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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    12601 1fm6:D (2.1) BS01 peptide ? GO:0003677 ... P37231 10882139
    12602 1fm6:D (2.1) BS02 BRL ? GO:0003677 ... P37231 10882139 BindingDB: EC50=40nM, IC50=1.000000nM, Ki=8nM, Kd=0.145000nM
    12603 1fm6:U (2.1) BS01 peptide ? GO:0003677 ... P19793 10882139
    12604 1fm6:U (2.1) BS02 9CR ? GO:0003677 ... P19793 10882139 BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    12605 1fm6:X (2.1) BS01 peptide ? GO:0003677 ... P37231 10882139
    12606 1fm6:X (2.1) BS02 BRL ? GO:0003677 ... P37231 10882139 BindingDB: EC50=40nM, IC50=1.000000nM, Ki=8nM, Kd=0.145000nM
    12607 1fm7:A (2.3) BS01 DFV 5.5.1.6 GO:0009813 ... P28012 11698411
    12608 1fm7:B (2.3) BS01 DFV 5.5.1.6 GO:0009813 ... P28012 11698411
    12609 1fm8:A (2.3) BS01 DDC 5.5.1.6 GO:0009813 ... P28012 11698411
    12610 1fm9:A (2.1) BS01 peptide ? GO:0003677 ... P19793 10882139
    12611 1fm9:A (2.1) BS02 9CR ? GO:0003677 ... P19793 10882139 BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    12612 1fm9:D (2.1) BS01 peptide ? GO:0003677 ... P37231 10882139
    12613 1fm9:D (2.1) BS02 570 ? GO:0003677 ... P37231 10882139 MOAD: Ki=1nM
    PDBbind: -logKd/Ki=9.00, Ki=1nM
    BindingDB: Ki=1.1nM, EC50=0.338844nM, IC50=25nM
    12614 1fmb:A (1.8) BS01 HYB 2.7.7.-
    2.7.7.49
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.-
    GO:0004190 ... P32542 8844837 MOAD: Ki=0.1nM
    PDBbind: -logKd/Ki=10.00, Ki=0.1nM
    12615 1fmc:A (1.8) BS01 CHO 1.1.1.159 GO:0005829 ... P0AET8 8672472
    12616 1fmc:A (1.8) BS02 NAI 1.1.1.159 GO:0005829 ... P0AET8 8672472
    12617 1fmc:B (1.8) BS01 CHO 1.1.1.159 GO:0005829 ... P0AET8 8672472
    12618 1fmc:B (1.8) BS02 NAI 1.1.1.159 GO:0005829 ... P0AET8 8672472
    12619 1fmg:A (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00761 11679713
    12620 1fmj:A (2.0) BS01 CA ? GO:0005737 ... Q26490 11323722
    12621 1fmj:A (2.0) BS02 A3P ? GO:0005737 ... Q26490 11323722
    12622 1fmj:A (2.0) BS03 RTL ? GO:0005737 ... Q26490 11323722
    12623 1fmj:B (2.0) BS01 CA ? GO:0005737 ... Q26490 11323722
    12624 1fmj:B (2.0) BS02 A3P ? GO:0005737 ... Q26490 11323722
    12625 1fmj:B (2.0) BS03 RTL ? GO:0005737 ... Q26490 11323722
    12626 1fml:A (2.75) BS01 CA ? GO:0005737 ... Q26490 11323722
    12627 1fml:A (2.75) BS02 A3P ? GO:0005737 ... Q26490 11323722
    12628 1fml:A (2.75) BS03 RTL ? GO:0005737 ... Q26490 11323722
    12629 1fml:B (2.75) BS01 CA ? GO:0005737 ... Q26490 11323722
    12630 1fml:B (2.75) BS02 A3P ? GO:0005737 ... Q26490 11323722
    12631 1fml:B (2.75) BS03 RTL ? GO:0005737 ... Q26490 11323722
    12632 1fmo:E (2.2) BS01 peptide 2.7.11.11 GO:0000122 ... P05132 9109651
    12633 1fmo:E (2.2) BS02 ADN 2.7.11.11 GO:0000122 ... P05132 9109651 MOAD: Ki=2.3nM
    12634 1fmu:A (2.7) BS01 MAN 3.4.23.25 GO:0000324 ... P07267 12127998
    12635 1fmw:A (2.15) BS01 MG ? GO:0003774 ... P08799 10954715
    12636 1fmw:A (2.15) BS02 ATP ? GO:0003774 ... P08799 10954715
