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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    18201 1heu:B (1.15) BS01 NAD 1.1.1.1 GO:0004022 ... P00327 11134046
    18202 1hex:A (2.5) BS01 NAD 1.1.1.85 GO:0000287 ... Q5SIY4 7881901 MOAD: Ki=614.6uM
    18203 1hf0:A (2.7) BS01 dna ? GO:0000981 ... P14859 11583619
    18204 1hf0:A (2.7) BS02 dna ? GO:0000981 ... P14859 11583619
    18205 1hf0:B (2.7) BS01 dna ? GO:0000981 ... P14859 11583619
    18206 1hf0:B (2.7) BS02 dna ? GO:0000981 ... P14859 11583619
    18207 1hf3:A (1.95) BS01 NAD 1.1.1.1 GO:0004022 ... P00327 11134046
    18208 1hf3:B (1.95) BS01 NAD 1.1.1.1 GO:0004022 ... P00327 11134046
    18209 1hf4:A (1.45) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 11418760
    18210 1hf4:A (1.45) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 11418760
    18211 1hf4:A (1.45) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 11418760
    18212 1hf4:B (1.45) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 11418760
    18213 1hf4:B (1.45) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 11418760
    18214 1hf4:B (1.45) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 11418760
    18215 1hf4:B (1.45) BS04 NO3 3.2.1.17 GO:0003796 ... P00698 11418760
    18216 1hf6:A (1.15) BS01 GLC 3.2.1.4 GO:0000272 ... O85465 12595701
    18217 1hf6:A (1.15) BS02 BGC 3.2.1.4 GO:0000272 ... O85465 12595701
    18218 1hf6:A (1.15) BS03 BGC 3.2.1.4 GO:0000272 ... O85465 12595701
    18219 1hfa:A (2.0) BS01 PIO ? GO:0005543 ... O55012 11161218
    18220 1hfb:A (1.9) BS01 PEP 2.5.1.54 GO:0003849 ... P32449 12540830
    18221 1hfb:B (1.9) BS01 PEP 2.5.1.54 GO:0003849 ... P32449 12540830
    18222 1hfb:C (1.9) BS01 PEP 2.5.1.54 GO:0003849 ... P32449 12540830
    18223 1hfb:D (1.9) BS01 PEP 2.5.1.54 GO:0003849 ... P32449 12540830
    18224 1hfb:E (1.9) BS01 PEP 2.5.1.54 GO:0003849 ... P32449 12540830
    18225 1hfb:F (1.9) BS01 PEP 2.5.1.54 GO:0003849 ... P32449 12540830
    18226 1hfb:G (1.9) BS01 PEP 2.5.1.54 GO:0003849 ... P32449 12540830
    18227 1hfb:H (1.9) BS01 PEP 2.5.1.54 GO:0003849 ... P32449 12540830
    18228 1hfc:A (1.5) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 8090713
    18229 1hfc:A (1.5) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 8090713
    18230 1hfc:A (1.5) BS03 CA 3.4.24.7 GO:0004222 ... P03956 8090713
    18231 1hfc:A (1.5) BS04 PLH 3.4.24.7 GO:0004222 ... P03956 8090713
    18232 1hfe:L (1.6) BS01 SF4 1.12.7.2 GO:0005506 ... P07598 10368269
    18233 1hfe:L (1.6) BS02 SF4 1.12.7.2 GO:0005506 ... P07598 10368269
    18234 1hfe:L (1.6) BS03 SF4 1.12.7.2 GO:0005506 ... P07598 10368269
    18235 1hfe:L (1.6) BS04 PDT 1.12.7.2 GO:0005506 ... P07598 10368269
    18236 1hfe:L (1.6) BS05 CYS 1.12.7.2 GO:0005506 ... P07598 10368269
    18237 1hfe:M (1.6) BS01 SF4 1.12.7.2 GO:0005506 ... P07598 10368269
    18238 1hfe:M (1.6) BS02 SF4 1.12.7.2 GO:0005506 ... P07598 10368269
    18239 1hfe:M (1.6) BS03 SF4 1.12.7.2 GO:0005506 ... P07598 10368269
    18240 1hfe:M (1.6) BS04 PDT 1.12.7.2 GO:0005506 ... P07598 10368269
    18241 1hfe:M (1.6) BS05 CYS 1.12.7.2 GO:0005506 ... P07598 10368269
    18242 1hfe:S (1.6) BS01 ZN 1.12.7.2 GO:0005506 ... P07603 10368269
    18243 1hfe:T (1.6) BS01 ZN 1.12.7.2 GO:0005506 ... P07603 10368269
    18244 1hfp:A (2.1) BS01 NDP 1.5.1.3 GO:0000900 ... P00374 9627670
    18245 1hfp:A (2.1) BS02 MOT 1.5.1.3 GO:0000900 ... P00374 9627670 MOAD: Ki=1036nM
    18246 1hfq:A (2.1) BS01 NDP 1.5.1.3 GO:0000900 ... P00374 9627670
    18247 1hfq:A (2.1) BS02 MOT 1.5.1.3 GO:0000900 ... P00374 9627670 MOAD: Ki=2.7nM
    18248 1hfr:A (2.1) BS01 NDP 1.5.1.3 GO:0000900 ... P00374 9627670
