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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    830201 8xop:D (2.8) BS01 peptide 3.4.21.92 GO:0004176 ... A0A5B9BGY8 38501868
    830202 8xop:D (2.8) BS02 peptide 3.4.21.92 GO:0004176 ... A0A5B9BGY8 38501868
    830203 8xop:E (2.8) BS01 peptide 3.4.21.92 GO:0004176 ... A0A5B9BGY8 38501868
    830204 8xop:E (2.8) BS02 peptide 3.4.21.92 GO:0004176 ... A0A5B9BGY8 38501868
    830205 8xop:F (2.8) BS01 peptide 3.4.21.92 GO:0004176 ... A0A5B9BGY8 38501868
    830206 8xop:F (2.8) BS02 peptide 3.4.21.92 GO:0004176 ... A0A5B9BGY8 38501868
    830207 8xop:G (2.8) BS01 peptide 3.4.21.92 GO:0004176 ... A0A5B9BGY8 38501868
    830208 8xop:G (2.8) BS02 peptide 3.4.21.92 GO:0004176 ... A0A5B9BGY8 38501868
    830209 8xop:H (2.8) BS01 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    830210 8xop:H (2.8) BS02 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    830211 8xop:I (2.8) BS01 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    830212 8xop:I (2.8) BS02 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    830213 8xop:J (2.8) BS01 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    830214 8xop:J (2.8) BS02 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    830215 8xop:K (2.8) BS01 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    830216 8xop:K (2.8) BS02 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    830217 8xop:L (2.8) BS01 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    830218 8xop:L (2.8) BS02 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    830219 8xop:M (2.8) BS01 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    830220 8xop:M (2.8) BS02 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    830221 8xop:N (2.8) BS01 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    830222 8xop:N (2.8) BS02 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    830223 8xov:A (2.55) BS01 ANP 2.7.11.1 GO:0004672 ... Q15418 N/A
    830224 8xox:A (1.9) BS01 YAM 2.7.10.2 GO:0004672 ... Q14289 N/A
    830225 8xp5:A (2.55) BS01 ZN ? GO:0000976 ... P04637
    Q07817
    N/A
    830226 8xp5:B (2.55) BS01 ZN ? GO:0000976 ... P04637
    Q07817
    N/A
    830227 8xpn:A (2.1) BS01 ZN 3.4.19.12 GO:0004843 ... P40818 N/A
    830228 8xpn:B (2.1) BS01 ZN 3.4.19.12 GO:0004843 ... P40818 N/A
    830229 8xpn:C (2.1) BS01 ZN 3.4.19.12 GO:0004843 ... P40818 N/A
    830230 8xpt:A (3.35) BS01 SAH 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    830231 8xpt:A (3.35) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    830232 8xpt:A (3.35) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    830233 8xpt:A (3.35) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    830234 8xpt:A (3.35) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    830235 8xpt:B (3.35) BS01 SAH 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    830236 8xpt:B (3.35) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    830237 8xpt:B (3.35) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    830238 8xpt:B (3.35) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    830239 8xpt:B (3.35) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    830240 8xpt:C (3.35) BS01 SAH 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    830241 8xpt:C (3.35) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    830242 8xpt:C (3.35) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    830243 8xpt:C (3.35) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    830244 8xpt:C (3.35) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    830245 8xpt:D (3.35) BS01 SAH 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    830246 8xpt:D (3.35) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    830247 8xpt:D (3.35) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    830248 8xpt:D (3.35) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    830249 8xpt:D (3.35) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    830250 8xpv:A (1.55) BS01 4Z5 2.7.10.1 GO:0004672 ... P29317 N/A
    830251 8xr4:A (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    830252 8xr4:B (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    830253 8xr4:C (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    830254 8xr4:D (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    830255 8xr4:E (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    830256 8xr4:F (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    830257 8xr4:G (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    830258 8xr4:H (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    830259 8xud:C (3.49) BS01 peptide 3.4.21.102 N/A P23865 N/A
    830260 8xud:D (3.49) BS01 peptide 3.4.21.102 N/A P23865 N/A
    830261 8xuo:A (2.84) BS01 ADP ? N/A A0A3Q7IF17 38866053
    830262 8xuo:A (2.84) BS02 IHP ? N/A A0A3Q7IF17 38866053
