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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    831001 8ylb:I (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    831002 8ylb:I (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    831003 8ylb:J (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    831004 8ylb:J (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    831005 8ylb:K (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    831006 8ylb:K (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    831007 8ylb:L (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    831008 8ylb:L (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    831009 8ylb:M (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    831010 8ylb:M (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    831011 8ylb:N (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    831012 8ylb:N (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    831013 8ylc:A (2.30004) BS01 ZN 3.1.4.53 N/A Q08499 N/A
    831014 8ylc:A (2.30004) BS02 A1D6Q 3.1.4.53 N/A Q08499 N/A
    831015 8ylc:B (2.30004) BS01 ZN 3.1.4.53 N/A Q08499 N/A
    831016 8ylc:B (2.30004) BS02 A1D6Q 3.1.4.53 N/A Q08499 N/A
    831017 8yle:A (1.86) BS01 ACP 3.1.-.-
    5.6.2.4    		 GO:0003676 ... Q14191 N/A
    831018 8yle:A (1.86) BS02 ZN 3.1.-.-
    5.6.2.4    		 GO:0003676 ... Q14191 N/A
    831019 8yle:A (1.86) BS03 ZN 3.1.-.-
    5.6.2.4    		 GO:0003676 ... Q14191 N/A
    831020 8ym2:A (2.0) BS01 peptide ? N/A Q8BIZ1 38759928
    831021 8ym7:A (2.83) BS01 FAD 1.14.99.66 N/A O60341 N/A
    831022 8ym7:A (2.83) BS02 A1LZJ 1.14.99.66 N/A O60341 N/A
    831023 8you:A (1.8) BS01 SEK ? GO:0046872 ... A0A5C7ETD9 N/A
    831024 8you:A (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831025 8you:A (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831026 8you:A (1.8) BS04 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831027 8you:A (1.8) BS05 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831028 8you:B (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831029 8you:B (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831030 8you:B (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831031 8you:B (1.8) BS04 SE ? GO:0046872 ... A0A5C7ETD9 N/A
    831032 8yr2:A (2.89) BS01 41U ? GO:0003779 ... P23975 38750358
    831033 8yr2:A (2.89) BS02 PIO ? GO:0003779 ... P23975 38750358
    831034 8yr2:A (2.89) BS03 CLR ? GO:0003779 ... P23975 38750358
    831035 8yr2:A (2.89) BS04 CLR ? GO:0003779 ... P23975 38750358
    831036 8yr2:A (2.89) BS05 CLR ? GO:0003779 ... P23975 38750358
    831037 8yr2:A (2.89) BS06 CLR ? GO:0003779 ... P23975 38750358
    831038 8yr2:A (2.89) BS07 A1LX7 ? GO:0003779 ... P23975 38750358
    831039 8yr2:A (2.89) BS08 A1LX7 ? GO:0003779 ... P23975 38750358
    831040 8yr2:A (2.89) BS09 CLR ? GO:0003779 ... P23975 38750358
    831041 8yr2:A (2.89) BS10 CLR ? GO:0003779 ... P23975 38750358
    831042 8yr2:A (2.89) BS11 CLR ? GO:0003779 ... P23975 38750358
    831043 8yr2:A (2.89) BS12 CLR ? GO:0003779 ... P23975 38750358
    831044 8yr2:B (2.89) BS01 41U ? GO:0003779 ... P23975 38750358
    831045 8yr2:B (2.89) BS02 PIO ? GO:0003779 ... P23975 38750358
    831046 8yr2:B (2.89) BS03 CLR ? GO:0003779 ... P23975 38750358
    831047 8yr2:B (2.89) BS04 CLR ? GO:0003779 ... P23975 38750358
    831048 8yr2:B (2.89) BS05 CLR ? GO:0003779 ... P23975 38750358
    831049 8yr2:B (2.89) BS06 CLR ? GO:0003779 ... P23975 38750358
    831050 8yr2:B (2.89) BS07 A1LX7 ? GO:0003779 ... P23975 38750358
    831051 8yr2:B (2.89) BS08 A1LX7 ? GO:0003779 ... P23975 38750358
    831052 8yr2:B (2.89) BS09 CLR ? GO:0003779 ... P23975 38750358
    831053 8yr2:B (2.89) BS10 CLR ? GO:0003779 ... P23975 38750358
    831054 8yr2:B (2.89) BS11 CLR ? GO:0003779 ... P23975 38750358
    831055 8yr2:B (2.89) BS12 CLR ? GO:0003779 ... P23975 38750358
    831056 8yrc:A (1.7) BS01 CL ? GO:0005829 ... A0A0H3JTJ5 38581951
    831057 8yrg:R (3.14) BS01 A1LZU ? GO:0004930 ... P0ABE7
    Q96LA9    		 38718132
    831058 8yrt:A (2.0) BS01 PLP ? GO:0003824 ... F4KWH0 N/A
    831059 8yru:A (2.0) BS01 ZXN ? GO:0003824 ... F4KWH0 N/A
    831060 8yrv:A (1.7) BS01 OCF ? GO:0003824 ... F4KWH0 N/A
    831061 8ysa:A (1.5) BS01 peptide 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0008233 ... P0DTD1 N/A