    18249 1hfr:A (2.1) BS02 MOT 1.5.1.3 GO:0000900 ... P00374 9627670 MOAD: Ki=790nM
    18250 1hfs:A (1.7) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 9083493
    18251 1hfs:A (1.7) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 9083493
    18252 1hfs:A (1.7) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9083493
    18253 1hfs:A (1.7) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9083493
    18254 1hfs:A (1.7) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9083493
    18255 1hfs:A (1.7) BS06 L04 3.4.24.17 GO:0004222 ... P08254 9083493 MOAD: Ki=2nM
    PDBbind: -logKd/Ki=8.70, Ki=2nM
    BindingDB: Ki=2nM
    18256 1hfu:A (1.68) BS01 MAN 1.10.3.2 GO:0005507 ... Q9Y780 11173497
    18257 1hfu:A (1.68) BS02 CU 1.10.3.2 GO:0005507 ... Q9Y780 11173497
    18258 1hfu:A (1.68) BS03 CU 1.10.3.2 GO:0005507 ... Q9Y780 11173497
    18259 1hfu:A (1.68) BS04 CU 1.10.3.2 GO:0005507 ... Q9Y780 11173497
    18260 1hfw:A (1.8) BS01 GLU 3.5.1.1 GO:0004067 ... P06608 11341830
    18261 1hfw:B (1.8) BS01 GLU 3.5.1.1 GO:0004067 ... P06608 11341830
    18262 1hfw:C (1.8) BS01 GLU 3.5.1.1 GO:0004067 ... P06608 11341830
    18263 1hfw:D (1.8) BS01 GLU 3.5.1.1 GO:0004067 ... P06608 11341830
    18264 1hfx:A (1.9) BS01 CA 2.4.1.22 GO:0003796 ... P00713 8805552
    18265 1hfy:A (2.3) BS01 CA 2.4.1.22 GO:0003796 ... P00712 8805552
    18266 1hfy:B (2.3) BS01 CA 2.4.1.22 GO:0003796 ... P00712 8805552
    18267 1hfz:A (2.3) BS01 CA 2.4.1.22 GO:0003796 ... P00711 8805552
    18268 1hfz:B (2.3) BS01 CA 2.4.1.22 GO:0003796 ... P00711 8805552
    18269 1hfz:C (2.3) BS01 CA 2.4.1.22 GO:0003796 ... P00711 8805552
    18270 1hfz:D (2.3) BS01 CA 2.4.1.22 GO:0003796 ... P00711 8805552
    18271 1hg0:A (1.9) BS01 SIN 3.5.1.1 GO:0004067 ... P06608 11341830
    18272 1hg0:B (1.9) BS01 SIN 3.5.1.1 GO:0004067 ... P06608 11341830
    18273 1hg0:C (1.9) BS01 SIN 3.5.1.1 GO:0004067 ... P06608 11341830
    18274 1hg0:D (1.9) BS01 SIN 3.5.1.1 GO:0004067 ... P06608 11341830
    18275 1hg1:A (1.8) BS01 DAS 3.5.1.1 GO:0004067 ... P06608 11341830
    18276 1hg1:B (1.8) BS01 DAS 3.5.1.1 GO:0004067 ... P06608 11341830
    18277 1hg1:C (1.8) BS01 DAS 3.5.1.1 GO:0004067 ... P06608 11341830
    18278 1hg1:D (1.8) BS01 DAS 3.5.1.1 GO:0004067 ... P06608 11341830
    18279 1hg2:A (2.0) BS01 IP2 ? GO:0005543 ... O55012 11161218
    18280 1hg3:A (2.7) BS01 3PP 5.3.1.1 GO:0004807 ... P62003 11243785
    18281 1hg3:B (2.7) BS01 3PP 5.3.1.1 GO:0004807 ... P62003 11243785
    18282 1hg3:C (2.7) BS01 3PP 5.3.1.1 GO:0004807 ... P62003 11243785
    18283 1hg3:D (2.7) BS01 3PP 5.3.1.1 GO:0004807 ... P62003 11243785
    18284 1hg3:E (2.7) BS01 3PP 5.3.1.1 GO:0004807 ... P62003 11243785
    18285 1hg3:F (2.7) BS01 3PP 5.3.1.1 GO:0004807 ... P62003 11243785
    18286 1hg3:G (2.7) BS01 3PP 5.3.1.1 GO:0004807 ... P62003 11243785
    18287 1hg3:H (2.7) BS01 3PP 5.3.1.1 GO:0004807 ... P62003 11243785
    18288 1hg5:A (2.0) BS01 IHP ? GO:0005543 ... O55012 11161218
    18289 1hga:A (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    18290 1hga:B (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    18291 1hga:C (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    18292 1hga:D (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    18293 1hgb:A (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    18294 1hgb:B (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    18295 1hgb:C (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    18296 1hgb:D (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    18297 1hgc:A (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    18298 1hgc:A (2.1) BS02 OXY ? GO:0004601 ... P69905 1453464
