2.8) BS02 CLM 2.7.1.- GO:0005524 ... Q56148 10835366
    41146 1qhs:A (2.8) BS03 CLM 2.7.1.- GO:0005524 ... Q56148 10835366
    41147 1qhu:A (2.3) BS01 HEM ? GO:0006879 ... P20058 10504726
    41148 1qhw:A (2.2) BS01 FE 3.1.3.2 GO:0003993 ... P29288 10438611
    41149 1qhw:A (2.2) BS02 FE 3.1.3.2 GO:0003993 ... P29288 10438611
    41150 1qhx:A (2.5) BS01 ATP 2.7.1.- GO:0005524 ... Q56148 10835366
    41151 1qhy:A (2.6) BS01 MG 2.7.1.- GO:0005524 ... Q56148 10835366
    41152 1qhy:A (2.6) BS02 AGS 2.7.1.- GO:0005524 ... Q56148 10835366
    41153 1qhy:A (2.6) BS03 CLM 2.7.1.- GO:0005524 ... Q56148 10835366
    41154 1qhy:A (2.6) BS04 CLM 2.7.1.- GO:0005524 ... Q56148 10835366
    41155 1qhz:A (1.95) BS01 CA 3.2.1.4 GO:0000272 ... O85465 10731432
    41156 1qhz:A (1.95) BS02 CA 3.2.1.4 GO:0000272 ... O85465 10731432
    41157 1qhz:A (1.95) BS03 CA 3.2.1.4 GO:0000272 ... O85465 10731432
    41158 1qi0:A (2.1) BS01 BGC 3.2.1.4 GO:0000272 ... O85465 10731432
    41159 1qi0:A (2.1) BS02 BGC 3.2.1.4 GO:0000272 ... O85465 10731432
    41160 1qi0:A (2.1) BS03 CA 3.2.1.4 GO:0000272 ... O85465 10731432
    41161 1qi0:A (2.1) BS04 CA 3.2.1.4 GO:0000272 ... O85465 10731432
    41162 1qi0:A (2.1) BS05 CA 3.2.1.4 GO:0000272 ... O85465 10731432
    41163 1qi1:A (3.0) BS01 NAP 1.2.1.9 GO:0008886 ... Q59931 10864505
    41164 1qi1:A (3.0) BS02 G3H 1.2.1.9 GO:0008886 ... Q59931 10864505
    41165 1qi1:B (3.0) BS01 NAP 1.2.1.9 GO:0008886 ... Q59931 10864505
    41166 1qi1:B (3.0) BS02 G3P 1.2.1.9 GO:0008886 ... Q59931 10864505
    41167 1qi1:C (3.0) BS01 NAP 1.2.1.9 GO:0008886 ... Q59931 10864505
    41168 1qi1:C (3.0) BS02 G3H 1.2.1.9 GO:0008886 ... Q59931 10864505
    41169 1qi1:D (3.0) BS01 NAP 1.2.1.9 GO:0008886 ... Q59931 10864505
    41170 1qi1:D (3.0) BS02 G3H 1.2.1.9 GO:0008886 ... Q59931 10864505
    41171 1qi2:A (1.75) BS01 G2F 3.2.1.4 GO:0000272 ... O85465 10731432
    41172 1qi2:A (1.75) BS02 BGC 3.2.1.4 GO:0000272 ... O85465 10731432
    41173 1qi2:A (1.75) BS03 BGC 3.2.1.4 GO:0000272 ... O85465 10731432
    41174 1qi2:A (1.75) BS04 CA 3.2.1.4 GO:0000272 ... O85465 10731432
    41175 1qi2:A (1.75) BS05 CA 3.2.1.4 GO:0000272 ... O85465 10731432
    41176 1qi3:A (2.0) BS01 GLC 3.2.1.60 GO:0005975 ... P13507 10556241
    41177 1qi3:A (2.0) BS02 GLC 3.2.1.60 GO:0005975 ... P13507 10556241
    41178 1qi3:A (2.0) BS03 GLC 3.2.1.60 GO:0005975 ... P13507 10556241
    41179 1qi3:A (2.0) BS04 GLC 3.2.1.60 GO:0005975 ... P13507 10556241
    41180 1qi3:A (2.0) BS05 CA 3.2.1.60 GO:0005975 ... P13507 10556241
    41181 1qi3:A (2.0) BS06 CA 3.2.1.60 GO:0005975 ... P13507 10556241
    41182 1qi4:A (2.0) BS01 GLC 3.2.1.60 GO:0004556 ... P13507 10556241
    41183 1qi4:A (2.0) BS02 GLC 3.2.1.60 GO:0004556 ... P13507 10556241
    41184 1qi4:A (2.0) BS03 GLC 3.2.1.60 GO:0004556 ... P13507 10556241
    41185 1qi4:A (2.0) BS04 GLC 3.2.1.60 GO:0004556 ... P13507 10556241
    41186 1qi4:A (2.0) BS05 CA 3.2.1.60 GO:0004556 ... P13507 10556241
    41187 1qi4:A (2.0) BS06 CA 3.2.1.60 GO:0004556 ... P13507 10556241
    41188 1qi5:A (2.0) BS01 GLC 3.2.1.60 GO:0005975 ... P13507 10556241
    41189 1qi5:A (2.0) BS02 GLC 3.2.1.60 GO:0005975 ... P13507 10556241
    41190 1qi5:A (2.0) BS03 GLC 3.2.1.60 GO:0005975 ... P13507 10556241
    41191 1qi5:A (2.0) BS04 GLC 3.2.1.60 GO:0005975 ... P13507 10556241
    41192 1qi5:A (2.0) BS05 CA 3.2.1.60 GO:0005975 ... P13507 10556241
    41193 1qi5:A (2.0) BS06 CA 3.2.1.60 GO:0005975 ... P13507 10556241
    41194 1qi8:A (1.8) BS01 HEM ? GO:0004601 ... P69905 10390349
    41195 1qi8:B (1.8) BS01 HEM ? GO:0004601 ... P68871 10390349
    41196 1qi8:C (1.8) BS01 HEM ? GO:0004601 ... P69905 10390349
    41197 1qi8:D (1.8) BS01 HEM ? GO:0004601 ... P68871 10390349
    41198 1qia:A (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    41199 1qia:A (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    41200 1qia:A (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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