    12637 1fn3:A (2.48) BS01 HNI ? GO:0004601 ... P69905 N/A
    12638 1fn3:B (2.48) BS01 HNI ? GO:0004601 ... P68871 N/A
    12639 1fn3:C (2.48) BS01 HNI ? GO:0004601 ... P69905 N/A
    12640 1fn3:D (2.48) BS01 HNI ? GO:0004601 ... P68871 N/A
    12641 1fn6:A (1.8) BS01 CA 3.4.21.4 GO:0004252 ... P00761 11679713
    12642 1fn7:A (2.6) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 11456534
    12643 1fn7:A (2.6) BS02 dna 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 11456534
    12644 1fn8:A (0.81) BS01 peptide 3.4.21.4 GO:0004252 ... P35049 11134922
    12645 1fn9:A (1.8) BS01 ZN ? GO:0003723 ... P03527 11230122
    12646 1fn9:B (1.8) BS01 ZN ? GO:0003723 ... P03527 11230122
    12647 1fnb:A (1.7) BS01 FAD 1.18.1.2 GO:0016491 ... P00455 7897656
    12648 1fnc:A (2.0) BS01 FDA 1.18.1.2 GO:0016491 ... P00455 7897656
    12649 1fnc:A (2.0) BS02 A2P 1.18.1.2 GO:0016491 ... P00455 7897656
    12650 1fnd:A (1.7) BS01 FAD 1.18.1.2 GO:0016491 ... P00455 7897656
    12651 1fnd:A (1.7) BS02 A2P 1.18.1.2 GO:0016491 ... P00455 7897656
    12652 1fni:A (1.6) BS01 CA 3.4.21.4 GO:0004252 ... P00761 11679713
    12653 1fnm:A (2.8) BS01 GDP ? GO:0000287 ... P13551 11054294
    12654 1fnn:A (2.0) BS01 ADP ? GO:0005524 ... Q8ZYK1 11030343
    12655 1fnn:B (2.0) BS01 ADP ? GO:0005524 ... Q8ZYK1 11030343
    12656 1fno:A (2.4) BS01 ZN 3.4.11.4 GO:0004177 ... P26311 11856302
    12657 1fno:A (2.4) BS02 ZN 3.4.11.4 GO:0004177 ... P26311 11856302
    12658 1fnp:L (2.6) BS01 BCL ? GO:0009772 ... P0C0Y8 11284681
    12659 1fnp:L (2.6) BS02 BCL ? GO:0009772 ... P0C0Y8 11284681
    12660 1fnp:L (2.6) BS03 BPH ? GO:0009772 ... P0C0Y8 11284681
    12661 1fnp:L (2.6) BS04 U10 ? GO:0009772 ... P0C0Y8 11284681
    12662 1fnp:L (2.6) BS05 FE ? GO:0009772 ... P0C0Y8 11284681
    12663 1fnp:L (2.6) BS06 BCL ? GO:0009772 ... P0C0Y8 11284681
    12664 1fnp:L (2.6) BS07 BPH ? GO:0009772 ... P0C0Y8 11284681
    12665 1fnp:M (2.6) BS01 BCL ? GO:0009772 ... P0C0Y9 11284681
    12666 1fnp:M (2.6) BS02 BPH ? GO:0009772 ... P0C0Y9 11284681
    12667 1fnp:M (2.6) BS03 FE ? GO:0009772 ... P0C0Y9 11284681
    12668 1fnp:M (2.6) BS04 BCL ? GO:0009772 ... P0C0Y9 11284681
    12669 1fnp:M (2.6) BS05 BCL ? GO:0009772 ... P0C0Y9 11284681
    12670 1fnp:M (2.6) BS06 BPH ? GO:0009772 ... P0C0Y9 11284681
    12671 1fnp:M (2.6) BS07 U10 ? GO:0009772 ... P0C0Y9 11284681
    12672 1fnp:M (2.6) BS08 SPO ? GO:0009772 ... P0C0Y9 11284681
    12673 1fnq:L (2.6) BS01 BCL ? GO:0009772 ... P0C0Y8 11284681
    12674 1fnq:L (2.6) BS02 BCL ? GO:0009772 ... P0C0Y8 11284681
    12675 1fnq:L (2.6) BS03 BPH ? GO:0009772 ... P0C0Y8 11284681
    12676 1fnq:L (2.6) BS04 U10 ? GO:0009772 ... P0C0Y8 11284681
    12677 1fnq:L (2.6) BS05 FE ? GO:0009772 ... P0C0Y8 11284681
    12678 1fnq:L (2.6) BS06 BCL ? GO:0009772 ... P0C0Y8 11284681
    12679 1fnq:L (2.6) BS07 BPH ? GO:0009772 ... P0C0Y8 11284681
    12680 1fnq:L (2.6) BS08 U10 ? GO:0009772 ... P0C0Y8 11284681
    12681 1fnq:M (2.6) BS01 BCL ? GO:0009772 ... P0C0Y9 11284681
    12682 1fnq:M (2.6) BS02 BPH ? GO:0009772 ... P0C0Y9 11284681
