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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11401 1f4p:A (1.3) BS01 FMN ? GO:0009055 ... P00323 11264581
    11402 1f4r:A (2.4) BS01 dna 3.2.2.21 GO:0003677 ... P29372 11106395
    11403 1f4r:A (2.4) BS02 dna 3.2.2.21 GO:0003677 ... P29372 11106395
    11404 1f4s:P (-1.00) BS01 dna ? GO:0000981 ... P21228 11566132
    11405 1f4s:P (-1.00) BS02 dna ? GO:0000981 ... P21228 11566132
    11406 1f4s:P (-1.00) BS03 ZN ? GO:0000981 ... P21228 11566132
    11407 1f4s:P (-1.00) BS04 ZN ? GO:0000981 ... P21228 11566132
    11408 1f4t:A (1.93) BS01 ZN 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 10859321
    11409 1f4t:A (1.93) BS02 HEM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 10859321
    11410 1f4t:A (1.93) BS03 PIM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 10859321
    11411 1f4t:B (1.93) BS01 ZN 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 10859321
    11412 1f4t:B (1.93) BS02 HEM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 10859321
    11413 1f4t:B (1.93) BS03 PIM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 10859321
    11414 1f4u:A (2.69) BS01 HEM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 10859321
    11415 1f4u:A (2.69) BS02 IMD 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 10859321
    11416 1f4u:B (2.69) BS01 HEM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 10859321
    11417 1f4u:B (2.69) BS02 IMD 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 10859321
    11418 1f4v:A (2.22) BS01 peptide ? GO:0000156 ... P0AE67 11135671
    11419 1f4v:A (2.22) BS02 BEF ? GO:0000156 ... P0AE67 11135671
    11420 1f4v:A (2.22) BS03 MG ? GO:0000156 ... P0AE67 11135671
    11421 1f4v:B (2.22) BS01 peptide ? GO:0000156 ... P0AE67 11135671
    11422 1f4v:B (2.22) BS02 MG ? GO:0000156 ... P0AE67 11135671
    11423 1f4v:B (2.22) BS03 BEF ? GO:0000156 ... P0AE67 11135671
    11424 1f4v:C (2.22) BS01 peptide ? GO:0000156 ... P0AE67 11135671
    11425 1f4v:C (2.22) BS02 peptide ? GO:0000156 ... P0AE67 11135671
    11426 1f4v:C (2.22) BS03 MG ? GO:0000156 ... P0AE67 11135671
    11427 1f4v:C (2.22) BS04 BEF ? GO:0000156 ... P0AE67 11135671
    11428 1f4z:A (1.8) BS01 RET ? GO:0005216 ... P02945 10903866
    11429 1f50:A (1.7) BS01 RET ? GO:0005216 ... P02945 10903866
    11430 1f51:E (3.0) BS01 MG 2.7.-.- GO:0000160 ... P06628 10997904
    11431 1f52:A (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11432 1f52:A (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11433 1f52:A (2.49) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11434 1f52:B (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11435 1f52:B (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11436 1f52:B (2.49) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11437 1f52:C (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11438 1f52:C (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11439 1f52:C (2.49) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11440 1f52:D (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11441 1f52:D (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11442 1f52:D (2.49) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11443 1f52:E (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11444 1f52:E (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11445 1f52:E (2.49) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11446 1f52:F (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11447 1f52:F (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11448 1f52:F (2.49) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11449 1f52:G (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11450 1f52:G (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11451 1f52:G (2.49) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11452 1f52:H (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11453 1f52:H (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11454 1f52:H (2.49) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11455 1f52:I (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11456 1f52:I (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11457 1f52:I (2.49) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11458 1f52:J (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11459 1f52:J (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11460 1f52:J (2.49) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11461 1f52:K (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11462 1f52:K (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11463 1f52:K (2.49) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11464 1f52:L (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11465 1f52:L (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11466 1f52:L (2.49) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11467 1f55:A (-1.00) BS01 CA ? GO:0005509 ... P06787 11076504
    11468 1f55:A (-1.00) BS02 CA ? GO:0005509 ... P06787 11076504
    11469 1f56:A (2.05) BS01 CU1 ? GO:0005886 ... O82080 11085657
    11470 1f56:B (2.05) BS01 CU1 ? GO:0005886 ... O82080 11085657
    11471 1f56:C (2.05) BS01 CU1 ? GO:0005886 ... O82080 11085657
    11472 1f57:A (1.75) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 10955996
    11473 1f57:A (1.75) BS02 DCY 3.4.17.1 GO:0004181 ... P00730 10955996 MOAD: Ki=2.3uM
    PDBbind: -logKd/Ki=5.64, Ki=2.3uM
    BindingDB: Ki=2300nM
    11474 1f58:H (2.0) BS01 peptide ? N/A Q99LC4 10368281
    11475 1f58:L (2.0) BS01 peptide ? GO:0002250 ... P01666 10368281
    11476 1f59:A (2.8) BS01 peptide ? GO:0006606 ... Q14974 10929717
    11477 1f59:B (2.8) BS01 peptide ? GO:0006606 ... Q14974 10929717
    11478 1f5a:A (2.5) BS01 MN 2.7.7.19 GO:0003723 ... P25500 10944102
    11479 1f5a:A (2.5) BS02 MN 2.7.7.19 GO:0003723 ... P25500 10944102
    11480 1f5a:A (2.5) BS03 3AT 2.7.7.19 GO:0003723 ... P25500 10944102
    11481 1f5a:A (2.5) BS04 3PO 2.7.7.19 GO:0003723 ... P25500 10944102
    11482 1f5b:A (1.62) BS01 F3S ? GO:0003677 ... P00214 11875515
    11483 1f5b:A (1.62) BS02 SF4 ? GO:0003677 ... P00214 11875515
    11484 1f5c:A (1.75) BS01 F3S ? GO:0003677 ... P00214 11875515
    11485 1f5c:A (1.75) BS02 SF4 ? GO:0003677 ... P00214 11875515
    11486 1f5e:P (-1.00) BS01 dna ? GO:0000981 ... P21228 11566132
    11487 1f5e:P (-1.00) BS02 dna ? GO:0000981 ... P21228 11566132
    11488 1f5e:P (-1.00) BS03 ZN ? GO:0000981 ... P21228 11566132
    11489 1f5e:P (-1.00) BS04 ZN ? GO:0000981 ... P21228 11566132
    11490 1f5f:A (1.7) BS01 CA ? N/A P04278 10859323
    11491 1f5f:A (1.7) BS02 ZN ? N/A P04278 10859323
    11492 1f5f:A (1.7) BS03 ZN ? N/A P04278 10859323
    11493 1f5f:A (1.7) BS04 DHT ? N/A P04278 10859323 BindingDB: IC50=3.8nM, Kd=0.182000nM
    11494 1f5j:B (1.8) BS01 SO4 3.2.1.8 GO:0004553 ... P77853 11053833
    11495 1f5k:U (1.8) BS01 BEN 3.4.21.73 GO:0004252 ... P00749 10926521
    11496 1f5l:A (2.1) BS01 AMR 3.4.21.73 GO:0004252 ... P00749 10926521 MOAD: Ki=5.3uM
    PDBbind: -logKd/Ki=5.28, Ki=5.3uM
    BindingDB: IC50=7000nM, Ki=7000nM
    11497 1f5n:A (1.7) BS01 MG 3.6.1.-
    3.6.5.-
    GO:0000139 ... P32455 10970849
    11498 1f5n:A (1.7) BS02 GNP 3.6.1.-
    3.6.5.-