    18299 1hgc:B (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    18300 1hgc:C (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    18301 1hgc:C (2.1) BS02 OXY ? GO:0004601 ... P69905 1453464
    18302 1hgc:D (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    18303 1hge:A (2.6) BS01 MNA ? GO:0019031 ... P03438 1327122 PDBbind: -logKd/Ki=2.27, Kd=5.4mM
    18304 1hge:C (2.6) BS01 MNA ? GO:0019031 ... P03438 1327122
    18305 1hge:E (2.6) BS01 MNA ? GO:0019031 ... P03438 1327122
    18306 1hgg:A (2.9) BS01 GAL ? GO:0019031 ... P03437 1327122
    18307 1hgg:A (2.9) BS02 SIA ? GO:0019031 ... P03437 1327122
    18308 1hgg:A (2.9) BS03 BGC ? GO:0019031 ... P03437 1327122
    18309 1hgg:A (2.9) BS04 SIA ? GO:0019031 ... P03437 1327122
    18310 1hgg:B (2.9) BS01 SIA ? GO:0019031 ... P03437 1327122
    18311 1hgg:C (2.9) BS01 GAL ? GO:0019031 ... P03437 1327122
    18312 1hgg:C (2.9) BS02 SIA ? GO:0019031 ... P03437 1327122
    18313 1hgg:C (2.9) BS03 BGC ? GO:0019031 ... P03437 1327122
    18314 1hgg:C (2.9) BS04 SIA ? GO:0019031 ... P03437 1327122
    18315 1hgg:D (2.9) BS01 SIA ? GO:0019031 ... P03437 1327122
    18316 1hgg:E (2.9) BS01 GAL ? GO:0019031 ... P03437 1327122
    18317 1hgg:E (2.9) BS02 SIA ? GO:0019031 ... P03437 1327122
    18318 1hgg:E (2.9) BS03 BGC ? GO:0019031 ... P03437 1327122
    18319 1hgg:E (2.9) BS04 SIA ? GO:0019031 ... P03437 1327122
    18320 1hgg:F (2.9) BS01 SIA ? GO:0019031 ... P03437 1327122
    18321 1hgh:A (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    18322 1hgh:A (2.7) BS02 MNA ? GO:0019031 ... P03438 1327122
    18323 1hgh:B (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    18324 1hgh:C (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    18325 1hgh:C (2.7) BS02 MNA ? GO:0019031 ... P03438 1327122
    18326 1hgh:D (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    18327 1hgh:E (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    18328 1hgh:E (2.7) BS02 MNA ? GO:0019031 ... P03438 1327122
    18329 1hgh:F (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    18330 1hgi:A (2.7) BS01 ANA ? GO:0019031 ... P03438 1327122 PDBbind: -logKd/Ki=2.68, Kd=2.1mM
    18331 1hgi:C (2.7) BS01 ANA ? GO:0019031 ... P03438 1327122
    18332 1hgi:E (2.7) BS01 ANA ? GO:0019031 ... P03438 1327122
    18333 1hgj:A (2.7) BS01 AMN ? GO:0019031 ... P03438 1327122 PDBbind: -logKd/Ki=1.66, Kd=22mM
    18334 1hgj:C (2.7) BS01 AMN ? GO:0019031 ... P03438 1327122
    18335 1hgj:E (2.7) BS01 AMN ? GO:0019031 ... P03438 1327122
    18336 1hgt:H (2.2) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 1942057
    18337 1hgw:A (2.1) BS01 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18338 1hgw:A (2.1) BS02 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18339 1hgw:A (2.1) BS03 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18340 1hgw:A (2.1) BS04 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18341 1hgw:A (2.1) BS05 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18342 1hgw:A (2.1) BS06 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18343 1hgw:B (2.1) BS01 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18344 1hgw:B (2.1) BS02 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18345 1hgw:B (2.1) BS03 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18346 1hgw:B (2.1) BS04 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18347 1hgw:B (2.1) BS05 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18348 1hgw:B (2.1) BS06 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18349 1hgx:A (1.9) BS01 5GP 2.4.2.22
    2.4.2.8    		 GO:0000166 ... P51900 8679528