    12683 1fnq:M (2.6) BS03 FE ? GO:0009772 ... P0C0Y9 11284681
    12684 1fnq:M (2.6) BS04 BCL ? GO:0009772 ... P0C0Y9 11284681
    12685 1fnq:M (2.6) BS05 BCL ? GO:0009772 ... P0C0Y9 11284681
    12686 1fnq:M (2.6) BS06 BPH ? GO:0009772 ... P0C0Y9 11284681
    12687 1fnq:M (2.6) BS07 U10 ? GO:0009772 ... P0C0Y9 11284681
    12688 1fnq:M (2.6) BS08 SPO ? GO:0009772 ... P0C0Y9 11284681
    12689 1fnt:H (3.2) BS01 MG 3.4.25.1 GO:0000502 ... P38624 11081519
    12690 1fnt:I (3.2) BS01 MG 3.4.25.1 GO:0004298 ... P25043 11081519
    12691 1fnt:J (3.2) BS01 MG 3.4.99.46 GO:0000502 ... P25451 11081519
    12692 1fnt:L (3.2) BS01 MG 3.4.25.1 GO:0004298 ... P30656 11081519
    12693 1fnt:V (3.2) BS01 MG 3.4.25.1 GO:0000502 ... P38624 11081519
    12694 1fnt:W (3.2) BS01 MG 3.4.25.1 GO:0004298 ... P25043 11081519
    12695 1fnt:X (3.2) BS01 MG 3.4.99.46 GO:0000502 ... P25451 11081519
    12696 1fnt:Z (3.2) BS01 MG 3.4.25.1 GO:0004298 ... P30656 11081519
    12697 1fnt:a (3.2) BS01 MG 3.4.99.46 GO:0000502 ... P23724 11081519
    12698 1fnx:H (-1.00) BS01 rna ? GO:0003676 ... Q60900 N/A
    12699 1fny:A (1.81) BS01 CA ? GO:0030246 ... Q41159 11484224
    12700 1fnz:A (2.05) BS01 CA ? GO:0030246 ... Q41159 11484224
    12701 1fo0:B (2.5) BS01 peptide ? GO:0002250 ... P04214 11017099
    12702 1fo0:H (2.5) BS01 peptide ? N/A P01901 11017099
    12703 1fo2:A (2.38) BS01 DMJ 3.2.1.113 GO:0004571 ... Q9UKM7 10995765 MOAD: ic50=20uM
    PDBbind: -logKd/Ki=4.70, IC50=20uM
    12704 1fo3:A (1.75) BS01 KIF 3.2.1.113 GO:0004571 ... Q9UKM7 10995765 MOAD: ic50=0.2uM
    PDBbind: -logKd/Ki=6.70, IC50=0.2uM
    12705 1fo4:A (2.1) BS01 CA 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 11005854
    12706 1fo4:A (2.1) BS02 FES 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 11005854
    12707 1fo4:A (2.1) BS03 FES 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 11005854
    12708 1fo4:A (2.1) BS04 FAD 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 11005854
    12709 1fo4:B (2.1) BS01 CA 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 11005854
    12710 1fo4:B (2.1) BS02 FES 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 11005854
    12711 1fo4:B (2.1) BS03 FES 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 11005854
    12712 1fo4:B (2.1) BS04 FAD 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 11005854
    12713 1foa:A (1.8) BS01 UD1 2.4.1.101 GO:0006486 ... P27115 11032794
    12714 1foc:A (3.0) BS01 HEC ? GO:0009055 ... Q5SME3 11069913
    12715 1foc:B (3.0) BS01 HEC ? GO:0009055 ... Q5SME3 11069913
    12716 1fof:A (2.0) BS01 CO 3.5.2.6 GO:0008658 ... P14489 11017203
    12717 1fof:B (2.0) BS01 CO 3.5.2.6 GO:0008658 ... P14489 11017203
    12718 1foh:A (2.4) BS01 FAD 1.14.13.7 GO:0004497 ... P15245 9634698
    12719 1foh:A (2.4) BS02 IPH 1.14.13.7 GO:0004497 ... P15245 9634698
    12720 1foh:B (2.4) BS01 FAD 1.14.13.7 GO:0004497 ... P15245 9634698
    12721 1foh:B (2.4) BS02 IPH 1.14.13.7 GO:0004497 ... P15245 9634698
    12722 1foh:C (2.4) BS01 FAD 1.14.13.7 GO:0004497 ... P15245 9634698