    831062 8yt5:A (1.6) BS01 ADP 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    831063 8yt5:A (1.6) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    831064 8yt5:A (1.6) BS03 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    831065 8yti:A (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    831066 8yti:A (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    831067 8yti:B (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    831068 8yti:B (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    831069 8yti:C (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    831070 8yti:C (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    831071 8yti:D (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    831072 8yti:D (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    831073 8yti:E (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    831074 8yti:E (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    831075 8yti:F (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    831076 8yti:F (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    831077 8yti:G (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    831078 8yti:G (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    831079 8yti:G (2.7) BS03 CA ? GO:0000786 ... P04908 N/A
    831080 8yti:H (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    831081 8yti:H (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    831082 8yti:K (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    831083 8yti:K (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    831084 8yti:L (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    831085 8yti:L (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    831086 8yti:M (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    831087 8yti:M (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    831088 8yti:N (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    831089 8yti:N (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    831090 8yti:O (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    831091 8yti:O (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    831092 8yti:P (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    831093 8yti:P (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    831094 8yti:Q (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    831095 8yti:Q (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    831096 8yti:Q (2.7) BS03 CA ? GO:0000786 ... P04908 N/A
    831097 8yti:R (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    831098 8yti:R (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    831099 8yti:U (2.7) BS01 dna ? GO:0000786 ... Q92522 N/A
    831100 8ytq:A (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    831101 8ytq:C (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    831102 8ytq:D (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    831103 8ytr:A (1.8) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    831104 8ytr:B (1.8) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    831105 8yts:A (1.15) BS01 HEC ? GO:0009055 ... W0DLP1 N/A
    831106 8yts:B (1.15) BS01 HEC ? GO:0009055 ... W0DLP1 N/A
    831107 8ytx:A (2.53) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    831108 8ytx:A (2.53) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    831109 8ytx:A (2.53) BS03 A1D68 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    831110 8ytx:B (2.53) BS01 GDP 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    831111 8ytx:B (2.53) BS02 A1D68 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    831112 8ytx:C (2.53) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    831113 8ytx:C (2.53) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    831114 8ytx:D (2.53) BS01 GDP 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    831115 8ytx:D (2.53) BS02 A1D68 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    831116 8ytx:F (2.53) BS01 ACP 6.3.2.25 GO:0046872 ... A0A8V0Z8P0 N/A
    831117 8yu5:A (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831118 8yu5:A (1.45) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831119 8yu5:A (1.45) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831120 8yu5:B (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831121 8yu5:B (1.45) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831122 8yu6:A (1.55) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831123 8yu6:A (1.55) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831124 8yu6:A (1.55) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831125 8yu6:A (1.55) BS04 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831126 8yu6:B (1.55) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831127 8yu6:B (1.55) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831128 8yu6:B (1.55) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831129 8yu9:A (3.25) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    831130 8yu9:A (3.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    831131 8yu9:B (3.25) BS01 A1D7A ? GO:0005525 ... A0A8D0VN39 N/A
    831132 8yu9:B (3.25) BS02 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    831133 8yu9:B (3.25) BS03 MG ? GO:0005525 ... A0A8D0VN39 N/A
