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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    16001 1gth:C (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    16002 1gth:C (2.25) BS08 IUR 1.3.1.2 GO:0000166 ... Q28943 11796730
    16003 1gth:D (2.25) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16004 1gth:D (2.25) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16005 1gth:D (2.25) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16006 1gth:D (2.25) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16007 1gth:D (2.25) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    16008 1gth:D (2.25) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    16009 1gth:D (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    16010 1gth:D (2.25) BS08 URA 1.3.1.2 GO:0000166 ... Q28943 11796730
    16011 1gti:A (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    16012 1gti:B (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    16013 1gti:C (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    16014 1gti:D (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    16015 1gti:E (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    16016 1gti:F (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    16017 1gtj:1 (1.75) BS01 peptide ? GO:0004252 ... Q8RR56 12057200
    16018 1gtj:1 (1.75) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    16019 1gtj:2 (1.75) BS01 peptide ? GO:0004252 ... Q8RR56 12057200
    16020 1gtj:2 (1.75) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    16021 1gtk:A (1.66) BS01 DPM 2.5.1.61 GO:0004418 ... P06983 12555854
    16022 1gtl:1 (2.8) BS01 peptide ? GO:0004252 ... Q8RR56 12057200
    16023 1gtl:1 (2.8) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    16024 1gtl:2 (2.8) BS01 peptide ? GO:0004252 ... Q8RR56 12057200
    16025 1gtl:2 (2.8) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    16026 1gtn:A (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16027 1gtn:A (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16028 1gtn:A (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16029 1gtn:B (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16030 1gtn:B (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16031 1gtn:C (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16032 1gtn:C (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16033 1gtn:D (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16034 1gtn:D (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16035 1gtn:E (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16036 1gtn:E (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16037 1gtn:F (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16038 1gtn:F (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16039 1gtn:G (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16040 1gtn:G (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16041 1gtn:H (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16042 1gtn:H (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16043 1gtn:I (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16044 1gtn:I (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16045 1gtn:J (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16046 1gtn:J (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16047 1gtn:K (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16048 1gtn:K (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16049 1gtn:L (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16050 1gtn:L (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16051 1gtn:L (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16052 1gtn:M (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16053 1gtn:M (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16054 1gtn:M (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16055 1gtn:N (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16056 1gtn:N (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16057 1gtn:N (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16058 1gtn:O (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16059 1gtn:O (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16060 1gtn:O (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16061 1gtn:P (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16062 1gtn:P (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16063 1gtn:P (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16064 1gtn:Q (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16065 1gtn:Q (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16066 1gtn:Q (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16067 1gtn:R (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16068 1gtn:R (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16069 1gtn:R (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16070 1gtn:S (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16071 1gtn:S (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16072 1gtn:S (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16073 1gtn:T (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16074 1gtn:T (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16075 1gtn:T (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16076 1gtn:U (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16077 1gtn:U (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16078 1gtn:U (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16079 1gtn:V (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16080 1gtn:V (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16081 1gtn:V (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16082 1gtq:A (2.3) BS01 ZN 4.2.3.12 GO:0003874 ... P27213 8137809
    16083 1gtq:B (2.3) BS01 ZN 4.2.3.12 GO:0003874 ... P27213 8137809
    16084 1gtr:A (2.5) BS01 rna 6.1.1.18 GO:0000166 ... P00962 1857417
    16085 1gtr:A (2.5) BS02 ATP 6.1.1.18 GO:0000166 ... P00962 1857417
    16086 1gts:A (2.8) BS01 rna 6.1.1.18 GO:0000166 ... P00962 8364025
    16087 1gts:A (2.8) BS02 AMP 6.1.1.18 GO:0000166 ... P00962 8364025
    16088 1gtt:A (1.7) BS01 CA 4.1.1.68
    5.3.3.10
    GO:0003824 ... P37352 11863436
    16089 1gtt:B (1.7) BS01 CA 4.1.1.68
    5.3.3.10
    GO:0003824 ... P37352 11863436
    16090 1gtt:C (1.7) BS01 CA 4.1.1.68
    5.3.3.10
    GO:0003824 ... P37352 11863436
    16091 1gtt:D (1.7) BS01 CA 4.1.1.68
    5.3.3.10
    GO:0003824 ... P37352 11863436
    16092 1gtv:A (1.55) BS01 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    16093 1gtv:A (1.55) BS02 TYD 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    16094 1gtv:A (1.55) BS03 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    16095 1gtv:A (1.55) BS04 TMP 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    16096 1gtv:B (1.55) BS01 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    16097 1gtv:B (1.55) BS02 TYD 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    16098 1gtv:B (1.55) BS03 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    16099 1gtv:B (1.55) BS04 TMP 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    16100 1gtw:A (1.85) BS01 dna ? GO:0003700 ... P17676 N/A