    12723 1foh:C (2.4) BS02 IPH 1.14.13.7 GO:0004497 ... P15245 9634698
    12724 1foh:D (2.4) BS01 FAD 1.14.13.7 GO:0004497 ... P15245 9634698
    12725 1foh:D (2.4) BS02 IPH 1.14.13.7 GO:0004497 ... P15245 9634698
    12726 1foi:A (1.93) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11331003
    12727 1foi:A (1.93) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11331003
    12728 1foi:A (1.93) BS03 14W 1.14.13.39 GO:0004517 ... P29473 11331003
    12729 1foi:B (1.93) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11331003
    12730 1foi:B (1.93) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11331003
    12731 1foi:B (1.93) BS03 14W 1.14.13.39 GO:0004517 ... P29473 11331003
    12732 1foj:A (2.1) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11695891
    12733 1foj:A (2.1) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11695891
    12734 1foj:A (2.1) BS03 7NI 1.14.13.39 GO:0004517 ... P29473 11695891 BindingDB: IC50=35000nM
    12735 1foj:A (2.1) BS04 7I2 1.14.13.39 GO:0004517 ... P29473 11695891
    12736 1foj:A (2.1) BS05 7I2 1.14.13.39 GO:0004517 ... P29473 11695891
    12737 1foj:B (2.1) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11695891
    12738 1foj:B (2.1) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11695891
    12739 1foj:B (2.1) BS03 7NI 1.14.13.39 GO:0004517 ... P29473 11695891 BindingDB: IC50=35000nM
    12740 1foj:B (2.1) BS04 7I2 1.14.13.39 GO:0004517 ... P29473 11695891
    12741 1foj:B (2.1) BS05 7I2 1.14.13.39 GO:0004517 ... P29473 11695891
    12742 1fok:A (2.8) BS01 dna 3.1.21.4 GO:0003677 ... P14870 9214510
    12743 1fok:A (2.8) BS02 dna 3.1.21.4 GO:0003677 ... P14870 9214510
    12744 1fol:A (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 11331003
    12745 1fol:A (2.2) BS02 ARG 1.14.13.39 GO:0004517 ... P29473 11331003
    12746 1fol:B (2.2) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11331003
    12747 1fol:B (2.2) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11331003
    12748 1fol:B (2.2) BS03 ARG 1.14.13.39 GO:0004517 ... P29473 11331003
    12749 1foo:A (2.0) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11331003
    12750 1foo:A (2.0) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11331003
    12751 1foo:A (2.0) BS03 ARG 1.14.13.39 GO:0004517 ... P29473 11331003
    12752 1foo:B (2.0) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11331003
    12753 1foo:B (2.0) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11331003
    12754 1foo:B (2.0) BS03 ARG 1.14.13.39 GO:0004517 ... P29473 11331003
    12755 1fop:A (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 11331003
    12756 1fop:A (2.3) BS02 H4B 1.14.13.39 GO:0004517 ... P29473 11331003
    12757 1fop:A (2.3) BS03 ARG 1.14.13.39 GO:0004517 ... P29473 11331003
    12758 1fop:A (2.3) BS04 ZN 1.14.13.39 GO:0004517 ... P29473 11331003
    12759 1fop:A (2.3) BS05 H4B 1.14.13.39 GO:0004517 ... P29473 11331003
    12760 1fop:B (2.3) BS01 H4B 1.14.13.39 GO:0004517 ... P29473 11331003