    830263 8xuo:G (2.84) BS01 ADP ? N/A A0A3Q7IF17 38866053
    830264 8xuo:G (2.84) BS02 IHP ? N/A A0A3Q7IF17 38866053
    830265 8xuq:A (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    830266 8xuq:A (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    830267 8xuq:E (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    830268 8xuq:E (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    830269 8xuq:F (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    830270 8xuq:F (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    830271 8xuq:G (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    830272 8xuq:G (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    830273 8xuv:A (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    830274 8xuv:A (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    830275 8xuv:B (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    830276 8xuv:B (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    830277 8xuv:C (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    830278 8xuv:C (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    830279 8xuv:D (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    830280 8xuv:D (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    830281 8xuv:E (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    830282 8xuv:E (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    830283 8xuv:F (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    830284 8xuv:F (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    830285 8xuv:G (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    830286 8xuv:G (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    830287 8xuv:H (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    830288 8xuv:H (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    830289 8xuv:I (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    830290 8xuv:I (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    830291 8xuv:J (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    830292 8xuv:J (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    830293 8xuv:K (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    830294 8xuv:K (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    830295 8xuv:L (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    830296 8xuv:L (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    830297 8xv2:A (3.7) BS01 VIB ? GO:0005506 ... P0ABE7
    Q9BZV2
    38503960
    830298 8xv5:A (3.7) BS01 PXM ? GO:0005506 ... P0ABE7
    Q9BZV2
    38503960
    830299 8xv9:A (3.8) BS01 2TA ? GO:0005506 ... P0ABE7
    Q9BZV2
    38503960
    830300 8xvf:A (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    830301 8xvf:B (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    830302 8xvf:C (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    830303 8xvf:D (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    830304 8xvf:E (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    830305 8xvf:F (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    830306 8xvf:G (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    830307 8xvf:H (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    830308 8xw0:A (3.11) BS01 P5S ? GO:0000325 ... Q9C8G5 38570680
    830309 8xw0:A (3.11) BS02 P5S ? GO:0000325 ... Q9C8G5 38570680
    830310 8xw0:B (3.11) BS01 P5S ? GO:0000325 ... Q9C8G5 38570680
    830311 8xw0:B (3.11) BS02 P5S ? GO:0000325 ... Q9C8G5 38570680
    830312 8xx9:A (1.55) BS01 MN 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    830313 8xx9:A (1.55) BS02 CA 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    830314 8xxa:A (1.55) BS01 BGC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    830315 8xxa:A (1.55) BS02 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    830316 8xxa:A (1.55) BS03 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    830317 8xxa:A (1.55) BS04 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    830318 8xxa:A (1.55) BS05 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    830319 8xxa:A (1.55) BS06 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    830320 8xxa:A (1.55) BS07 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    830321 8xxa:A (1.55) BS08 MN 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    830322 8xxa:A (1.55) BS09 CA 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    830323 8xxl:CD (2.9) BS01 rna ? GO:0003723 ... Q53EL6 38641729
    830324 8xxl:SA (2.9) BS01 rna ? GO:0000028 ... P08865 38641729
    830325 8xxl:SB (2.9) BS01 rna ? GO:0002181 ... P61247 38641729
    830326 8xxl:SC (2.9) BS01 rna ? GO:0002181 ... P15880 38641729
    830327 8xxl:SD (2.9) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38641729
    830328 8xxl:SE (2.9) BS01 rna ? GO:0002181 ... P62701 38641729
    830329 8xxl:SF (2.9) BS01 rna ? GO:0000028 ... P46782 38641729