    16101 1gtw:A (1.85) BS02 dna ? GO:0003700 ... P17676 N/A
    16102 1gtw:B (1.85) BS01 dna ? GO:0003700 ... P17676 N/A
    16103 1gtw:B (1.85) BS02 dna ? GO:0003700 ... P17676 N/A
    16104 1gtz:A (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    16105 1gtz:B (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    16106 1gtz:C (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    16107 1gtz:D (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    16108 1gtz:E (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    16109 1gtz:F (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    16110 1gtz:G (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    16111 1gtz:H (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    16112 1gtz:I (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    16113 1gtz:J (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    16114 1gtz:K (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    16115 1gtz:L (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    16116 1gu1:A (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    PDBbind: -logKd/Ki=4.52, Ki=30uM
    BindingDB: Kd=30000nM
    16117 1gu1:A (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    16118 1gu1:B (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    PDBbind: -logKd/Ki=4.52, Ki=30uM
    BindingDB: Kd=30000nM
    16119 1gu1:B (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    16120 1gu1:C (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    16121 1gu1:C (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    16122 1gu1:D (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    16123 1gu1:D (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    16124 1gu1:E (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    16125 1gu1:E (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    16126 1gu1:F (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    16127 1gu1:F (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    16128 1gu1:G (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    16129 1gu1:G (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    16130 1gu1:H (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    16131 1gu1:H (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    16132 1gu1:I (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    16133 1gu1:I (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    16134 1gu1:J (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    16135 1gu1:J (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    16136 1gu1:K (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    16137 1gu1:K (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    16138 1gu1:L (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    16139 1gu1:L (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    16140 1gu2:A (1.19) BS01 HEC ? GO:0003674 ... Q9RQB9 16341897
    16141 1gu2:B (1.19) BS01 HEC ? GO:0003674 ... Q9RQB9 16341897
    16142 1gu3:A (2.3) BS01 BGC 3.2.1.4 GO:0016798 ... P14090 12079353
    16143 1gu3:A (2.3) BS02 BGC 3.2.1.4 GO:0016798 ... P14090 12079353
    16144 1gu3:A (2.3) BS03 BGC 3.2.1.4 GO:0016798 ... P14090 12079353
    16145 1gu4:A (1.8) BS01 dna ? GO:0003700 ... P17676 N/A
    16146 1gu4:A (1.8) BS02 dna ? GO:0003700 ... P17676 N/A
    16147 1gu4:B (1.8) BS01 dna ? GO:0003700 ... P17676 N/A
    16148 1gu4:B (1.8) BS02 dna ? GO:0003700 ... P17676 N/A
    16149 1gu5:A (2.1) BS01 dna ? GO:0003700 ... P17676 N/A
    16150 1gu5:A (2.1) BS02 dna ? GO:0003700 ... P17676 N/A
    16151 1gu5:B (2.1) BS01 dna ? GO:0003700 ... P17676 N/A
    16152 1gu5:B (2.1) BS02 dna ? GO:0003700 ... P17676 N/A
    16153 1gu6:A (2.5) BS01 CA 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16154 1gu6:A (2.5) BS02 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16155 1gu6:A (2.5) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16156 1gu6:A (2.5) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16157 1gu6:A (2.5) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16158 1gu6:A (2.5) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16159 1gu6:C (2.5) BS01 CA 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16160 1gu6:C (2.5) BS02 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16161 1gu6:C (2.5) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16162 1gu6:C (2.5) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16163 1gu6:C (2.5) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16164 1gu6:C (2.5) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16165 1gu6:C (2.5) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16166 1gu6:E (2.5) BS01 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16167 1gu6:E (2.5) BS02 CA 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16168 1gu6:E (2.5) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16169 1gu6:E (2.5) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16170 1gu6:E (2.5) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16171 1gu6:E (2.5) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16172 1gu6:E (2.5) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16173 1gu6:G (2.5) BS01 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16174 1gu6:G (2.5) BS02 CA 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16175 1gu6:G (2.5) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16176 1gu6:G (2.5) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16177 1gu6:G (2.5) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16178 1gu6:G (2.5) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16179 1gu6:G (2.5) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    16180 1gu8:A (2.27) BS01 RET ? GO:0005216 ... P42196 11937052
    16181 1gua:A (2.0) BS01 MG 3.6.5.2 GO:0003924 ... P62834 8756332
    16182 1gua:A (2.0) BS02 GNP 3.6.5.2 GO:0003924 ... P62834 8756332 MOAD: Kd=40nM
    16183 1gua:B (2.0) BS01 CA 2.7.11.1 GO:0007165 ... P04049 8756332
    16184 1gud:A (1.71) BS01 ZN ? GO:0015752 ... P39265 10064713
    16185 1gue:A (2.27) BS01 RET ? GO:0005216 ... P42196 11937052
    16186 1guf:A (2.25) BS01 NDP 1.3.1.104 GO:0005739 ... Q8WZM3 12614607
    16187 1guf:B (2.25) BS01 NDP 1.3.1.104 GO:0005739 ... Q8WZM3 12614607
    16188 1gug:A (1.6) BS01 WO4 ? GO:0015689 ... P08854 11836258
    16189 1gug:A (1.6) BS02 WO4 ? GO:0015689 ... P08854 11836258
    16190 1gug:B (1.6) BS01 WO4 ? GO:0015689 ... P08854 11836258
    16191 1gug:B (1.6) BS02 WO4 ? GO:0015689 ... P08854 11836258
    16192 1gug:C (1.6) BS01 WO4 ? GO:0015689 ... P08854 11836258
    16193 1gug:C (1.6) BS02 WO4 ? GO:0015689 ... P08854 11836258
    16194 1gug:D (1.6) BS01 WO4 ? GO:0015689 ... P08854 11836258
    16195 1gug:D (1.6) BS02 WO4 ? GO:0015689 ... P08854 11836258
    16196 1gug:E (1.6) BS01 WO4 ? GO:0015689 ... P08854 11836258
    16197 1gug:E (1.6) BS02 WO4 ? GO:0015689 ... P08854 11836258
    16198 1gug:F (1.6) BS01 WO4 ? GO:0015689 ... P08854 11836258
    16199 1gug:F (1.6) BS02 WO4 ? GO:0015689 ... P08854 11836258
    16200 1guh:A (2.6) BS01 GSB 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 8331657

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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