    18350 1hgy:A (2.2) BS01 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18351 1hgy:A (2.2) BS02 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18352 1hgy:A (2.2) BS03 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18353 1hgy:A (2.2) BS04 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18354 1hgy:A (2.2) BS05 GLC 3.2.1.91 GO:0004553 ... P07987 12188666
    18355 1hgy:B (2.2) BS01 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18356 1hgy:B (2.2) BS02 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18357 1hgy:B (2.2) BS03 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18358 1hgy:B (2.2) BS04 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18359 1hh4:A (2.7) BS01 GDP 3.6.5.2 GO:0001764 ... P63000 11513578
    18360 1hh4:A (2.7) BS02 MG 3.6.5.2 GO:0001764 ... P63000 11513578
    18361 1hh4:B (2.7) BS01 GDP 3.6.5.2 GO:0001764 ... P63000 11513578
    18362 1hh4:B (2.7) BS02 MG 3.6.5.2 GO:0001764 ... P63000 11513578
    18363 1hh4:B (2.7) BS03 GER 3.6.5.2 GO:0001764 ... P63000 11513578
    18364 1hh4:D (2.7) BS01 GER ? GO:0001772 ... P52565 11513578
    18365 1hh4:E (2.7) BS01 GER ? GO:0001772 ... P52565 11513578
    18366 1hh5:A (1.9) BS01 HEC ? GO:0009055 ... P00137 11320307
    18367 1hh5:A (1.9) BS02 HEC ? GO:0009055 ... P00137 11320307
    18368 1hh5:A (1.9) BS03 HEC ? GO:0009055 ... P00137 11320307
    18369 1hh6:A (2.6) BS01 peptide ? GO:0005576 ... P01837 10990450
    18370 1hh6:B (2.6) BS01 peptide ? N/A P01864 10990450
    18371 1hh7:A (1.4) BS01 HEC ? GO:0009055 ... P00091 11092951
    18372 1hh9:A (2.7) BS01 peptide ? GO:0005576 ... P01837 10990450
    18373 1hh9:B (2.7) BS01 peptide ? N/A P01864 10990450
    18374 1hhg:A (2.6) BS01 peptide ? N/A P04439 7694806
    18375 1hhg:D (2.6) BS01 peptide ? N/A P04439 7694806
    18376 1hhh:A (3.0) BS01 peptide ? N/A P04439 7694806
    18377 1hhi:A (2.5) BS01 peptide ? N/A P04439 7694806
    18378 1hhi:D (2.5) BS01 peptide ? N/A P04439 7694806
    18379 1hhj:A (2.5) BS01 peptide ? N/A P04439 7694806
    18380 1hhj:D (2.5) BS01 peptide ? N/A P04439 7694806
    18381 1hhk:A (2.5) BS01 peptide ? N/A P04439 7694806
    18382 1hhk:D (2.5) BS01 peptide ? N/A P04439 7694806
    18383 1hho:A (2.1) BS01 HEM ? GO:0004601 ... P69905 6644819
    18384 1hho:A (2.1) BS02 OXY ? GO:0004601 ... P69905 6644819
    18385 1hho:B (2.1) BS01 HEM ? GO:0004601 ... P68871 6644819
    18386 1hho:B (2.1) BS02 OXY ? GO:0004601 ... P68871 6644819
    18387 1hhs:A (2.0) BS01 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    18388 1hhs:B (2.0) BS01 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    18389 1hhs:C (2.0) BS01 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    18390 1hht:P (2.9) BS01 dna 2.7.7.48 GO:0000166 ... P11124 11242087
    18391 1hht:P (2.9) BS02 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    18392 1hht:Q (2.9) BS01 dna 2.7.7.48 GO:0000166 ... P11124 11242087
    18393 1hht:Q (2.9) BS02 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    18394 1hht:R (2.9) BS01 dna 2.7.7.48 GO:0000166 ... P11124 11242087
    18395 1hht:R (2.9) BS02 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    18396 1hi0:P (3.0) BS01 dna 2.7.7.48 GO:0000166 ... P11124 11242087
    18397 1hi0:P (3.0) BS02 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    18398 1hi0:P (3.0) BS03 GTP 2.7.7.48 GO:0000166 ... P11124 11242087
    18399 1hi0:P (3.0) BS04 GTP 2.7.7.48 GO:0000166 ... P11124 11242087
    18400 1hi0:Q (3.0) BS01 dna 2.7.7.48 GO:0000166 ... P11124 11242087
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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