    GO:0000139 ... P32455 10970849
    11499 1f5o:A (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    11500 1f5o:B (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    11501 1f5o:C (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    11502 1f5o:D (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    11503 1f5o:E (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    11504 1f5o:F (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    11505 1f5p:A (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    11506 1f5p:A (2.9) BS02 CMO ? GO:0005344 ... P02208 11340069
    11507 1f5p:B (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    11508 1f5p:B (2.9) BS02 CMO ? GO:0005344 ... P02208 11340069
    11509 1f5p:C (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    11510 1f5p:C (2.9) BS02 CMO ? GO:0005344 ... P02208 11340069
    11511 1f5p:D (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    11512 1f5p:D (2.9) BS02 CMO ? GO:0005344 ... P02208 11340069
    11513 1f5p:E (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    11514 1f5p:E (2.9) BS02 CMO ? GO:0005344 ... P02208 11340069
    11515 1f5p:F (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    11516 1f5r:A (1.65) BS01 CA 3.4.21.4 GO:0004252 ... P00763 11420435
    11517 1f5s:A (1.8) BS01 PO4 3.1.3.3 GO:0000287 ... Q58989 11342136
    11518 1f5s:A (1.8) BS02 MG 3.1.3.3 GO:0000287 ... Q58989 11342136
    11519 1f5s:B (1.8) BS01 PO4 3.1.3.3 GO:0000287 ... Q58989 11342136
    11520 1f5s:B (1.8) BS02 MG 3.1.3.3 GO:0000287 ... Q58989 11342136
    11521 1f5s:B (1.8) BS03 PO4 3.1.3.3 GO:0000287 ... Q58989 11342136
    11522 1f5s:B (1.8) BS04 PO4 3.1.3.3 GO:0000287 ... Q58989 11342136
    11523 1f5t:A (3.0) BS01 dna ? GO:0003677 ... P0DJL7 10956029 PDBbind: Kd=460nM
    11524 1f5t:A (3.0) BS02 dna ? GO:0003677 ... P0DJL7 10956029 PDBbind: Kd=460nM
    11525 1f5t:A (3.0) BS03 NI ? GO:0003677 ... P0DJL7 10956029
    11526 1f5t:A (3.0) BS04 NI ? GO:0003677 ... P0DJL7 10956029
    11527 1f5t:B (3.0) BS01 dna ? GO:0003677 ... P0DJL7 10956029 PDBbind: Kd=460nM
    11528 1f5t:B (3.0) BS02 dna ? GO:0003677 ... P0DJL7 10956029 PDBbind: Kd=460nM
    11529 1f5t:B (3.0) BS03 NI ? GO:0003677 ... P0DJL7 10956029
    11530 1f5t:B (3.0) BS04 NI ? GO:0003677 ... P0DJL7 10956029
    11531 1f5t:C (3.0) BS01 dna ? GO:0003677 ... P0DJL7 10956029 PDBbind: Kd=460nM
    11532 1f5t:C (3.0) BS02 dna ? GO:0003677 ... P0DJL7 10956029 PDBbind: Kd=460nM
    11533 1f5t:C (3.0) BS03 NI ? GO:0003677 ... P0DJL7 10956029
    11534 1f5t:C (3.0) BS04 NI ? GO:0003677 ... P0DJL7 10956029
    11535 1f5t:D (3.0) BS01 dna ? GO:0003677 ... P0DJL7 10956029 PDBbind: Kd=460nM
    11536 1f5t:D (3.0) BS02 dna ? GO:0003677 ... P0DJL7 10956029 PDBbind: Kd=460nM
    11537 1f5t:D (3.0) BS03 NI ? GO:0003677 ... P0DJL7 10956029
    11538 1f5t:D (3.0) BS04 NI ? GO:0003677 ... P0DJL7 10956029
    11539 1f5v:A (1.7) BS01 FMN 1.-.-.- GO:0003955 ... P17117 11034992
    11540 1f5v:A (1.7) BS02 FMN 1.-.-.- GO:0003955 ... P17117 11034992
    11541 1f5v:B (1.7) BS01 FMN 1.-.-.- GO:0003955 ... P17117 11034992
    11542 1f5v:B (1.7) BS02 FMN 1.-.-.- GO:0003955 ... P17117 11034992
    11543 1f5y:A (-1.00) BS01 CA ? N/A P01130 10933493
    11544 1f5y:A (-1.00) BS02 CA ? N/A P01130 10933493
    11545 1f61:A (2.0) BS01 MG 4.1.3.1 GO:0003824 ... P9WKK7 10932251
    11546 1f61:B (2.0) BS01 MG 4.1.3.1 GO:0003824 ... P9WKK7 10932251
    11547 1f62:A (-1.00) BS01 ZN 2.7.10.2 GO:0006338 ... Q9UIG0 11124022
    11548 1f62:A (-1.00) BS02 ZN 2.7.10.2 GO:0006338 ... Q9UIG0 11124022
    11549 1f63:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10049310