    831134 8yu9:C (3.25) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    831135 8yu9:C (3.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    831136 8yu9:C (3.25) BS03 A1D7A 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    831137 8yu9:D (3.25) BS01 A1D7A ? GO:0005525 ... A0A8D0VN39 N/A
    831138 8yu9:D (3.25) BS02 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    831139 8yu9:F (3.25) BS01 ACP 6.3.2.25 GO:0046872 ... A0A8V0Z8P0 N/A
    831140 8yua:A (2.37) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    831141 8yua:A (2.37) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    831142 8yua:A (2.37) BS03 MG 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    831143 8yua:B (2.37) BS01 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    831144 8yua:B (2.37) BS02 A1D69 ? GO:0005525 ... A0A8D0VN39 N/A
    831145 8yua:C (2.37) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    831146 8yua:C (2.37) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    831147 8yua:D (2.37) BS01 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    831148 8yua:D (2.37) BS02 A1D69 ? GO:0005525 ... A0A8D0VN39 N/A
    831149 8yua:F (2.37) BS01 ACP 6.3.2.25 GO:0046872 ... A0A8V0Z8P0 N/A
    831150 8yud:A (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    831151 8yud:A (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    831152 8yud:B (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    831153 8yud:B (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    831154 8yud:C (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    831155 8yud:C (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    831156 8yud:D (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    831157 8yud:D (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    831158 8yud:E (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    831159 8yud:E (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    831160 8yud:F (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    831161 8yud:F (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    831162 8yut:R (2.7) BS01 A1D67 ? GO:0004930 ... P25021 38647423
    831163 8yut:R (2.7) BS02 CLR ? GO:0004930 ... P25021 38647423
    831164 8yuu:R (2.7) BS01 HSM ? GO:0004930 ... Q9Y5N1 38647423
    831165 8yuu:R (2.7) BS02 CLR ? GO:0004930 ... Q9Y5N1 38647423
    831166 8yuv:R (3.0) BS01 A1LY4 ? GO:0004930 ... Q9Y5N1 38647423
    831167 8yuv:R (3.0) BS02 CLR ? GO:0004930 ... Q9Y5N1 38647423
    831168 8ywo:A (1.58) BS01 02A 3.8.1.2 GO:0009636 ... B2Z3V8 N/A
    831169 8yxm:A (2.93) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    831170 8yxm:A (2.93) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    831171 8yxp:A (3.01) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    831172 8yxp:A (3.01) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    831173 8yyn:A (1.9) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    831174 8yyn:B (1.9) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    831175 8yyo:A (1.7) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    831176 8yyo:B (1.7) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    831177 8yyq:A (1.95) BS01 A1L0G ? GO:0000166 ... A0A0F7R6G7 38805007
    831178 8yyr:A (1.8) BS01 A1L0H ? GO:0000166 ... A0A0F7R6G7 38805007
    831179 8z10:A (2.35) BS01 PRO ? N/A P35222 N/A
    831180 8z4b:B (2.5) BS01 peptide ? N/A P01308 N/A
    831181 8z4b:D (2.5) BS01 peptide ? N/A P01308 N/A
    831182 8z5l:A (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    831183 8z5l:A (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    831184 8z5l:A (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    831185 8z5l:B (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    831186 8z5l:B (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    831187 8z5l:B (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    831188 8z5l:B (2.65) BS04 A1LXO 3.5.2.6 GO:0008270 ... P52699 38690676
    831189 8z5l:C (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    831190 8z5l:C (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    831191 8z5l:C (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    831192 8z5l:C (2.65) BS04 A1LXO 3.5.2.6 GO:0008270 ... P52699 38690676
    831193 8z5l:D (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    831194 8z5l:D (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    831195 8z5l:D (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    831196 8z75:A (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831197 8z75:B (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831198 8z75:C (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831199 8z76:A (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831200 8z76:A (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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