    12761 1fop:B (2.3) BS02 ZN 1.14.13.39 GO:0004517 ... P29473 11331003
    12762 1fop:B (2.3) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 11331003
    12763 1fop:B (2.3) BS04 H4B 1.14.13.39 GO:0004517 ... P29473 11331003
    12764 1fop:B (2.3) BS05 ARG 1.14.13.39 GO:0004517 ... P29473 11331003
    12765 1fos:E (3.05) BS01 dna ? GO:0003677 ... P01100 7816143
    12766 1fos:E (3.05) BS02 dna ? GO:0003677 ... P01100 7816143
    12767 1fos:F (3.05) BS01 dna ? GO:0003677 ... P05412 7816143
    12768 1fos:G (3.05) BS01 dna ? GO:0003677 ... P01100 7816143
    12769 1fos:H (3.05) BS01 dna ? GO:0003677 ... P05412 7816143
    12770 1fos:H (3.05) BS02 dna ? GO:0003677 ... P05412 7816143
    12771 1fp0:A (-1.00) BS01 ZN 2.3.2.27 N/A Q13263 11226167
    12772 1fp0:A (-1.00) BS02 ZN 2.3.2.27 N/A Q13263 11226167
    12773 1fp1:D (1.82) BS01 SAH 2.1.1.154
    2.1.1.65
    GO:0008168 ... P93324 11224575
    12774 1fp1:D (1.82) BS02 HCC 2.1.1.154
    2.1.1.65
    GO:0008168 ... P93324 11224575
    12775 1fp2:A (1.4) BS01 SAH 2.1.1.150 GO:0008168 ... O24529 11224575
    12776 1fp2:A (1.4) BS02 HMO 2.1.1.150 GO:0008168 ... O24529 11224575
    12777 1fp4:A (2.5) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 11327812
    12778 1fp4:A (2.5) BS02 CLP 1.18.6.1 GO:0005524 ... P07328 11327812
    12779 1fp4:B (2.5) BS01 CLP 1.18.6.1 GO:0005524 ... P07329 11327812
    12780 1fp4:B (2.5) BS02 CA 1.18.6.1 GO:0005524 ... P07329 11327812
    12781 1fp4:B (2.5) BS03 CA 1.18.6.1 GO:0005524 ... P07329 11327812
    12782 1fp4:C (2.5) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 11327812
    12783 1fp4:C (2.5) BS02 CLP 1.18.6.1 GO:0005524 ... P07328 11327812
    12784 1fp4:D (2.5) BS01 CA 1.18.6.1 GO:0005524 ... P07329 11327812
    12785 1fp4:D (2.5) BS02 CLP 1.18.6.1 GO:0005524 ... P07329 11327812
    12786 1fp4:D (2.5) BS03 CA 1.18.6.1 GO:0005524 ... P07329 11327812
    12787 1fp6:A (2.15) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11101289
    12788 1fp6:A (2.15) BS02 ADP 1.18.6.1 GO:0005524 ... P00459 11101289
    12789 1fp6:B (2.15) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11101289
    12790 1fp6:B (2.15) BS02 ADP 1.18.6.1 GO:0005524 ... P00459 11101289
    12791 1fp6:C (2.15) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11101289
    12792 1fp6:C (2.15) BS02 ADP 1.18.6.1 GO:0005524 ... P00459 11101289
    12793 1fp6:D (2.15) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11101289
    12794 1fp6:D (2.15) BS02 ADP 1.18.6.1 GO:0005524 ... P00459 11101289
    12795 1fp7:A (3.2) BS01 K 6.3.4.3 GO:0004329 ... P21164 11087401
    12796 1fpb:A (2.6) BS01 FDP 3.1.3.11 GO:0005737 ... P00636 1312721
    12797 1fpb:A (2.6) BS02 FDP 3.1.3.11 GO:0005737 ... P00636 1312721
    12798 1fpb:B (2.6) BS01 FDP 3.1.3.11 GO:0005737 ... P00636 1312721
    12799 1fpc:H (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 15299843
    12800 1fpc:H (2.3) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 15299843

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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