    830330 8xxl:SG (2.9) BS01 rna ? GO:0000082 ... P62753 38641729
    830331 8xxl:SH (2.9) BS01 rna ? GO:0001843 ... P62081 38641729
    830332 8xxl:SI (2.9) BS01 rna ? GO:0000462 ... P62241 38641729
    830333 8xxl:SJ (2.9) BS01 rna ? GO:0002181 ... P46781 38641729
    830334 8xxl:SK (2.9) BS01 rna ? GO:0002181 ... P46783 38641729
    830335 8xxl:SL (2.9) BS01 rna ? GO:0002181 ... P62280 38641729
    830336 8xxl:SM (2.9) BS01 rna ? GO:0002181 ... P25398 38641729
    830337 8xxl:SN (2.9) BS01 rna ? GO:0002181 ... P62277 38641729
    830338 8xxl:SO (2.9) BS01 rna ? GO:0000028 ... P62263 38641729
    830339 8xxl:SP (2.9) BS01 rna ? GO:0000028 ... P62841 38641729
    830340 8xxl:SQ (2.9) BS01 rna ? GO:0000462 ... P62249 38641729
    830341 8xxl:SR (2.9) BS01 rna ? GO:0002181 ... P08708 38641729
    830342 8xxl:SS (2.9) BS01 rna ? GO:0002181 ... P62269 38641729
    830343 8xxl:ST (2.9) BS01 rna ? GO:0000028 ... P39019 38641729
    830344 8xxl:SU (2.9) BS01 rna ? GO:0002181 ... P60866 38641729
    830345 8xxl:SW (2.9) BS01 rna ? GO:0002181 ... P62244 38641729
    830346 8xxl:SX (2.9) BS01 rna ? GO:0002181 ... P62266 38641729
    830347 8xxl:SY (2.9) BS01 rna ? GO:0002181 ... P62847 38641729
    830348 8xxl:SZ (2.9) BS01 rna ? GO:0002181 ... P62851 38641729
    830349 8xxl:Sa (2.9) BS01 rna ? GO:0002181 ... P62854 38641729
    830350 8xxl:Sa (2.9) BS02 ZN ? GO:0002181 ... P62854 38641729
    830351 8xxl:Sb (2.9) BS01 rna ? GO:0000028 ... P42677 38641729
    830352 8xxl:Sc (2.9) BS01 rna ? GO:0000028 ... P62857 38641729
    830353 8xxl:Sd (2.9) BS01 rna ? GO:0002181 ... P62273 38641729
    830354 8xxl:Sd (2.9) BS02 ZN ? GO:0002181 ... P62273 38641729
    830355 8xxl:Se (2.9) BS01 rna ? GO:0003735 ... P62861 38641729
    830356 8xxl:Sf (2.9) BS01 rna ? GO:0002181 ... P62979 38641729
    830357 8xxl:Sg (2.9) BS01 rna ? GO:0001891 ... P63244 38641729
    830358 8xxm:3G (3.2) BS01 rna ? GO:0001732 ... O75821 38641729
    830359 8xxm:CD (3.2) BS01 rna ? GO:0003723 ... Q53EL6 38641729
    830360 8xxm:SA (3.2) BS01 rna ? GO:0000028 ... P08865 38641729
    830361 8xxm:SB (3.2) BS01 rna ? GO:0002181 ... P61247 38641729
    830362 8xxm:SC (3.2) BS01 rna ? GO:0002181 ... P15880 38641729
    830363 8xxm:SD (3.2) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38641729
    830364 8xxm:SE (3.2) BS01 rna ? GO:0002181 ... P62701 38641729
    830365 8xxm:SF (3.2) BS01 rna ? GO:0000028 ... P46782 38641729
    830366 8xxm:SG (3.2) BS01 rna ? GO:0000082 ... P62753 38641729
    830367 8xxm:SH (3.2) BS01 rna ? GO:0001843 ... P62081 38641729
    830368 8xxm:SI (3.2) BS01 rna ? GO:0000462 ... P62241 38641729
    830369 8xxm:SJ (3.2) BS01 rna ? GO:0002181 ... P46781 38641729
    830370 8xxm:SK (3.2) BS01 rna ? GO:0002181 ... P46783 38641729
    830371 8xxm:SL (3.2) BS01 rna ? GO:0002181 ... P62280 38641729
    830372 8xxm:SM (3.2) BS01 rna ? GO:0002181 ... P25398 38641729
    830373 8xxm:SN (3.2) BS01 rna ? GO:0002181 ... P62277 38641729
    830374 8xxm:SO (3.2) BS01 rna ? GO:0000028 ... P62263 38641729
    830375 8xxm:SP (3.2) BS01 rna ? GO:0000028 ... P62841 38641729
    830376 8xxm:SQ (3.2) BS01 rna ? GO:0000462 ... P62249 38641729
    830377 8xxm:SR (3.2) BS01 rna ? GO:0002181 ... P08708 38641729
    830378 8xxm:SS (3.2) BS01 rna ? GO:0002181 ... P62269 38641729
    830379 8xxm:ST (3.2) BS01 rna ? GO:0000028 ... P39019 38641729
    830380 8xxm:SU (3.2) BS01 rna ? GO:0002181 ... P60866 38641729
    830381 8xxm:SW (3.2) BS01 rna ? GO:0002181 ... P62244 38641729
    830382 8xxm:SX (3.2) BS01 rna ? GO:0002181 ... P62266 38641729
    830383 8xxm:SY (3.2) BS01 rna ? GO:0002181 ... P62847 38641729
    830384 8xxm:SZ (3.2) BS01 rna ? GO:0002181 ... P62851 38641729
    830385 8xxm:Sa (3.2) BS01 rna ? GO:0002181 ... P62854 38641729
    830386 8xxm:Sa (3.2) BS02 ZN ? GO:0002181 ... P62854 38641729
    830387 8xxm:Sb (3.2) BS01 rna ? GO:0000028 ... P42677 38641729
    830388 8xxm:Sc (3.2) BS01 rna ? GO:0000028 ... P62857 38641729
    830389 8xxm:Sd (3.2) BS01 rna ? GO:0002181 ... P62273 38641729
    830390 8xxm:Sd (3.2) BS02 ZN ? GO:0002181 ... P62273 38641729
    830391 8xxm:Se (3.2) BS01 rna ? GO:0003735 ... P62861 38641729
    830392 8xxm:Sf (3.2) BS01 rna ? GO:0002181 ... P62979 38641729
    830393 8xxm:Sg (3.2) BS01 rna ? GO:0001891 ... P63244 38641729
    830394 8xxn:3B (3.6) BS01 rna ? GO:0001732 ... P55884 38641729
    830395 8xxn:3C (3.6) BS01 rna ? GO:0001732 ... Q99613 38641729
    830396 8xxn:3N (3.6) BS01 rna ? GO:0001732 ... O15371 38641729
    830397 8xxn:C1 (3.6) BS01 rna ? GO:0003723 ... P41567 38641729
    830398 8xxn:CD (3.6) BS01 rna ? GO:0003723 ... Q53EL6 38641729
    830399 8xxn:SA (3.6) BS01 rna ? GO:0000028 ... P08865 38641729
    830400 8xxn:SB (3.6) BS01 rna ? GO:0002181 ... P61247 38641729

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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