    11550 1f65:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10049310
    11551 1f65:A (1.7) BS02 OXY 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10049310
    11552 1f66:A (2.6) BS01 dna ? GO:0000786 ... P84233 11101893
    11553 1f66:A (2.6) BS02 dna ? GO:0000786 ... P84233 11101893
    11554 1f66:B (2.6) BS01 dna ? GO:0000786 ... P62806 11101893
    11555 1f66:B (2.6) BS02 dna ? GO:0000786 ... P62806 11101893
    11556 1f66:C (2.6) BS01 dna ? GO:0000786 ... P0C0S5 11101893
    11557 1f66:C (2.6) BS02 dna ? GO:0000786 ... P0C0S5 11101893
    11558 1f66:C (2.6) BS03 MN ? GO:0000786 ... P0C0S5 11101893
    11559 1f66:D (2.6) BS01 dna ? GO:0000786 ... P02281 11101893
    11560 1f66:D (2.6) BS02 dna ? GO:0000786 ... P02281 11101893
    11561 1f66:E (2.6) BS01 dna ? GO:0000786 ... P84233 11101893
    11562 1f66:E (2.6) BS02 dna ? GO:0000786 ... P84233 11101893
    11563 1f66:F (2.6) BS01 dna ? GO:0000786 ... P62806 11101893
    11564 1f66:F (2.6) BS02 dna ? GO:0000786 ... P62806 11101893
    11565 1f66:G (2.6) BS01 dna ? GO:0000786 ... P0C0S5 11101893
    11566 1f66:G (2.6) BS02 dna ? GO:0000786 ... P0C0S5 11101893
    11567 1f66:G (2.6) BS03 MN ? GO:0000786 ... P0C0S5 11101893
    11568 1f66:H (2.6) BS01 dna ? GO:0000786 ... P02281 11101893
    11569 1f66:H (2.6) BS02 dna ? GO:0000786 ... P02281 11101893
    11570 1f6b:A (1.7) BS01 MG 3.6.5.2 GO:0003400 ... Q9QVY3 11739406
    11571 1f6b:A (1.7) BS02 GDP 3.6.5.2 GO:0003400 ... Q9QVY3 11739406
    11572 1f6b:B (1.7) BS01 GDP 3.6.5.2 GO:0003400 ... Q9QVY3 11739406
    11573 1f6d:A (2.5) BS01 UDP 5.1.3.14 GO:0003824 ... P27828 11106477
    11574 1f6d:B (2.5) BS01 UDP 5.1.3.14 GO:0003824 ... P27828 11106477
    11575 1f6d:C (2.5) BS01 UDP 5.1.3.14 GO:0003824 ... P27828 11106477
    11576 1f6d:D (2.5) BS01 UDP 5.1.3.14 GO:0003824 ... P27828 11106477
    11577 1f6h:A (3.31) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    11578 1f6m:A (2.95) BS01 FAD 1.8.1.9 GO:0004791 ... P0A9P4 10947986
    11579 1f6m:A (2.95) BS02 3AA 1.8.1.9 GO:0004791 ... P0A9P4 10947986
    11580 1f6m:B (2.95) BS01 FAD 1.8.1.9 GO:0004791 ... P0A9P4 10947986
    11581 1f6m:B (2.95) BS02 3AA 1.8.1.9 GO:0004791 ... P0A9P4 10947986
    11582 1f6m:E (2.95) BS01 FAD 1.8.1.9 GO:0004791 ... P0A9P4 10947986
    11583 1f6m:E (2.95) BS02 3AA 1.8.1.9 GO:0004791 ... P0A9P4 10947986
    11584 1f6m:F (2.95) BS01 FAD 1.8.1.9 GO:0004791 ... P0A9P4 10947986
    11585 1f6m:F (2.95) BS02 3AA 1.8.1.9 GO:0004791 ... P0A9P4 10947986
    11586 1f6n:L (2.8) BS01 BCL ? GO:0009772 ... P0C0Y8 11284681
    11587 1f6n:L (2.8) BS02 BCL ? GO:0009772 ... P0C0Y8 11284681
    11588 1f6n:L (2.8) BS03 BCL ? GO:0009772 ... P0C0Y8 11284681
    11589 1f6n:L (2.8) BS04 BPH ? GO:0009772 ... P0C0Y8 11284681
    11590 1f6n:L (2.8) BS05 U10 ? GO:0009772 ... P0C0Y8 11284681
    11591 1f6n:L (2.8) BS06 FE ? GO:0009772 ... P0C0Y8 11284681
    11592 1f6n:L (2.8) BS07 BPH ? GO:0009772 ... P0C0Y8 11284681
    11593 1f6n:L (2.8) BS08 U10 ? GO:0009772 ... P0C0Y8 11284681
    11594 1f6n:M (2.8) BS01 BCL ? GO:0009772 ... P0C0Y9 11284681
    11595 1f6n:M (2.8) BS02 BCL ? GO:0009772 ... P0C0Y9 11284681
    11596 1f6n:M (2.8) BS03 BPH ? GO:0009772 ... P0C0Y9 11284681
    11597 1f6n:M (2.8) BS04 FE ? GO:0009772 ... P0C0Y9 11284681
    11598 1f6n:M (2.8) BS05 BCL ? GO:0009772 ... P0C0Y9 11284681
    11599 1f6n:M (2.8) BS06 BPH ? GO:0009772 ... P0C0Y9 11284681
    11600 1f6n:M (2.8) BS07 U10 ? GO:0009772 ... P0C0Y9 11284681

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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